Download PAG 2012 - Illumina

PAG 2012
www.illumina.com/agriculture
Illumina Technology Workshop
Discover. Develop. Deploy. In Any Species. On Any Scale.
Tuesday, January 17
3:50 p.m. – 6:00 p.m.
Golden West Ballroom
Refreshments will be provided.
Unraveling Green Genomes
Todd Michael, Ph.D.
Head, The Genome Analysis Center
Monsanto
Applications of Next-Generation Sequencing: From Genes to Genomes
Gary Schroth, Ph.D.
Distinguished Scientist
Illumina, Inc.
Characterization of Transgene Insertion Sites via Amplicon Sequencing
Mary Beatty
Research Scientist
Pioneer Hi-Bred
Applied Genomics for Genetic Improvement: Paving the Way for Biological Discovery
Tad S. Sonstegard, Ph.D.
Research Geneticist
USDA, ARS Beltsville
Visit Illumina at Booth #211
to see a live demo of the
MiSeq® personal sequencer.
Learn more at www.illumina.com/MiSeq
Illumina Customer Presentations
Scientists worldwide are discovering that Illumina provides the industry’s best solutions for cutting-edge
genetics research. Below is a list of workshops and posters at the Plant & Animal Genomes XX Conference
that present results from studies using Illumina products.
Visit these presentations and ask the presenters about their experience using Illumina.
Computer Demos
Program No.
Title
Primary Organization
C13
The rice annotation project database: Update for a new genome assembly
(Os-Nipponbare-Reference-IRGSP-1.0)
National Institute of Agrobiological
Sciences
C28
MAPHiTS: an efficient workflow for SNP detection
URGI–INRA de Versailles
WorKshops
Program No.
Title
Primary Organization
W008
Improving the maize genome via GBS (genotyping by sequencing)
Cornell University
W014
Extent and characterization of the Arabidopsis defense transcriptome regulated at the
transcript isoform level
North Carolina State University, Raleigh
W016
Transcriptome diversity through alternative and antisense polyadenylation
Miami University
W018
Genome-wide methylation analysis of chicken primordial germ cells
North Carolina State University, Raleigh
W021
Feed efficiency in cattle: An epigenetic perspective
University of Missouri, Columbia
W033
From SNP discovery to SNP associations: Using next-generation sequencing and custom
arrays to create a high density genetic linkage map for the Silver Lipped Pearl Oyster,
Pinctada maxima
Centre for Sustainable Fisheries and
Aquaculture, James Cook University
W034
Rapid development of molecular resources for a freshwater mussel, Villosa lienosa (Bivalvia:
Unionidae) using a RNA-Seq-based approach
Auburn University
W035
Creation of a genomic resource and quantitative trait loci detection in Pacific Whiteleg
Shrimp Litopenaeus vannamei for selective breeding applications
Centre for Sustainable Fisheries and
Aquaculture, James Cook University
W038
RNA-Seq analysis of differentially expressed genes in channel catfish after Flavobacterium
columnare challenge
Auburn University
W041
Identification Of differentially expressed miRNAs potentially associated with egg quality in
Rainbow Trout (Oncorhynchus mykiss)
West Virginia University, Morgantown
W043
Towards the complete genome: Progress of Common Carp Genome Project
Center for Applied Aquatic Genomics,
Chinese Academy of Fishery Sciences
W044
An EST/RNAseq library and first-generation linkage map for Sablefish (Anoplopoma fimbria)
University of Victoria
W045
New in-depth Rainbow Trout transcriptome reference and digital atlas of gene expression
West Virginia University, Morgantown
W064
Design of an Illumina Infinium 6K SNPchip for genotyping two large Avocado mapping
populations
USDA-ARS SHRS
W068
The sequence of the Banana (Musa acuminata) genome
CIRAD
W073
Sequences of 14,600 gene-bearing minimal tiling path BACs of Morex Barley
University of California, Riverside
W081
An efficient pipeline for sequence based variant detection in commercial Chicken lines
Georg-August-University, Göttingen
W088
Efficient assembly of large genomes from short reads
University of Maryland, College Park
W097
B. napus genome sequence
URGV-INRA
W099
Comparative and population genomics in the Brassicaceae
University of Toronto
W100
Uncovering the ancestral blocks reveals the hexaploid genome of the emerging biofuel
crop, Camelina sativa
Agriculture and Agri-Food Canada
W111
Efficient whole genome assembly of mammalian genomes from short reads
University of Maryland, College Park
W112
Status of the Buffalo genome
Università della Tuscia
W113
The Buffalo transcriptome
Parco Tecnologico Padano
W114
