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Chapter 4 Section 1: What does DNA Look Like? DNA • DNA stands for: Deoxyribonucleic acid. • DNA stores and passes on genetic information from one generation to the next. Discovering DNA • In the 1950’s Rosalind Franklin & Maurice Wilkins took x-ray pictures of DNA, which suggested that it had a spiral shape. Discovering DNA • In 1953, James Watson and Francis Crick used the x-ray pictures to determine that the shape of DNA is a double helix. Examples: Double Helix Calling DNA a double helix is the same as saying it’s a twisted ladder. A staircase in the shape of a double helix, in the Vatican Museum Structure of DNA The sides of the “ladder” are made up of millions of alternating sugars & phosphates. • The sugar is named deoxyribose. • The sides of the ladder are held together by rungs (steps) attached to the sugars. Structure of DNA • The rungs (steps)of the DNA ladder are made up of two bases that contain nitrogen, called nitrogenous bases. • The 2 bases of each rung are held together by a hydrogen bond. • There are 4 bases to choose from: Adenine Thymine Guanine Cytosine Erwin Chargraff Erwin Chargraff discovered that: • • The amount of adenine (A) is always equal the amount of thymine (T) The amount of cytosine (C) is always equal the amount of guanine (G). He concluded that a rung can have: A and T or it can have C & G • This is called complementary base pairing. Complementary Base Pairing • States that only these bases pair together: • • • • A always pairs with T T always pairs with A G always pairs with C C always pairs with G. If you know one base pair of the DNA, you will be able to figure out the other! 1 Try it: Name the nitrogenous base that’s missing from each spot. 2 3 4 5 6 7 8 Nucleotide Nucleotide is a subunit (small piece) of DNA which contains: • 1 base • 1 sugar • 1 phosphate Lots of nucleotides connect to form a large DNA molecule. Length of DNA • Human genome: has 3 billion base pairs • Largest genome: South American marbled lungfish has 133 billion base pairs. • Smallest genome: Symbiotic insect bacteria, Carsonella ruddii has159,662 base pairs. South American marbled lungfish Symbiotic insect bacteria, Carsonella ruddii DNA Replication DNA Replication - process in which DNA makes an exact copy of itself. When does DNA replication occur? • During interphase before mitosis begins. DNA Replication is semi-conservative. Semi-conservative - each new DNA is made of ½ new and ½ old nucleotides. The old nucleotides were from the original strand (saved). DNA Replication Steps of DNA Replication 1. DNA unzips at the hydrogen bonds. 2. New complementary nucleotides move in to match both halves of the DNA ladder. 3. They form hydrogen bonds with the old nucleotides. 4. Two identical DNA molecules are formed! DNA Replication Why does DNA replication occur? • So when a cell splits, each cell has identical DNA in each cell. How is it possible that new DNA and original DNA are identical? • The bases are complementary so they always pair with the same exact base. Identical base sequences DNA Replication DNA replication animation Recap Questions 1.) What does DNA stand for? Deoxyribonucleic acid. 2.) In the 1950’s these two scientists took x-ray pictures of DNA, which suggested that it had a spiral shape. Rosalind Franklin & Maurice Wilkins 3.) In 1953, these two scientists used the xray pictures to determine that the shape of DNA is a double helix. James Watson & Francis Crick Recap Questions 4.) What are the sides of a DNA molecule made up of? Alternating sugars & phosphates 5.) What is the name for the sugar on a DNA molecule? Deoxyribose 6.) What are the steps attached to on a DNA molecule? Sugar Recap Questions 7.) The rungs (steps)of the DNA ladder are called what? Nitrogenous bases 8.) How many nitrogenous bases attach together on each step (rung) of a DNA molecule? Two 9.) What are the two bases of DNA held together by? Hydrogen Bond Recap Questions 10.) What bases always pair together? Adenine/Thymine & Guanine/Cytosine 11.) What scientists discovered that the amount (A) = the amount of (T) and the amount of (C) = the amount of (G). Erwin Chargraff 12.) Determine the complementary base pairs for the sequence: ATG CCT AGC TAC GGA TCG Recap Questions 13.) A subunit of DNA that contains 1 base, 1 sugar and 1 phosphate is called? A nucleotide 14.) What do lots of nucleotides together form? DNA molecule 15.) What is the process in which DNA makes an exact copy of itself? DNA replication 16.) When does DNA replication take place? Interphase (before mitosis) Recap Questions 17.) What is it called when each new DNA is made of ½ new and ½ old nucleotides(which were from the original strand)? Semi-Conservative 18.) Why does DNA replication occur? So when a cell splits, each cell has identical DNA in each cell. 19.) How is it possible that new DNA and original DNA are identical? The