Determining the Transcription Factor Genes Populating a Fruit Fly
... transcription factor genes that encode proteins that bind to DNA in a sequence specific manner, and differentiation genes that encode proteins responsible for making a cell or tissue phenotype (Davidson, 2006). The expression patterns for network genes are controlled by a cis-regulatory element (CRE ...
... transcription factor genes that encode proteins that bind to DNA in a sequence specific manner, and differentiation genes that encode proteins responsible for making a cell or tissue phenotype (Davidson, 2006). The expression patterns for network genes are controlled by a cis-regulatory element (CRE ...
13-Alanine as an Ethylene Precursor
... obtained when the cofactors and substrate necessary for the conversion of /8-alanine to ethylene (26) were added to a suspension of 0.5 g lyophilized particulate fraction (crude enzyme system). From both experiments, it can be seen that the added compounds caused a significant increase in ethylene p ...
... obtained when the cofactors and substrate necessary for the conversion of /8-alanine to ethylene (26) were added to a suspension of 0.5 g lyophilized particulate fraction (crude enzyme system). From both experiments, it can be seen that the added compounds caused a significant increase in ethylene p ...
Complete genome sequence of the prototype lactic acid bacterium
... basis of the presence of potential ribosomal binding sites, sequence alignments, and available data in the literature. Potential alien genes on the L. lactis genome sequence were identified using the program SIGI (for score-based identification of genomic islands) (69), based on the scoring of codon ...
... basis of the presence of potential ribosomal binding sites, sequence alignments, and available data in the literature. Potential alien genes on the L. lactis genome sequence were identified using the program SIGI (for score-based identification of genomic islands) (69), based on the scoring of codon ...
UNIVERSITAT ROVIRA I VIRGILI CODON USAGE ADAPTATION IN PROKARYOTIC GENOMES
... property of these enzymes (38). Comparative analysis of the amino acid composition of orthologous proteins from several mesophilic and thermophilic organisms indicated some amino acid substitutions that are preferred in thermophiles (38). However, the small number of sequences analyzed and the fact ...
... property of these enzymes (38). Comparative analysis of the amino acid composition of orthologous proteins from several mesophilic and thermophilic organisms indicated some amino acid substitutions that are preferred in thermophiles (38). However, the small number of sequences analyzed and the fact ...
Specificity of Insertion by the Translocatable Tetracycline Resistance Element Tn10.
... Since the conclusions from this analysis depend critically on the independent occurrence of each his::TnIOinsertion studied, care was taken to insure that this requirement was met. Many independent mixtures of phage and cells were made, and only one his: :TdO insertion was saved from each adsorption ...
... Since the conclusions from this analysis depend critically on the independent occurrence of each his::TnIOinsertion studied, care was taken to insure that this requirement was met. Many independent mixtures of phage and cells were made, and only one his: :TdO insertion was saved from each adsorption ...
gsea user guide
... Expression data. GSEA works with expression data from any source. Although different processing methods produce different types of expression values (for example, natural scale versus logged expression levels for Affymetrix data, or Affymetrix data versus two-color ratio data), any type of expressio ...
... Expression data. GSEA works with expression data from any source. Although different processing methods produce different types of expression values (for example, natural scale versus logged expression levels for Affymetrix data, or Affymetrix data versus two-color ratio data), any type of expressio ...
pdf
... and a plasmid (40,420 bp) that contain 3,052 and 41 candidate protein-encoding genes, respectively. The genes encoding proteins necessary for the function of known modes of lithotrophy and autotrophy were identified. Contrary to betaproteobacterial nitrifier genomes, the N. oceani genome contained t ...
... and a plasmid (40,420 bp) that contain 3,052 and 41 candidate protein-encoding genes, respectively. The genes encoding proteins necessary for the function of known modes of lithotrophy and autotrophy were identified. Contrary to betaproteobacterial nitrifier genomes, the N. oceani genome contained t ...
A survey on computational methods for enhancer and
... analysis with paired-end tag sequencing (ChIA-PET) (Fullwood et al. 2009). Hi-C and ChIA-PET have facilitated whole-genome identification of DNA regions that are in close proximity in the three-dimensional genome structure but are not necessarily adjacent to each other in the primary DNA sequence, w ...
... analysis with paired-end tag sequencing (ChIA-PET) (Fullwood et al. 2009). Hi-C and ChIA-PET have facilitated whole-genome identification of DNA regions that are in close proximity in the three-dimensional genome structure but are not necessarily adjacent to each other in the primary DNA sequence, w ...