SNP discovery across Buffalo breeds
USDA-ARS-ANRI-BFGL
W120
Comparative transcriptome analysis of Eucalyptus genotypes that differ in carbon allocation
EMBRAPA–Brazilian Agricultural
Research Corporation, Embrapa Forestry
W123
Identification, analysis and mapping of SNP markers in Theobroma cacao
USDA-ARS
W124
A core set of SNPs for Cacao genotyping
USDA-ARS SHRS
W126
Construction of genomic library of Theobroma cacao using genotyping by sequencing (GBS)
Cocoa Research Institute of Ghana
W136
GWAS data sharing
University of Sydney
W137
Genetic determinism and candidate genes for flowering date—A phenological trait highly
affected by climate change in Sweet Cherry
INRA
W144
Performance of Illumina and Affymetrix Bovine high density genotyping platforms in
Holsteins and Jerseys
Department of Animal Science,
University of California, Davis
W145
Differential gene expression detected via transcriptome sequencing in Angus steers
differing for feed efficiency
University of Missouri, Columbia
W151
Genome-wide association study of entropion eyelid in multiple breeds in Sheep
USDA-ARS
W153
Goat genome assembly, availability of an international 50K SNP chip and RH panel: An
update of the International Goat Genome Consortium projects
INRA
W158
Sheep Genome Project: Gap filling and unbalanced allelic expression
CSIRO Livestock Industries, on behalf
of the International Sheep Genomics
Consortium
W157
Whole genome sequencing for variant detection, disease gene identification and an
HD SNP chip for Sheep
CSIRO Livestock Industries
W164
Transcriptome of Ponkan mandarin (Citrus reticulata Blanco) in the early infection of
Xylella fastidiosa
Centro de Citricultura Sylvio Moreiral
W179
Overview of the genotyping-by-sequencing technology and its applications In diverse organisms
Cornell University
W185
Targeted analysis of polyploid Wheat genome by exon capture
Kansas State University, Manhattan
W188
Lettuce genome update
Genome Center,
University of California, Davis
W189
The Sunflower genome and its evolution
University of British Columbia, Vancouver
W190
Genomic resourses in Cynara cardunculus
DIVAPRA - Plant Genetics and Breeding,
University of Turin
W202
SNP-based genotyping in Lentil: Linking sequence information with phenotypes
University of Saskatchewan
W217
High-throughput sequencing makes TILLING more fun
University of California, Davis
W259
Cribbing: A compulsive behavior and its genetic component
University of Sydney
W262
Genome-wide across and within breed association studies in Horses
University of Veterinary Medicine Hannover
W281
The repetitive DNA of conifers–lessons from the Norway Spruce (Picea abies) genome
and resequencing of 5 other conifers
Science for Life Laboratory/Karolinska
Institute
W282
Differential transcriptomes during forming of epigenetic memory In Norway Spruce
Norwegian Forest and Landscape
Institute
W288
Exploring the megagenome of Pine by targeted resequencing
University of Florida, Gainesville
W291
The genome of Aspen (Populus tremula)–the most complex genome sequenced to date?
Umeå Plant Science Centre, Dept of Plant
Physiology, Umeå University
W296
Comparative genomics of 15 tropical Fagaceae species using shallow Illumina sequencing
and a reference-free approach
Chinese Academy of Sciences
W300
Association genetics of traits underlying secondary cell wall chemistry and ultrastructure in
Populus trichocarpa
University of British Columbia
W313
RosBREED: Infinium SNP genotyping in Prunus
Clemson University
W314
Genomic tools enhance power and precision of Hazelnut breeding
Oregon State University, Corvallis
W315
A draft assembly and analysis of the highly heterozygous diploid Red Raspberry genome
(Rubus idaeus cv. Heritage)
Cornell University, Geneva, NY
W317
Genome-wide SNP detection, validation, and development of an 8K SNP array for Apple
Plant and Food Research
W320
Genome sequencing and resource development for European Hazelnut cultivars
Oregon State University, Corvallis
W323
Finding function in complex crop genomes
University of Queensland
W332
Studying functional genomics with next-generation sequencing
Illumina
W333
Routine digital methylation profiling of population cohorts with bisulfite padlock probes
University of California, San Diego
W355
Applications of genome sequencing for Peanut improvement
University of California, Davis Genome
Center
W361
Identification of SNP haplotypes and prospects of association mapping in Watermelon
Gus R. Douglass Institute and
Department of Biology, West Virginia
