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Transcript
[Type here]
[Type here]
[Type here]
Cathryn Kurkjian, PhD
Postdoctoral Trainee
University of North Carolina,
Chapel Hill
Email: [email protected]
Twitter: @Cate_Kurkjian
Image from: http://icsjournal.org/2015/03/02/dna-building-blocks-of-nanotechnology/
DNA Transcription and Translation
Cathryn Kurkjian
Contents
Grade Levels ................................................................................................................................................. 2
Subject Area ................................................................................................................................................. 2
Objectives ..................................................................................................................................................... 2
Method ......................................................................................................................................................... 2
Materials....................................................................................................................................................... 2
Duration ........................................................................................................................................................ 2
Group Size ..................................................................................................................................................... 2
Key Words..................................................................................................................................................... 3
Background ................................................................................................................................................... 3
Procedure ..................................................................................................................................................... 4
Flip the classroom! .................................................................................................................................... 4
Engage ....................................................................................................................................................... 4
Explore ...................................................................................................................................................... 4
Explain ....................................................................................................................................................... 5
Elaborate ................................................................................................................................................... 6
Evaluate..................................................................................................................................................... 6
Resources...................................................................................................................................................... 7
Standards ...................................................................................................................................................... 7
NC essential Standards.............................................................................................................................. 7
Common Core (grades 9-10) ..................................................................................................................... 7
Common Core (grades 11-12) ................................................................................................................... 7
Next Generation Science Standards ......................................................................................................... 8
Amino Acids sheet (cut-outs for activity) .................................................................................................... 9
DNA sequence sheet (cut-out for activity ................................................................................................. 10
Student Handout ........................................................................................................................................ 11
1
DNA Transcription and Translation
Cathryn Kurkjian
Grade levels: High school (9-12)
Subject areas: Biology
Objective:
 Practice note taking skills and engage in active learning
 Describe various molecules found within cells (i.e. DNA, RNA, genes, proteins, amino acids)
 Explain DNA transcription and translation through constructing a protein sequence from a given
DNA sequence
 Interpret results and use this knowledge to hypothesize how defects in transcription and
translation can result in disease
Method: Teachers should flip the classroom, having students complete a homework assignment prior
to the classroom activity. Students will complete an activity that demonstrates how DNA transcription
and translation occurs within mammalian cells. Following the engaged learning activity, the instructor
will present a lecture that gives in depth information on transcription and translation to build on the
concepts students learned during the activity. By the end of the lesson, students should be able to
discuss DNA transcription and translation, construct a protein from a given DNA sequence, and apply
this knowledge to understanding how there may be disease states related in transcription and
translation misregulation.
Materials:
 Handout
 Informational sheet for activity
 (1) plastic Easter egg or (1) small Tupperware container to serve as the cell “nucleus”
 Construction paper cut into a long strip, labeled with a DNA sequence and folded to place inside
the “nucleus”
 Construction paper cut-outs with amino acid 1-letter abbreviations
 Ziploc bags (sandwich or snack size) to store amino acids (1 bag per group)
 Glue sticks or Scotch tape
 Optional: The Biology Coloring Book by Robert D. Griffin
 Optional: YouTube video (https://www.youtube.com/watch?v=6YqPLgNjR4Q) and appropriate
technology for watching the video
Duration: Approximately two 50 minute class periods
Group Size: This lesson plan is appropriate for all class sizes. For the activity, students should work in
groups of 2-4.