Introduction to Genetics
... people, it is critical to the student of biology. Genetics provides one of biology’s unifying principles: all organisms use nucleic acids for their genetic material and all encode their genetic information in the same way. Genetics undergirds the study of many other biological disciplines. Evolution ...
... people, it is critical to the student of biology. Genetics provides one of biology’s unifying principles: all organisms use nucleic acids for their genetic material and all encode their genetic information in the same way. Genetics undergirds the study of many other biological disciplines. Evolution ...
BT314 Virology
... people, it is critical to the student of biology. Genetics provides one of biology’s unifying principles: all organisms use nucleic acids for their genetic material and all encode their genetic information in the same way. Genetics undergirds the study of many other biological disciplines. Evolution ...
... people, it is critical to the student of biology. Genetics provides one of biology’s unifying principles: all organisms use nucleic acids for their genetic material and all encode their genetic information in the same way. Genetics undergirds the study of many other biological disciplines. Evolution ...
Novel pathogen-specific primers for the detection of Agrobacterium
... limits the efficiency of PCR. For example, the virC-specific primers amplify the corresponding sequences from A. tumefaciens (SAWADA et al. 1995), but not from A. vitis (SZEGEDI and BOTTKA, 2002). Although an improved virCspecific primer pair detected some A. vitis strains (KAWAGUCHI et al. 2005), comp ...
... limits the efficiency of PCR. For example, the virC-specific primers amplify the corresponding sequences from A. tumefaciens (SAWADA et al. 1995), but not from A. vitis (SZEGEDI and BOTTKA, 2002). Although an improved virCspecific primer pair detected some A. vitis strains (KAWAGUCHI et al. 2005), comp ...
18. The Reference Sequence (RefSeq) Project
... cases that are identified through user input or analysis. The curation process includes analysis of a suite of precomputed BLAST results, literature review, review of available database and Web resources (both in-house and external), and collaboration to curate the nucleotide and protein sequence da ...
... cases that are identified through user input or analysis. The curation process includes analysis of a suite of precomputed BLAST results, literature review, review of available database and Web resources (both in-house and external), and collaboration to curate the nucleotide and protein sequence da ...
Transvection Is Common Throughout the Drosophila
... gen) of the vector used to introduce the CRM-GAL4. A schematic of an integrated CRM-GAL4 is shown in Figure 1A. While screening through CRM-GAL4s that had been integrated into attP2, we identified two transgenes, R24B02GAL4 and R58G08-GAL4, that drove expression in neuroblast hemilineages 12A and 3A ...
... gen) of the vector used to introduce the CRM-GAL4. A schematic of an integrated CRM-GAL4 is shown in Figure 1A. While screening through CRM-GAL4s that had been integrated into attP2, we identified two transgenes, R24B02GAL4 and R58G08-GAL4, that drove expression in neuroblast hemilineages 12A and 3A ...
Pseudomon-1 motif
... Relatively little is known about most of our new-found motifs, but we believe it is useful to give them a mnemonic name that reflects some current knowledge of the RNA, its source, or its associated genes. Thus, motifs present only in metagenome data are named after the environment from which they w ...
... Relatively little is known about most of our new-found motifs, but we believe it is useful to give them a mnemonic name that reflects some current knowledge of the RNA, its source, or its associated genes. Thus, motifs present only in metagenome data are named after the environment from which they w ...
Standard PDF - Wiley Online Library
... uppercase, such as Msg1. Some of the P. carinii genome is comprised of DNA sequences that are present dozens of times. Three families of such repeated DNA sequences have been described. Two of these families (MSG and PRT) encode proteins. The third family is the telomere repeat, which is found at th ...
... uppercase, such as Msg1. Some of the P. carinii genome is comprised of DNA sequences that are present dozens of times. Three families of such repeated DNA sequences have been described. Two of these families (MSG and PRT) encode proteins. The third family is the telomere repeat, which is found at th ...
A Physical Gene Map of the Bacteriophage P22 Late
... DNA (5.22 kb; Fiers et al., 1978) or pBR322 form II dimer (8.72 kb; Sutcliffe, 1978) DNA was present in all samples as -an internal length standard. Recombination and complementation of P22 mutants with cloned fragments of P22 DNA. Plasmid DNA containing cloned P22 fragments was isolated from E. col ...
... DNA (5.22 kb; Fiers et al., 1978) or pBR322 form II dimer (8.72 kb; Sutcliffe, 1978) DNA was present in all samples as -an internal length standard. Recombination and complementation of P22 mutants with cloned fragments of P22 DNA. Plasmid DNA containing cloned P22 fragments was isolated from E. col ...