State University
W363
Germplasm management in the post-genomics era—A case study with Lettuce
USDA- ARS
W426
Physical map and shotgun sequence of the Aegilops tauschii genome
University of California, Davis
W427
Towards a reference sequence of the Bread Wheat chromosome 3B
INRA GDEC
W439
Genomic diversity and sequence-based association analyses in Medicago truncatula
University of Minnesota, Saint Paul
W442
Transcriptome of common Bean (Phaseolus vulgaris) through RNA-seq: Nodulation,
symbiotic nitrogen fixation, transcription factors
Centro de Ciencias GenomicasUniversidad Nacional Autónoma de
México, Cuernavaca
W448
High resolution TranSNiPtomics: Gene expression and SNP detection in high throughput and
high resolution by “Massive Analysis of cDNA Ends” (MACE)
GenXPro-GmbH
W469
Development of a high-density SNP genotyping panel as a community resource for genetic
analysis in Oat
USDA-ARS
W474
Sequencing and genotyping in a complex genome: Current status and future possibilities
Illumina
W475
Identification of fertility restorers for S Male-Sterile Maize: Beyond PPRs
University of Florida, Gainesville
W512
Assembly of huge plant genomes from WGS data
University of Maryland, College Park
W528
Population genomics of vegetative phenology in Populus
West Virginia University, Morgantown
W530
Chilling requirement and bloom date in Peach: Genetic and genomic approaches for
deciphering a complex gene network
Clemson University
W539
The Potato Aphid transcriptome and salivary secretome
University of California, Riverside
W588
Search for genomic footprints of divergent selection from whole genome sequencing of
four experimental lines of Broiler Chickens
Department of Animal and Food Sciences,
University of Delaware, Newark
W627
Genomes to genes: Comparative genomic analysis in Prunoideae
Washington State University, Pullman
W628
The Potato genome sequencing project 2 years on: Comparison of strategies with related
projects and perspectives for the future of the world’s 3rd food crop
Wageningen-UR
W629
Just genes–well mostly: Genomic enrichment for Sugarcane genic regions
The University of Queensland
W644
Sequencing and comparison of the genomes of Petunia inflata and Petunia axillaris
Northern Illinois University
W646
Towards completion of the genome that makes Hot Pepper
Seoul National University
W659
Towards early-stage chilling tolerance for European energy sorghum
Justus-Liebig University Giessen,
Department of Plant Breeding
W680
Re-sequencing and hybrid assembly strategy of two nematode resistant Beta vulgaris
translocation lines
Christian Albrechts University of Kiel
W686
Genomic and epigenetic characterization of Sugarcane hybrids and wild relatives
IBqM/Universidade Federal do Rio
de Janeiro
W694
Whole genome re-sequencing of Pigs and Wild Boar reveals unexpected signatures in
variation related to biogeography, domestication, and hybridization
Wageningen University, Animal Breeding
and Genomics Centre
W695
Identification of QTLs and genes related to immune response to Poly (I:C) stimulation in a
Duroc-Erhualian F2 Pig population
Huazhong Agricultural University
W696
Genome-wide association of a novel Porcine stress-syndrome to dystrophin
USDA-ARS, USMARC
W718
Sequencing the obligate Oomycete plant pathogen, Bremia lactucae
University of California,
Davis Genome Center
W720
Genome sequence for the Apicomplexan Sarcosystis neurona
University of Georgia, Institute of
Bioinformatics, Center for Tropical and
Emerging Global Diseases & Department
of Genetics
posters
Program No.
Title
Primary Organization
P0001
ARK-Genomics Centre for Comparative and Functional Genomics
The Roslin Institute, University of
Edinburgh
P0007
Enhancing whole genome, transcriptome and metagenomic sequencing with
next-generation sequencing platforms
University of Illinois W. M. Keck Center,
Urbana
P0009
Repeat reduction in Illumina libraries prior to sequencing using duplex-specific nuclease
University of California, Davis Genome
Center
P0010
Rapid and efficient methods for preparing rRNA-depleted and directional Plant RNA-Seq libraries
Epicentre (an Illumina® company)
P0014
Resequencing in a mapping population
Southern Illinois University Carbondale
P0015
Exploring the genome diversity of Mycorrhizal Fungi–A JGI Sequencing Project update
Pennsylvania State University,
University Park
P0020
An evolutionary aspect for two subspecies of Oryza sativa and three wild accessions of
Oryza rufipogon
Mitsubishi Space Software Co., Ltd.