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DNA Transcription and Translation
Cathryn Kurkjian
Key Words:
Deoxyribonucleic acid (DNA) – Encodes your genetic information
Genome – An organisms complete set of DNA
Genes – Made of DNA, genes act as instructions for making proteins; the human genome contains
about 30,000 genes
Nucleotide bases (nucleobases) – Forms basic structural unit of DNA and RNA
Purines: Adenine and Guanine
Pyrimidines: Thymine, Cytosine, and Uracil (note: in RNA, Uracil replaces Thymine)
Nucleotide pairing – Also known as base pairing, is the joining of purine to a pyrimidine through a
hydrogen bond link (A—T, C—G, or A—U in RNA)
Ribonucleic acid (RNA) – Messenger to carry instructions from DNA for controlling protein synthesis
messenger RNA (mRNA) – Synthesized from DNA during transcription, mediates transfer of
genetic information from the nucleus to the cytoplasm
transfer RNA (tRNA) – RNA molecules that carry amino acids to ribosome to form polypeptides
ribosomal RNA (rRNA) – Assembles amino acids into polypeptides that make up proteins
Amino Acids – An organic compound composed of a carboxyl group and an amino group; the
“building blocks” of proteins
Polypeptides – Polymer consisting of a number of amino acids
Protein – Molecule made of one or more long chains of amino acids
Ribosome – A large complex of proteins that acts as the machinery involved in translation; complex
containing RNA and proteins
Sequence hypothesis – Initially proposed by Francis Crick in 1958, this hypothesis states that the
DNA sequence codes for the amino acid sequence
Transcription – The process of making an mRNA sequence from a gene sequence (DNA) template
Translation – The process of translating mRNA into a strand of amino acids (protein)
Background:
Deoxyribonucleic acid, or DNA, encodes for our entire genetic information. Nucleotide bases,
or nucleobases, are the building blocks of DNA. While there are only 4 distinct nucleobases used to
construct DNA, the human DNA is made up of a total of about 3 billion bases! The organization of these
bases is what determines how things are made in the human body. The sequence of DNA within an
individual is like a very large book, and every single person has a unique sequence that sets them apart.
Our genome, or our complete set of DNA, is located within the nucleus of all the cells within our
body. Important properties of DNA include its ability to replicate during cell division and its ability to
drive protein synthesis. However, DNA must perform these functions while never leaving the nucleus.
The nucleus is like a vault in a high security bank. While there are certain molecules that are able to
enter and exit, DNA must remain within the nucleus at all times under strict guard. DNA, therefore,
must utilize various mechanisms to complete its work from within the confines of the nucleus.
Proteins are the building blocks of all the tissues in our body; additionally, protein aids in tissue
repair and makes up the various chemicals within our bodies (i.e. hormones and enzymes). Genes are
regions of DNA that act as templates making proteins through a process known as protein synthesis.
DNA must therefore have a mechanism to get the genetic information copied and made into proteins.
These processes are what we refer to as transcription and translation. Transcription is the process in
which RNA copies the genetic sequence. This copied sequence, or mRNA, is able to leave the nucleus
where it can then direct protein synthesis. Translation is the process in which the mRNA sequence is
“decoded” into a sequence of amino acids. The ribosome, which is located within the cytoplasm, is the
machinery that can read the mRNA sequence and stitch amino acids together to generate a protein that
has a specific function.
3
DNA Transcription and Translation
Cathryn Kurkjian
Procedure:
Flip the classroom!
1. A homework assignment that describes the process of DNA transcription and translation
should be provided prior to this lesson plan. This will allow students to have a brief
understanding of the lesson prior to coming to class.
a. Example: The Biology Coloring Book by Robert D. Griffin
i. This book contains information and coloring exercises for various cell biology
topics, including DNA transcription and translation. In addition to giving a brief
introduction to the topic, it also requires that students color in the various
components of the processes as a mechanism for learning the new material.
Engage
2. Start the class off by asking students what they know about proteins based on their previous
knowledge of cells, DNA and the human body.
a. Think-Pair-Share: Ask students to take about 30 seconds to come up with ideas, and
then take another minute to discuss these ideas with their neighbor.
b. List and Record: Call on individuals to share their responses. Compile a list on the board
of these responses and engage students in a discussion.
i. What do they already know about proteins? What questions do they have?
3. Background information
a. If using an introductory homework assignment prior to class, discuss the highlights from
the assignment at this time.
i. What are some key differences between DNA and RNA
ii. What are nucleotides? How does nucleotide pairing work?
iii. How do you get from DNA  RNA  proteins?
Explore
4. Transcription and Translation Activity
a. Illustrate how transcription and translation work through an example.
i. A good example to introduce these concepts is the Rosetta Stone
 The Rosetta Stone is a very important part of Egyptian history.
 It is a large black granite stone bearing three inscriptions: (1) ancient
Egyptian hieroglyphs, (2) Egyptian demonic script and (3) Ancient Greek.
 It is considered the “key to modern understanding of Egyptian hieroglyphs”
since it contained the same passage in these three different languages.
