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1 March 5, 2010 Multiple choice questions (numbers in brackets indicate the number of correct answers) 1. Retroviruses Infect only eukaryotes Carry a genome made of DNA Do not integrate their DNA into the host genome Carry a reverse transcriptase inside their capsid Have a typical genome of 3000 nucleotides in size 2. Prokaryotic genomes Contain operons Are usually larger than 5x109 bp Do not harbor any transposons Are packaged into nucleoids Exist normally in two copies per cell Are always circular 5. Histones Are only found in eukaryotes Are only found in the nucleus Are not part of chromatin Are not found in telomeres Are not found in centromeres Are present in nucleosomes (2) 3. Microsatellites Are usually smaller than 150 bp Are genome wide repeats Are predominantly found at the end of chromosomes Are identical in all members of a family 4. Telomers Are minisatellites Are found in bacteria Are usually less than 1000 bp in size Contain no genes Are found in the middle of chromosomes (2) (1) (2) (3) 2 6. Pseudogenes Are nonfunctional genes Are expressed genes Are incomplete genes Are only found in eukaryotes Cannot be identified by computers (2) 7. LTR elements Occur in DNA Are found in bacteria Are also called "long interspersed nuclear elements (LINEs)" Contain a reverse transcriptase gene Contain a poly(A) tail (2) 8. Reporter genes Indicate the presence of stress conditions Are used to characterize proteomes Are all of bacterial origin Are used to delineate regulatory sequence elements Can often be detected by histochemical assays (2) 9. Chain termination DNA sequencing Requires dideoxynucleotides Requires deoxynucleotides Requires an RNA polymerase Requires double-stranded DNA Requires dimethylsulfate (2) 10. The following elements contain tandemly repeated DNA Minisatellites Long terminal repeats (LTRs) Microsatellites Pseudogenes Telomers Long interspersed nuclear elements (LINEs) Short interspersed nuclear elements (SINEs) DNA transposons Centromeres (4) 11. Phage display Is used to analyze transcriptomes Can identify protein-protein interactions Can identify protein-DNA interactions Requires a clone library (2) 3 12. Polypeptides Can fold into a double helix Can have a tertiary structure Can contain phosphate Can contain sulfur Consist of nucleotides Are synthesized in the nucleus (2) 13. Components of nucleic acids are Ribonuclease Phosphate Sucrose Nucleoids Adenine Thymine Glycerol Deoxyribose Uracil (5) 14. cDNA Is made from ribosomal RNA Is made from tRNA Is made from mRNA Contains only introns Contains only exons Is single-stranded (2) 15. ORF scanning Is used to find exons Is used to find intergenic sequences Is used to find gene homologies Is used to find genes 16. The human genome Is the largest genome known to date was the first completely sequenced genome Contains more than 40,000 genes Is divided into 24 chromosomes 17. Operons Occur only in bacterial genomes Contain more than one gene Contain more than one promoter Were discovered in the 19th century Contain long intergenic sequences (1) (1) (2) 4 18. Centromeres Contain satellite DNA Contain many tightly packed genes Are found in bacterial chromosomes Function in DNA replication Contain no histones Occur only in eukaryotes Are always located in the middle of chromosomes (2) 19. Most sequences in the human genome belong to Genes Pseudogenes Gene fragments Interspersed repeats Tandem repeats (1) 20. Expressed sequence tags (ESTs) Are random genomic sequences Are usually smaller than 50 bp Are cDNA sequences Can be used as genome markers Are attached to repeat sequences (2) 21. Tandemly repeated DNA Can be minisatellites Can be retroelements Can be transposons Can be used as DNA marker (2) Total: (44)