P0021
Analysis of the Oryza nivara genome
Institute of Plant Biology,
National Taiwan University
P0022
Reference-guided de novo genome assembly of the Indica Type Rice Variety IR 64 using
short-read sequencing
International Rice Research Institute
P0026
Gene content, loss, conservation and genetic variation among Triticum aestivum
group 7 chromosomes
Australian Centre for Plant
Functional Genomics
P0027
Sequence-ready, physical maps of chromosomes 1D, 4D, and 6D of hexaploid Wheat
Kansas State University, Manhattan
P0029
Whole genome shotgun sequencing and assembly to access the gene rich portion of the
genome of Lolium perenne L
Teagasc
P0030
De novo genome sequencing of perennial Ryegrass (Lolium perenne)
Department of Molecular Biology and
Genetics, Aarhus University
P0032
A gene expression atlas of developing Oat seeds for enhancing nutritional composition
USDA-ARS
P0033
A whole genome reference sequence of Amborella
University of Florida, Gainesville
P0040
De novo assembly of the Carrot mitochondrial genome
University of Wisconsin, Madison
P0042
Unraveling Chickpea transcriptome for gene discovery and marker development using
next generation sequencing technologies
National Institute of Plant
Genome Research
P0043
Using genomic approaches to study an economic important Weedy Plant
Conyza canadensis
University of Tennessee, Knoxville
P0044
Gossypium arboreum genome assembly using a sequence-based physical map
National Center for Genome Resources
P0049
Identification and characterization of microRNAs from Eugenia uniflora
Laboratory of Genomes and Plant
Population, Center of Biotechnology,
Federal University of Rio Grande do Sul
P0050
Genome size evolution in the genus Genlisea—From half of the A. thaliana genome to
the twenty-fold
Max Planck Institute for Plant Breeding
Research (MPIPZ)
P0051
Identification of rhizome-specific transcripts, putative TFs and SNPs in Ginger using
next-generation sequencing technology
Institute of Biological Chemistry,
Washington State University, Pullman
P0054
Alfalfa genome sequencing efforts: Strategies and progress
Noble Foundation
P0055
Next generation sequencing of Medicago truncatula plastid genomes
Rutgers University,
Waksman Institute of Microbiology
P0061
RNA-seq reveals extensive diversity among Potato genomes and functional complexity
of organ and transgene specific defense mechanisms against the Late Blight Pathogen
(Phytopthora infestans)
Department of Plant Pathology,
University of Minnesota
P0062
Transcriptome characterization for genome annotation and functional genomics In Pyrus spp
Nanjing Agricultural University
P0064
Comparative genomic analysis in Prunoideae
Washington State University, Pullman
P0067
Sequencing and analysis of the Rotylenchulus reniformis transcriptome
Institute for Genomics, Biocomputing, and
Biotechnology, Mississippi State University
P0070
Resequencing of recombination inbred line populations reveals the landscape of SNP
distribution and recombination patterns in Soybean
University of Missouri, Columbia
P0071
Towards a first draft of the octoploid Strawberry genome sequence
IRTA, Centre for Research in Agricultural
Genomics
P0078
Branching out–Expanding the sequencing of the mammalian tree
Broad Institute
P0080
Variation detection in the Bos taurus genome using novel in-solution exome capture
Cofactor Genomics
P0082
Whole-genome sequencing identifies multiple protein function affecting variants within QTL
regions for pulmonary hypertension syndrome in Chicken
Wageningen University, Animal Breeding
and Genomics Centre
P0083
Analysing the Buffalo genome
Parco Tecnologico Padano
P0084
Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
National Center for Genome Resources
(NCGR)
P0085
Challenges and opportunities for improving the Atlantic Cod genome assembly and
annotation
University of Oslo
P0086
De novo transcriptome assembly of the plant-parasitic nematode Aphelenchoides fragariae
School of Agricultural, Forest, and
Environmental Sciences, Clemson University
P0089
De novo assembly of Campylobacter fetus subspecies and biovars genomes reveal unique
features in pathogenecity islands
Centre for Comparative Genomics,
Murdoch University
P0104
Validation of VERSA Mini NGLP for automated library preparation with the Illumina platform
Aurora Biomed
P0106
Automation of library preparation for high-resolution ChIP-seq profiling
University of California, Davis
P0112
Long-span, mate-pair pNGS-FOS libraries and applications
Lucigen Corporation
P0114
Sequences of 14,600 gene-bearing minimal tiling path BACs of Morex Barley
University of California, Riverside
P0117