 Issued at Memphis, Egypt in 196BC on behalf of King Ptolemy V. It is
believed to have been created following the coronation of King Ptolemy V,
and the decree established the divine cult of the king.
 It is believed to be housed at various locations, but is now located at the
British Museum (1802) where it is on display to the public.
 But what does this have to do with transcription and translation?!
1. We want to know what the script says. We cannot take the stone away
from the British museum because it is too big (over 1,000lb!) and
because it is against the law! So how do we go about trying to figure out
what is written on the stone?
2. First, we must go to the British Museum and “Transcribe”, or copy, the
text onto a piece of paper that we can carry with us.
4
DNA Transcription and Translation
b.
c.
d.
e.
f.
g.
Cathryn Kurkjian
3. However, we cannot read any of these ancient texts! So what do we do
next?
4. We must take the paper containing the transcribed text and bring it to
translators outside of the museum who are able to read the language
and translate it to English.
ii. The process of turning DNA into protein is very similar to this. DNA is found
within the nucleus of a cell. It must stay within the nucleus, so we must go
there to transcribe it. The transcribed material (mRNA) is then able to leave the
nucleus and be translated into amino acids which make up a protein. Let’s see if
we can understand the process through doing this activity.
iii. Knowing that information, you can go back and ask the questions:
1. What does the museum represent? Nucleus
2. What does the individual transcribing the text represent? Transcription
3. What does the translator represent? Translation; the Ribosome
Have students form groups of 2-4 students.
All students will receive a handout containing a chart showing how to transcribe DNA to
RNA and how to translate RNA to protein. This handout will also bare the question,
“Who’s hungry?”. The results from this activity will give the answer, “PACMAN AND
HIS WIFE”!
At the front of the room, the students can find the nucleus (a plastic Easter egg or a
small Tupperware container) that contains the genomic information (a DNA sequence
written on a piece of construction paper) that we want to use to make protein.
Students must go to the front of the room and, using their worksheet as a guide,
transcribe the DNA into RNA. Once it is transcribed, they can return to their seats to
translate the sequence.
The students will have various pieces of construction paper containing the one letter
abbreviations of various amino acids. They will use their handout to determine the
amino acid sequence that correlates with their RNA sequence. The amino acids can be
glued or taped to their handouts. They have now translated the RNA sequence into a
polypeptide.
If they have correctly gone through the steps of transcription and translation, then the
resulting string of 1 letter amino acids while bare the answer to the question.
Explain
5. Discuss the results from the activity as a class. Were students about to get the correct
answer? If not, determine where the mistakes occurred.
a. Was it a transcription error?
b. Was it a translation error?
6. Incorporate lecture that gives in depth explanation of how DNA transcription and translation
occurs. OR (optional) watch the YouTube video provided above to allow students to get an in
depth description of transcription and translation. This video gives detailed explanations of
the process beyond the concepts of DNA  RNA  Protein. After the video, students should
have an understanding of the following:
a. What are DNA and RNA, and how are they different?
b. What are nucleotides? What are the nucleotide pairs for DNA and RNA?
c. Where in the cell do transcription and translation occur?
d. What are the different types of RNA (mRNA, tRNA and rRNA) and what do they do?
e. What is an amino acid? How are amino acids processed into a protein (or polypeptide)?
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DNA Transcription and Translation
Cathryn Kurkjian
Elaborate
7. During the explanation following the activity, students should determine if errors occurred at
the level of transcription or translation. This can lead to a second class period that focuses
on diseases related to defects in transcription and translation.
a. The following scientific articles discuss transcription and translation and highlight the
various diseases known to be associated with misregulation of these processes.
 Lee, T.I. and R.A. Young. (2013) Transcriptional Regulation and Its Misregulation in
Disease. Cell 152, 1237-1251.
o Cancer (i.e. breast cancer, prostate cancer, lung cancer)
o Autoimmunity and Inflammation
o Diabetes mellitus
o Cardiovascular disease (congenital birth defects)
 Scheper, G.C., M.S. van der Knaap, and C.G. Proud. (2007) Translation matters:
protein synthesis defects in inherited disease. Nat Rev Gen 8, 711-723.
o Neurodegenerative disease (childhood ataxia with central hypomyelination,
CACH)
o Wolcott-Rallison syndrome (WRS)
o Bone-marrow failure syndrome (i.e. Shwachman-Diamond disease)
b. Various lesson plans can be found online demonstrating how point mutations during
DNA transcription and translation can result in genetic mutations and disease
 The Mating Games: Saving Wildlife with Forensic Genetics, the National Math
and Science Institute
 Genetic Mutation worksheet, Lesson Plans inc.
