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NCBI Virus: Genomas completos NCBI Bacterias: Genomas completos NCBI Oganelas: Genomas completos Exploring the Human Genome ENSEMBL Que es ENSEMBL –EMBL – European Bioinformatics Institute (EBI) –Wellcome Trust Sanger Institute PAGINA PRINCIPAL Pre! and Archive! sites http://pre.ensembl.org http://www.ensembl.org http://archive.ensembl.org PAGINA PRINCIPAL UN BUEN EJEMPLO PAGINA PRINCIPAL Proyecto Genoma Humano CONTIG VIEWS FEATURES DAS CytoView Family View Ensembl – Open source BIOMART DATA MINING BioMart Query: • For all mouse genes on chromosome 10 that are protein coding, I would like to know the IDs in both Ensembl and MGI. • In the query: Attributes: what we want to know. Filters: what we know Query: • For all mouse genes on chromosome 10 that are protein coding, I would like to know the IDs in both Ensembl and MGI. • In the query: Attributes: what we want to know. Filters: what we know Query: • For all mouse genes on chromosome 10 that are protein coding, I would like to know the IDs in both Ensembl and MGI. • In the query: Attributes: what we want to know. Filters: what we know A Brief Example Change dataset to mouse Mus musculus A Brief Example Dataset has changed. Attributes (Output Options) Click Attributes. Click on ‘GENE’. Attributes allow us to choose what we wish to know. IDs are found in the ‘Features’ page. Attributes (Output Options) Ensembl Gene ID is selected Default options selected: Ensembl Gene ID and Transcript ID Attributes (Output Options) ‘Markersymbol ID’ will give us the MGI ID Scroll down to select MGI symbol. Also select the accession number. The Results Table ‘Results’ give us Gene IDs for all mouse genes in the Ensembl database. Select a Smaller Gene Set Expand the REGION panel Select ‘Filters’ Instead of all mouse genes, select protein coding genes on chromosome 10. Select Genes on Chromosome 10 Select chromosome 10 Instead of all mouse genes, select protein coding genes on chromosome 10. Select Protein Coding Genes Gene type: protein coding Filters are set to chromosome 10 and protein-coding genes. Genes must meet BOTH criteria to be in the result table. Results (Preview) For the full result table: Go This is a preview- if you are happy with the table, click ‘Go’. Full Result Table Ensembl Gene ID Transcript ID MGI symbol MGI Accession Number Original Query: • For all mouse genes on chromosome 10 that are protein coding, I would like to know the IDs in both Ensembl and MGI. • In the query: Attributes: columns in the Result Table Filters: what we know THE UCSC GENOME BIOINFORMATICS Otras herramientas para la búsqueda TIGR The Institute for Genomic Research www.tigr.org/tdb/