Global allele-specific expression reveals the molecular basis of general combining ability
State Key Laboratory of Hybrid Rice,
College of Life Science, Wuhan University
P0121
Using Sequenom to study gene expression and gene loss in natural and synthetic polyploid
generations (Tragopogon, Asteraceae)
University of Florida, Gainesville
P0124
Identification of differentially expressed microRNAs associated with PRRSV infection
North Carolina State University, Raleigh
P0125
Genotyping-by-sequencing (GBS) in Sheep
AgResearch Ltd. Invermay Agricultural
Centre
P0126
Transcriptome sequencing of Water Buffalo embryos
Parco Tecnologico Padano
P0127
Transcript profiling differentiates healthy control, sub-clinical and clinical Johne's Disease
in Dairy Cattle
National Center for Genome Resources
P0129
SNP-calling in the Zebrafish Mutation Project
Wellcome Trust Sanger Institute
P0130
The Zebrafish Mutation Project: Systematic genome-wide identification of knockout alleles
in the Zebrafish using whole exome enrichment and Illumina sequencing
Wellcome Trust Sanger Institute
P0133
New NEBNext reagents and adaptors for NGS library preparation
New England Biolabs
P0137
Phylogenomics of organelles using Illumina sequence data
University of Missouri, Columbia
P0150
Genotyping-by-sequencing for mapping phenotypic traits in T. cacao
Stanford University
P0170
Using multiplexed massively parallel sequencing to aid genetic conservation and
restoration in Port-Orford-cedar
USDA Forest Service
P0182
Mass genotyping by sequencing technology
Eureka Genomics
P0184
Application of random sequence-based genotyping (rSBG) in crops
KeyGene
P0189
SNP mining in the genome of Barley
Leibniz Institute of Plant Genetics and
Crop Plant Research (IPK)
P0192
Characterising genetic variation in Lolium perenne breeding populations using a genotype
by sequencing approach
Department of Molecular Biology and
Genetics, Aarhus University
P0199
Genome-wide SNP development and validation for Allotetraploid Gossypium
Texas A&M University
P0201
A 1536-plex Oil Palm SNP set for genetic mapping and identification of markers associated
with Oil Palm fruit colour
Malaysian Palm Oil Board
P0202
High-density SNP mapping on Peach (Prunus persica L. Batsch) populations
University of California, Davis
P0203
Genome-wide assessment of SNPs in Peanut using Illumina (Solexa) sequencing
Texas Tech University
P0205
High density genetic mapping of Sunflower
Department of Plant Biology,
University of Georgia
P0206
The genetics of branching in Sunflower
University of Georgia, Athens
P0207
Association genetics in cultivated Sunflower
University of Georgia, Athens
P0208
High-density SNP analysis of cultivated Tomato (Solanum lycopersicum L.)
The Ohio State University/OARDC, Wooster
P0209
Effects of the Porcine 384-SNP assay system using selected SNPs for meat quality
College of Life Sciences and
Biotechnology, Korea University
P0211
Genomic evaluation for litter size in Canadian Yorkshire pigs
Canadian Centre for Swine Improvement Inc.
P0213
An approach for genome-wide characterization of nsSNPs using the Illumina
BovineHD SNPchip
Universidad Autónoma de Baja California
P0225
Genomic studies of the Coconut (Cocos nucifera L.)
The Australian National University
P0227
Developing market-class specific indel markers from next generation sequence data
in Phaseolus vulgaris
Genomics and Bioinformatics Program,
North Dakota State University, Fargo
P0239
A pipeline for transcriptome assembly and SNP identification in highly heterozygous crops
Institute for Agricultural and Fisheries
Research (ILVO)
P0251
Developing a high-throughput SNP genotyping workflow to support breeding applications in Rice
International Rice Research Institute
P0262
Isolation of Rice genes involved in important agronomic traits using
whole genome resequencing
Iwate Biotechnology Research Center
P0274
Identification of candidate genes in Rice for resistance to Sheath Blight Disease by
whole genome sequencing
Louisiana State University Agricultural
Center, Baton Rouge
P0295
Characterizing the effects of down-regulating the GPC genes on the Wheat transcriptome
during monocarpic senescence in Wheat
University of California, Davis
P0309
Mining high water and nitrogen use efficient Wheat (T. aestivum L.) genotypes in the
USDA-ARS National Small Grains Collection
University of Idaho
P0315
Discovery of Puccinia striiformis f.sp. tritici effectors by whole genome resequencing and
comparative genomics
John Innes Centre
P0332
Genetic dissection of the domestication syndrome in tetraploid Wheat
University of California, Davis
P0338
Development of chromosome genomics in wild relatives of Wheat (Aegilops spp.)