(http://www.lessonplansinc.com/lessonplans/gene_mutations_ws.pdf)
 Genetic Mutations for High School Biology Lesson Plans, Study.com
(http://study.com/academy/topic/genetic-mutations-for-high-school-biologylesson-plans.html#overview)
c. A potential follow-up assignment could involve students being assigned a disease and
doing a report. This report could be a written assignment or a poster that could be
presented to the class. Making a poster could be a great group assignment which could
allow the instructor to evaluate not only learned material but the ability of students to
work in a group environment.
Evaluate
8. The initial homework assignment should be graded for completeness. Because it was
provided prior to the lesson, it is up to the discretion of the instructor if the assignment
should be graded for correct answers.
9. Students should be evaluated for their participation throughout this lesson plan.
Participation includes class discussion and working in the groups during the transcription and
translation activity.
10. For completion of the activity, students must write down the mRNA sequence, construct the
amino acid sequence, and determine the answer to the question posed. This handout can be
evaluated for completion and correctness.
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DNA Transcription and Translation
Cathryn Kurkjian
Resources:
1. Wikipedia, Rosetta Stone (https://en.wikipedia.org/wiki/Rosetta_Stone)
2. YouTube (https://www.youtube.com/watch?v=6YqPLgNjR4Q)
3. The Biology Coloring Book by Robert D. Griffin (1st edition)
4. Lee, T.I. and R.A. Young. (2013) Transcriptional Regulation and Its Misregulation in Disease. Cell 152,
1237-1251
5. Scheper, G.C., M.S. van der Knaap, and C.G. Proud. (2007) Translation matters: protein synthesis
defects in inherited disease. Nat Rev Gen 8, 711-723.
6. The Mating Games: Saving Wildlife with Forensic Genetics, the National Math and Science Institute
7. Genetic Mutation worksheet, Lesson Plans inc.
(http://www.lessonplansinc.com/lessonplans/gene_mutations_ws.pdf)
8. Genetic Mutations for High School Biology Lesson Plans, Study.com
(http://study.com/academy/topic/genetic-mutations-for-high-school-biology-lessonplans.html#overview)
State and National Standards:
North Carolina Essential Standards:
Bio.3.1 Explain how traits are determined by the structure and function of DNA.
Bio.3.1.2 Explain how DNA and RNA code for proteins and determine traits
Bio.3.1.3 Explain how mutations in DNA that result from interactions with the environment
(i.e. radiation and chemicals) or new combinations in existing genes lead to changes in
function and phenotype.
Bio.4.1 Understand how biological molecules are essential to the survival of living organisms
Bio.4.1.2 Summarize the relationship among DNA, proteins, and amino acids in carrying out
the work of cells and how this is similar in all organisms
B.CX.1 Understand the global, historical, societal and cultural contexts of the visual arts
B.CX.1.3 Understand how art is used to document human experience.*
* Note: This standard is applicable only if using historical text, such as the Rosetta Stone
described herein, to introduce the concept of transcription and translation.
Common Core (Grades 9-10)
CCSS.ELA-LITERACY.RST.9-10.3 Follow precisely a complex multistep-procedure when carrying out
experiments, taking measurements, or performing technical tasks, attending to special cases or
exceptions defined in the text.
CCSS.ELA-LITERACY.RST.9-10.4 Determine the meaning of symbols, key terms and other domainspecific words and phrases as they are used in a specific scientific or technical context relevant to
grades 9-10 texts and topics.
CCSS.ELA-LITERACY.RST.9-10.9 Compare and contrast findings presented in a text to those from
other sources (including their own experiments), nothing when the findings support or contradict
previous explanations or accounts.
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DNA Transcription and Translation
Cathryn Kurkjian
Common Core (Grades 11-12)
CCSS.ELA-LITERACY.RST.11-12.3 Follow precisely a complex multistep procedure when carrying
out experiments, taking measurements, or performing technical tasks; analyze the specific results
based on explanations in the text.