"RNA Interference in Caenorhabditis elegans".
... specified by a total of only 1000 somatic cells. Due to the highly stereotyped celldivision patterns, the origins and fates of each cell in the embryo and adult are known (Sulston and Horvitz, 1977; Sulston et al., 1983). Consequently, perturbations of the developmental program can be traced to cha ...
... specified by a total of only 1000 somatic cells. Due to the highly stereotyped celldivision patterns, the origins and fates of each cell in the embryo and adult are known (Sulston and Horvitz, 1977; Sulston et al., 1983). Consequently, perturbations of the developmental program can be traced to cha ...
Analysis of the Molecular Basis of Flowering Time Variation in
... alleles are fully functional and confer very late flowering in the presence of the strong Col FLC allele. Given the identical amino acid sequence, it is likely that the three accessions Shakhdara, Kondara, and Kz-9 carry the same functional FRI allele. The F1 plants from the cross of Kz-9 to FRI(Sf2 ...
... alleles are fully functional and confer very late flowering in the presence of the strong Col FLC allele. Given the identical amino acid sequence, it is likely that the three accessions Shakhdara, Kondara, and Kz-9 carry the same functional FRI allele. The F1 plants from the cross of Kz-9 to FRI(Sf2 ...
Par-1
... machinery Many components of RNAi machinery have been identified through genetic screening for RNAi defective mutants and through biochemical studies using cell extracts (e.g. Drosophila embryo extract). ...
... machinery Many components of RNAi machinery have been identified through genetic screening for RNAi defective mutants and through biochemical studies using cell extracts (e.g. Drosophila embryo extract). ...
New variants of the tet(M) gene in Clostridium
... Sequence analysis revealed that except for tet(M)1, which was 100% identical to the tet(M) gene found in Streptococcus agalactiae 2603V/R (GenBank accession no. AE014233), the other alleles did not show complete identity with other tet(M) genes. The phylogenetic tree obtained by nucleotide sequence ...
... Sequence analysis revealed that except for tet(M)1, which was 100% identical to the tet(M) gene found in Streptococcus agalactiae 2603V/R (GenBank accession no. AE014233), the other alleles did not show complete identity with other tet(M) genes. The phylogenetic tree obtained by nucleotide sequence ...
Wolbachia–host interactions: connecting phenotype to genotype
... parasites of insects is becoming complicated as an increasing number of papers describe a richer picture of Wolbachia-mediated phenotypes in insects. The search for the molecular basis for this phenotypic variability has been greatly aided by the recent sequencing of several Wolbachia genomes. These ...
... parasites of insects is becoming complicated as an increasing number of papers describe a richer picture of Wolbachia-mediated phenotypes in insects. The search for the molecular basis for this phenotypic variability has been greatly aided by the recent sequencing of several Wolbachia genomes. These ...
The Complex Inheritance of Maize Domestication Traits and Gene
... I want to extend my thanks to John Doebley for making this dissertation possible. John has been a constant voice of encouragement and insight throughout my graduate career. He has been instrumental in keeping me focused on the big question, while allowing me the freedom to chase down side interests ...
... I want to extend my thanks to John Doebley for making this dissertation possible. John has been a constant voice of encouragement and insight throughout my graduate career. He has been instrumental in keeping me focused on the big question, while allowing me the freedom to chase down side interests ...
Cells: building blocks of living organisms
... The self-replicating genetic structures of cells containing the cellular DNA that bears in its nucleotide sequence the linear array of genes. In prokaryotes, chromosomal DNA is circular, and the entire genome is carried on one chromosome. Eukaryotic genomes consist of a number of chromosomes whose D ...
... The self-replicating genetic structures of cells containing the cellular DNA that bears in its nucleotide sequence the linear array of genes. In prokaryotes, chromosomal DNA is circular, and the entire genome is carried on one chromosome. Eukaryotic genomes consist of a number of chromosomes whose D ...
Transposable element
A transposable element (TE or transposon) is a DNA sequence that can change its position within the genome, sometimes creating or reversing mutations and altering the cell's genome size. Transposition often results in duplication of the TE. Barbara McClintock's discovery of these jumping genes earned her a Nobel prize in 1983.TEs make up a large fraction of the C-value of eukaryotic cells. There are at least two classes of TEs: class I TEs generally function via reverse transcription, while class II TEs encode the protein transposase, which they require for insertion and excision, and some of these TEs also encode other proteins. It has been shown that TEs are important in genome function and evolution. In Oxytricha, which has a unique genetic system, they play a critical role in development. They are also very useful to researchers as a means to alter DNA inside a living organism.