Institute of Experimental Botany
P0346
Structural and temporal variation in the genetic diversity of a European collection of
Barley cultivars and utility for association mapping of quantitative traits
CRA–Genomics Research Centre
P0353
Annotation of miRNAs from developing Sseeds in Avena sativa
University of North Carolina, Charlotte
P0359
A large Maize SNP genotyping array: Development and germplasm genotyping, and
genetic mapping to compare with the B73 reference genome
TraitGenetics GmbH
P0378
RNA-Seq in Puccinia melanocephala susceptible and resistant Sugarcane
USDA-ARS
P0386
Identification of key genes involved in cell death and defense responses to pathogens in
Arabidopsis using next generation sequencing strategy and the lesion mimic mutant vad1
CNRS-INRA
P0390
Genetic diversity in C genome diploid Brassicas
University of Warwick
P0392
SNP analysis in Brassica napus
University of Queensland
P0393
Mutation detection in Brassica napus using Illumina sequencing
National Research Council, Saskatoon
P0394
PCR-based screening platform for an Oilseed Rape BAC library
Leibniz Institute of Plant Genetics and
Crop Plant Research (IPK)
P0398
High density SNP consensus map a useful tool for Rapeseed genomic
Biogemma
P0410
Curating the Medicago truncatula genome
J. Craig Venter Institute
P0418
Development and evaluation of a high-density Illumina Infinium iSelect BeadChip
SoySNP50K
USDA-ARS, Soybean Genomics and
Improvement Lab
P0432
Genome-wide transcriptional analysis of five-foliate leaf mutant and wild type
Soybean isolines
University of Illinois, Urbana
P0455
Improvement of information and material resources of Lotus japonicus
Kazusa DNA Research Institute
P0467
The transcriptome of Tomato (S. lycopersicum)
Italian Agency for New Technologies
Energy & Sustainable Development
P0468
Comparative genomics of Solanum galapagense, a wild relative of Tomato
Boyce Thompson Institute for Plant
Research
P0480
Genome-wide SNP discovery from de novo assemblies of
Pepper (Capsicum annuum) transcriptomes
Seed Biotechnology Center,
University of California, Davis
P0483
Development of a saturated linkage map for Apple using a high-throughput
GoldenGate SNP platform
Department of Natural Resources and
Environmental Sciences, University of
Illinois, Urbana-Champaign
P0488
Deep re-sequencing of Apricot genome toward genome-wide association analysis in
Stone Fruit species
Clemson University
P0491
Simultaneous mapping and candidate gene identification in Peach via sequencing of
pooled genomes (Pnomes)
USDA-ARS
P0492
Application of high throughput genotyping techniques in Peach germplasm and breeding
lines within the FruitBreedomics Project
IRTA-Consortium CSIC-IRTA-UAB-UB.
Centre of Research in Agricultural
Genomics (CRAG)
P0494
Sequence analysis of 16 ethylene-related genes in “Stony Hard” Peach using NGS data
CRA–Fruit Tree Research Center
P0504
Introns and exons in Citrus genome
Centro de Citricultura Sylvio Moreira, IAC
P0511
Prunus mume draft genome
Beijing Forestry University
P0514
Genome-wide gene diversity of two Pinus species
University of Florida, Gainesville
P0515
Transcriptome dynamics in the dormancy-­spring growth transition of Douglas Fir Needles
US Forest Service
P0519
Genomic resources for Black Cherry
Pennsylvania State University,
University Park
P0520
The Chinese Chestnut (Castanea Mollissima) Genome Project
Pennsylvania State University
P0522
Generation of a Eucalyptus globulus reference genome and gene catalogue
GYDLE
P0542
An integrated approach to Cattle epigenomics: Genome-wide methylome and histone
modification profiling
Dept. for Innovation in Biological, Agrofood and Forest systems, University of
Tuscia
P0543
High throughput SNP discovery in the Bovine lactome by RNA sequencing
Department of Animal Science,
University of California, Davis
P0550
Validation of Bovine selective sweeps using high resolution SNP data
University of Missouri, Columbia
P0552
Comparison of different bayesian methods for QTL mapping in Hereford Beef Cattle
using 1 Mb Windows
Iowa State University, Ames
P0553
Utilising information from heterogeneous SNP panels for genome analysis in Dairy Cattle
University of Sydney
P0556
Genome-wide association analysis of Paratuberculosis susceptibility in US Jersey Cattle
Department of Animal Sciences,
University of Wisconsin, Madison
P0559
A mutation in Hephaestin-Like 1 (HEPHL1) is responsible for hypotrichosis in Belted
Galloway Cattle
University of Illinois, Urbana
P0560
SNP array based identification of copy number variants in Italian Brown Swiss Cattle
Università degli Studi di Milano
P0561
Hunting for the weaver causative mutation in Brown Swiss Cattle
BFGL, ARS-USDA
P0562
Large-scale identification of the causative genetic variants influencing traits of economic
interest in French Dairy breeds