bases are complementary so they always pair with the same exact base. Recap Questions 20.) Put the steps of DNA replication in order: A.) New complementary nucleotides move in to match both halves of the DNA ladder. B.) Two identical DNA molecules are formed! C.) They form hydrogen bonds with the old nucleotides. D.) DNA unzips at the hydrogen bonds. D, A, C, B Chapter 4 Section 2: How DNA works DNA • DNA is like the blueprint for a house. • DNA contains instructions that determines the traits an organism inherits and needs to live. DNA is made up of smaller segments called genes. No, not those jeans No, not that GENE. DNA molecule How genes work •A gene consists of a string of nucleotides that give the cell instructions about how to make a specific trait. •Genes do not do the work themselves, they carry the code for making specific proteins. What are Proteins? •Found throughout cells •Control cellular functions •Determine physical traits such as: •Skin Color •Eye color •How tall you grow •What colors you can see •Whether your hair is curly or straight DNA, Genes, & Proteins • DNA has instructions how to make all traits for an organism. • Gene carries instructions for how to make one specific trait. • DNA and genes NEVER leave the nucleus so a copy of the gene is needed to make the protein. • Proteins are made from a copy of one specific gene. Proteins do all the work! Yet, DNA gets all the credit! How genes work •When a particular protein is needed, that part of the DNA (the gene) is copied. •The copy of the gene is called mRNA or messenger ribonucleic acid. How genes work • When a particular protein is needed it goes through a process called protein synthesis. • Two parts of protein synthesis: 1. Transcription – gene is copied in nucleus (because DNA never leaves the nucleus) 2. Translation – protein is made at the ribosome Transcription • Transcription is like taking the blueprints and copying a single section about one specific part of the house. Ex. Copying the blueprint only for the kitchen. 5 Steps of Transcription 1.) The cell gets a message that a protein is needed. 2.) DNA unzips at hydrogen bonds exposing only one gene. ONLY one gene being exposed “Help, a protein is needed!” Steps of Transcription 3.) Complementary nucleotides move into one side of the gene forming mRNA. • mRNA (messenger ribonucleic acid) – the copy of the gene. A U G G G C U U A A A G C A G 4.) mRNA leaves the nucleus to go into the cytoplasm. 5.) DNA rezips at the hydrogen bonds. Steps of Translation 1.) mRNA goes through the cytoplasm to meet the ribosome. mRNA ribosome A U G G G C U U A A A G C A G U G C A C G U U A 2.) mRNA goes through the ribosome in groups of 3 bases at a time called codons • Codons – 3 bases in a row on an mRNA molecule. ribosome A U G G G C U U A A A codon codon codon G C A G U G C A C G U U A codon codon codon codon codon Steps of Translation 3.) The arrangement of bases in a codon creates a specific amino acid. • Amino acid - The combination of the 3 letters on a codon. ( ex. AGG, CAG, AGC) • Example: AGG brings a different amino acid than CAG, and AGC, etc.) Amino acid that the codon codes for A U G G G C U U A A A codon codon codon G C A G U G C A C G U U A codon codon codon codon codon Steps of Translation Amino acid Amino acid A U G G G C U U A A A G C A G U G C A C G U U A 4.) Amino Acids get connected by a peptide bond. Peptide bond A U G G G C U U A A A G C A G U G C A C G U U A • Peptide Bond = bond that connects 2 amino acids Steps of Translation 5.) Many amino acids connected together makes a protein. protein Protein Differences between mRNA & DNA DNA mRNA •Longer •Thousands/millions of genes •Double stranded (helix) •Bases - ATGC •Stays in the nucleus •Produced in DNA Replication •Deoxyribose Sugar •shorter •1 gene •Single stranded (helix) •Bases – AGCU (U = Uracil) •Goes from nucleus to cytoplasm and ribosome •Produced in Transcription •Ribose Sugar Mutations Mutation- changes or mistakes that take place in the DNA or mRNA. • • Happens during DNA replication or transcription. Can occur randomly or caused by mutagens such as: – – – High energy radiation (from x-rays or sunlight) Asbestos Chemicals in cigarette smoke • If mutations occur in sex cells, they can be passed on to offspring. • Cells make proteins that can detect errors, so they are usually fixed. Mutations • Mutations can be good, neutral, or bad. There are 3 types of mutation: 1. Deletion - one pair of bases is removed. 2. Insertion- one pair of bases is added. 3. Substitution - one pair of bases is replaced with another pair Deletion • When one pair of bases is removed. Insertion • When one pair of bases is added. Substitution • When one pair of bases is replaced with another pair of bases. Examples using the following sequence “THE DOG BIT THE CAT” • Deletion: “THE DOB ITT HEC AT” • Substitution: “THE DOT BIT THE CAT” • Insertions: “THE DAO GBI TTH ECA T”