CCSS.ELA-LITERACY.RST.11-12.4 Determine the meaning of symbols, key terms and other domainspecific words and phrases as they are used in a specific scientific or technical context relevant to
grades 11-12 texts and topics.
CCSS.ELA-LIERACY.RST.11-12.9 Synthesize information from a range of sources (e.g. texts,
experiments, simulations) into a coherent understanding of a process, phenomenon, or concept,
resolving conflicting information when possible.
Next Generation Science Standards
HS-LS1-1 Construct an explanation based on evidence for how the structure of DNA determines
the structure of proteins which carry out he essential functions of life through systems of
specialized cells
HS-LS3-1 Ask questions to clarify relationships about the role of DNA and chromosomes in coding
the instructions for characteristic traits passed from parents to offspring
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DNA Transcription and Translation
Cathryn Kurkjian
Print out Amino Acid Blocks on construction paper. Cut blocks out and place into ziplock bag. Each
group will get 1 bag containing amino acid blocks from 1 sheet (5 replicates of each AA, 105 blocks
total).
9
DNA Transcription and Translation
Cathryn Kurkjian
Print out DNA sequence onto Construction paper. Cut out and fold. Insert into a plastic Easter egg or a
small Tupperware container. The container will represent the nucleus that the DNA is stored within.
10
DNA Transcription and Translation
Cathryn Kurkjian
DNA Transcription and Translation Activity
Name _____________________
Date ______________________





DNA is made up of nucleotides
o Adenine (A) and Guanine (G) are purines
o Cytosine (C) and thymine (T) are pyrimidines
DNA must form base pairs (or nucleotide pairs)
o Purine-Pyrimidine base pairings (A—T and C—G) result in a proper duplex
structure
RNA is also made up of nucleotides
o Instead of thymine (T), RNA uses uracil (U)
o Therefore, A—U base pairs occur instead of A—T base pairs
During Transcription, an RNA sequence is made from DNA
o A DNA sequence is:
 3’ – ATG CGC ATG –5’
 5’ – TAC GCG TAC –3’
 You would use the top strand (starting with the 3’) to make your mRNA,
so your final result would be:
 5’ – UAC GCG UAC – 3’
Nucleotides in groups of 3 are translated into amino acids
o Using the chart provided, you would determine that the correct amino acid
sequence for the above RNA sequence is as follows:
 Tyr – Ala – Tyr
Amino Acid
Isoleucine
Leucine
Valine
Phenyalanine
Methionine
Cysteine
Alanine
Glycine
Proline
Threonine
Serine
Tyrosine
Tryptophan
Glutamine
Asparagine
Histidine
Glutamic acid
Aspartic acid
Lysine
Arginine
Stop codons
3 letter code
Ile
Leu
Val
Phe
Met (start)
Cys
Ala
Gly
Pro
Thr
Ser
Tyr
Trp
Gln
Asn
His
Glu
Asp
Lys
Arg
Stop
1 letter code
I
L
V
F
M
C
A
G
P
T
S
Y
W
Q
N
H
E
D
K
R
Stop
RNA codons
AUU, AUC, AUA
CUU, CUC, CUA, CUG, UUA, UUG
GUU, GUC, GUA, GUG
UUU, UUC
AUG
UGU, UGC
GCU, GCC, GCA, GCG
GGU, GGC, GGA, GGG
CCU, CCC, CCA, CCG
ACU, ACC, ACA, ACG
UCU, UCG, UCA, UCG, AGU, AGC
UAU, UAC
UGG
CAA, CAG
AAU, AAC
CAU, CAC
GAA, GAG
GAU, GAC
AAA, AAG
CGU, CGC, CGA, CGG, AGA, AGG
UAA, UAG, UGA
11
DNA Transcription and Translation
Cathryn Kurkjian
Using the information you have previously read and the information provided in this
handout, find the answer to the following question:
Who’s Hungry?!
1. Transcription: Transcribe the DNA found within the nucleus into mRNA.
2. Translation: Using the amino acids (1 letter abbreviation) provided, construct the polypeptide
(protein). Use scotch tape or a glue stick to adhere the sequence to this handout and determine
the answer to the question!
12