Animal Genetics and Integrative Biology
P0564
Polymorphisms in positional candidate genes on BTA3 and BTA13 affect carcass quality in
Hanwoo Cattle
Chungbuk National University
P0565
A whole genome association study to detect SNPs for growth and carcass qualtiy traits in
Korean native cattle, Hanwoo
Yeungnam University
P0567
A genome wide association analysis for carcass traits in Beef Cattle
University of Illinois, Urbana
P0569
Deep mRNA sequencing for transcriptome profiling of skeletal muscle tissues
Dept. of Ecology and Biology,
University of Tuscia
P0576
Development and characterisation of a low density (5K) Illumina Ovine SNP chip
AgResearch
P0577
Development of a SNP panel for parentage assignment in Sheep
CSIRO Livestock Industries
P0578
The use of a 50K SNP array for identifying genomic regions associated with a range of traits
in Rambouillet Sheep
Utah State University, Logan
P0581
Validation of a low density SNP panel for breed certification testing in Brazilian
Sheep (Ovis aries) breeds as a tool for flock genetic management
EMBRAPA Recursos Geneticos e
Biotecnologia
P0586
A region on ovine chromosome 2 is associated with brachygnathia, cardiomegaly and renal
hypoplasia syndrome (BCRHS) in Merino Sheep
University of Sydney
P0587
A heritable AGTPBP1 missense mutation is responsible for a lower motor neuron disease in
Romney Sheep
Iowa State University, Ames
P0589
Ovine GM1-gangliosidosis is caused by a mutation in GLB1
University of Illinois, Urbana
P0591
Mapping the dark eye patching gene in Churra and Ojalada Spanish Sheep breeds
Universidad de Leon
P0598
Insight into human directed selection through comparison of gene expression patterns
between modern and heritage Chicken lines
University of Delaware, Newark
P0612
Spleen transcriptome response to aflatoxin in the domestic Turkey
University of Minnesota, St. Paul
P0614
Sequencing radiation hybrids for genome assembly: Example of the Duck genome
Institut National de la Recherche
Agronomique
P0617
Pig Genome 10.2 annotation and gene prediction using mRNA and microRNA
sequencing evidence
Aarhus University, Department of
Molecular Biology and Genetics
P0623
Efficiency of heterologous capture for targeted resequencing of the major histocompatibility
complex in Suidae and Tayassuidae
INRA, UMR GABI
P0633
Associations between multiple single nucleotide polymorphisms (SNPs) in 33 candidate
genes and meat quality traits in commercial Pigs
University of Alberta, Edmonton
P0634
GWAS and beyond: Unravelling complex genomic variation in Boar Taint
The Roslin Institute and Royal (Dick)
School of Veterinary Studies, University
of Edinburgh
P0648
A genome-wide association study identifies locus for eye color variation in Puerto Rican
Paso Fino Horses
University of Tampa
P0650
Genome wide association of sarcoid tumors in Horses
Cornell University
P0651
Candidate gene evaluation of Equine neuroaxonal dystrophy based on genome-wide
association analysis
University of California, Davis
P0652
Genetic determinants in Equine cervical stenotic myelopathy
University of Kentucky, Lexington
P0654
Towards the complete genome: Progress of Common Carp Genome Project
Center for Applied Aquatic Genomics,
Chinese Academy of Fishery Sciences
P0657
Comprehensive annotation of the transcriptome of Channel Catfish (Ictalurus punctatus) by
paired-end RNA-Seq
Auburn University
P0659
RNA-Seq analysis of differentially expressed genes in Channel Catfish after Flavobacterium
columnare challenge
Auburn University
P0661
Identification of genes associated with heat tolerance in Catfish exposed to chronic
thermal stress using RNA-Seq
Auburn University
P0663
New in-depth Rainbow Trout transcriptome reference and digital atlas of gene expression
West Virginia University, Morgantown
P0665
Identification of differentially expressed miRNAs potentially associated with egg quality in
Rainbow Trout (Oncorhynchus mykiss)
West Virginia University, Morgantown
P0667
RAD sequencing applications in three species of Columbia River fishes
Columbia River Intertribal Fish
Commission
P0668
Identification of 2 novel interleukin 1 beta family genes in Japanese flounder Paralichthys olivaceus
Tokyo University of Marine Science
and Technology
P0671
Identification of quantitative trait loci associated with caviar yield and ovarian adiposity in
White Sturgeon (Acipenser transmontanus)
University of California, Davis
P0679
Sequencing Brachypodium insertional mutants using TDNA-Seq
USDA
P0689
Markers development and linkage analysis in Cynara cardunculus L
DIVAPRA Plant Genetics and Breeding,
University of Turin
P0690
High density SSR- and SNP-based genetic maps of Flax
University of Mantioba, Winnipeg
P0695
Quick determination of chloroplast whole genome of Magnolia kobus DC., a deciduous
Magnolia, using Solexa/Illumina technology
Teragen Co.
P0700
A sequence-based physical map of the Sunflower (Helianthus annuus L.) genome
University Of British Columbia, Vancouver
P0710
Detection of single nucleotide variation in Polar, Black and Brown Bears using a next
generation sequencing approach
Department of Animal Science, University
of California, Davis
P0713
Comparative analysis of the Marmoset (Callithrix jacchus) genome, an initial report of a
highly unusual new world primate
Human Genome Sequencing Center,
Baylor College of Medicine
P0714
Bodyweight: Genetic aspects in an experimental Cat population
University of Sydney
P0726
The Camelina sativa Genome Project: An emerging stress-tolerant biofuel seed crop
in the Brassicaeae
Pennsylvania State University,
University Park
P0727
Cassava genome from ancestor to cultivar
Institute of Tropical Biosciences &
Biotechnology, CATAS
P0743
Quantitative genetic analysis of wood chemistry and biomass traits in Sunflower
University of Georgia, Athens
P0793
An improved rRNA removal process for RNA-Seq library preparation
Epicentre (an Illumina comapny)
P0797
Expression differences in six Puccinia triticina races and their effect on Wheat
USDA-ARS
P0807
De novo hybrid transcriptome assembly and RNA-Seq analysis of Switchgrass crowns
and rhizomes
USDA-ARS
P0808
Expression analysis of endophyte-infected and endophyte-free Tall Fescue
USDA-ARS
P0819
Monitoring expression profiling of a set of abiotic and biotic stress responsive candidate
genes in Chickpea (Cicer arietinum L.) through qRT-PCR
International Crops Research Institute for
the Semi-Arid Tropics (ICRISAT)
P0822
Investigating the novel sesquiterpene biosynthesis pathway in Copaifera officinalis, ‘the Diesel
Tree,' through next-generation de novo transcriptome sequencing and functional genomics
University of Tennessee, Knoxville
P0825
Investigation of suberin biosynthesis using Cotton fibers
National Center for Genome Resources
P0829
Quantitative differential gene expression in Peach during short-day induced growth cessation
School of Agricultural, Forest &
Environmental Sciences,
Clemson University
P0835
Using RNASeq to profile Soybean seed development from fertilization to maturity
University of Illinois, Urbana
P0838
Endogenous siRNAs that silence chalcone synthase result in pigment pattern formation
on seed coats in Glycine max
University of Illinois, Urbana
P0839
Identification of differentially expressed genes in Fiskeby III under ozone stress conditions
University of North Carolina, Charlotte
P0844
Transcriptome response to acute thermal stress in juvenile Chinook Salmon
University of California, Davis
P0860
Functional genomics of nitrogen metabolism in Maize kernels grown in culture
University of Illinois, Urbana-Champaign
P0863
Mapping cell fate decisions that occur during Soybean defense responses
Mississippi State University
P0868
Effects of nitrogen fertilization on global xylem transcript profiling of Eucalyptus urophylla x
grandis evaluated by RNA-seq technology
UNICAMP
P0874
Discovery and characterization of conserved and novel miRNAs of leaf, root and fiber of Cotton
Auburn University
P0916
Systems approach to the understanding of metabolic diversity in Melon
Agricultural Research Organization
P0925
The extent of LD in the domestic Cat Felis catus
University of California, Davis
P0937
Gene expression and SNP detection in high throughput and high resolution by
“Massive Analysis of cDNA Ends” (MACE)
GenXPro-GmbH
P0953
The Triticeae toolbox (T3): Containing keys to unlock the Triticeae genome and phenome
USDA-ARS-WRRC
P0957
BraMRs: A novel Brassica rapa miRNA database based on small RNA deep-sequencing
National Academy of Agricultural
Science, RDA
P0966
Updates in GDR, the genome database for Rosaceae
Washington State University, Pullman
P0982
PAVE: Integrated transcript analysis
University of Arizona/Bio5 Institute,
Tucson
P0985
A new statistical method for gene discovery from large-scale gene expression data with
next-generation sequencing technology
Meiji University
P0989
Improving draft genome assemblies using next-gen data with gap-filling and scaffolding
assembly tools
Human Genome Sequencing Center,
Baylor
College of Medicine
P0990
Extensive analysis of parameter tuning effects in a de novo assembly pipeline based on
short reads
Keio University
P1015
Efficient de novo computation of ultra-high density genetic maps from RAD marker sequencing
Max Planck Institute for Developmental
Biology
P1022
Accuracy of imputed 50k genotypes from 3k and 6k chips in Dairy Cattle breeds using FImpute
University of Guelph
P1024
De novo assembly and annotation of a Dinoflagellate transcriptome from 2nd generation
sequencing technology
University of Maryland, College Park
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