Download Chapter 13 Power Point Slides

Survey
yes no Was this document useful for you?
   Thank you for your participation!

* Your assessment is very important for improving the work of artificial intelligence, which forms the content of this project

Document related concepts

Nucleic acid analogue wikipedia, lookup

Deoxyribozyme wikipedia, lookup

Point mutation wikipedia, lookup

Artificial gene synthesis wikipedia, lookup

Replisome wikipedia, lookup

Cre-Lox recombination wikipedia, lookup

Gel electrophoresis of nucleic acids wikipedia, lookup

Microevolution wikipedia, lookup

Designer baby wikipedia, lookup

Gene wikipedia, lookup

Site-specific recombinase technology wikipedia, lookup

History of genetic engineering wikipedia, lookup

Genetic engineering wikipedia, lookup

Primary transcript wikipedia, lookup

Therapeutic gene modulation wikipedia, lookup

Helitron (biology) wikipedia, lookup

Non-coding DNA wikipedia, lookup

Vectors in gene therapy wikipedia, lookup

Epigenomics wikipedia, lookup

Cancer epigenetics wikipedia, lookup

Nucleosome wikipedia, lookup

DNA vaccination wikipedia, lookup

Genomics wikipedia, lookup

Epigenetics wikipedia, lookup

Extrachromosomal DNA wikipedia, lookup

Cell-free fetal DNA wikipedia, lookup

DNA supercoil wikipedia, lookup

Human genome wikipedia, lookup

No-SCAR (Scarless Cas9 Assisted Recombineering) Genome Editing wikipedia, lookup

Genome editing wikipedia, lookup

Metagenomics wikipedia, lookup

Genomic library wikipedia, lookup

Mutagen wikipedia, lookup

Comparative genomic hybridization wikipedia, lookup

United Kingdom National DNA Database wikipedia, lookup

DNA polymerase wikipedia, lookup

Microsatellite wikipedia, lookup

DNA profiling wikipedia, lookup

DNA repair wikipedia, lookup

DNA sequencing wikipedia, lookup

Zinc finger nuclease wikipedia, lookup

Genealogical DNA test wikipedia, lookup

Bisulfite sequencing wikipedia, lookup

Molecular cloning wikipedia, lookup

Nucleic acid double helix wikipedia, lookup

DNA damage theory of aging wikipedia, lookup

Mitochondrial DNA wikipedia, lookup

SNP genotyping wikipedia, lookup

DNA wikipedia, lookup

Plasmid wikipedia, lookup

Cloning wikipedia, lookup

Transcript
Michael Cummings
Chapter 13
An Introduction to Genetic
Technology
David Reisman • University of South Carolina
Historical look at genetic technology
 18,000 B.C.E. – breeding of deer, antelope, sheep
 4000 B.C.E. – use of bacteria to make alcohol,
bread, cheese, yogurt
Glofish®
biology-talk
rythmeering.com
13.1 What Are Clones?
 Clones
• Genetically identical molecules, cells, or organisms all
derived from a single ancestor
 Cloning
• The production of identical copies of molecules, cells,
or organisms
Cloning Higher Plants and Animals
 Development of methods for cloning higher plants
and animals represents a significant advance in
genetic technology
• Improving crops
• Improved breeds of domestic animals
Acceptance of GMOs differs among nations and
cultures.
Animal Cloning Methods
 Embryo splitting
• After in vitro fertilization, early embryonic cells are
divided and grown into clones
 Nuclear transfer (cell fusion)
• Enucleated eggs are fused with embryonic or adult
cells and grown into clones
• Dolly the sheep
 Nuclear injection
• A nucleus from a cell is injected into an egg
Egg cell
Nuclear
Fusion
A donor cell is taken
from a sheep’s udder.
Donor
cell
An egg cell is taken from
an adult female sheep.
The nucleus of the egg
cell is removed.
The two cells are
fused using an
electrical current.
The fused cell containing
the donor nucleus divides
to form an embryo.
Embryo
The embryo is
transferred to the
uterus of a foster
mother.
The embryo develops
into Dolly.
Cloned lamb
Fig. 13-1, p. 294
Dolly the Sheep
 Dolly was cloned by fusion of a nucleus from an
adult cell with an enucleated egg.
Fig. 13-2, p. 294
Nuclear
Injection
Cumulus
cells
Egg and its
surrounding cumulus
cells are removed
from the ovary.
Cumulus cells
separated
from egg
Nucleus
removed by
microsurgery
Nucleus
removed by
microsurgery
Cumulus cell nucleus
injected into egg
Egg implanted into
surrogate mother
Twenty-one days
later, a cloned
mouse is born.
(a)
Fig. 13-3a, p. 295
Fig. 13-3b, p. 295
13.2 Cloning Genes
Is a Multistep Process
 Recombinant DNA technology and the cloning of DNA
molecules has revolutionized laboratory research, heath
care, and the food we eat.
 Recombinant DNA technology: a series of techniques in
which DNA fragments are linked to self-replicating vectors to
create recombinant DNA molecules, which are replicated in
host cells.
DNA Cloning Requires Three Things
 A way to cut DNA at specific sites (restriction
enzymes)
 A carrier molecule (vector) to hold DNA for cloning
and for transfer to a host cell
 A host cell where the DNA can be copied
 After making a large number of identical DNA sequences, it can be
used for research, or in clinical and commercial applications.
Restriction Enzymes
 Bacterial enzymes that help protect bacteria from
viral infections
 Restriction enzymes - cut DNA at specific locations
– function like scissors
 Ex: EcoR1 recognizes and cuts GAATTC
CTTAAG
 Sequence is a palindrome
Recognition and
cleavage
Enzyme
sequence
Cleavage pattern
Source organism
Eco RI
Escherichia coli
Hin dIII
Haemophilus
influenzae
Bam HI
Bacillus
amyloliquefaciens
Sau 3A
Staphylococcus
aureus
Hae III
Haemophilus
aegypticus
Fig. 13-5, p. 296
Constructing a plasmid with a specific piece
or “target DNA”
ligase
Target DNA with
Vector DNA;
Gene of interest;
Ends cut with same
Ends cut with a
Restriction enzyme
Restriction enzyme
Recombinant plasmid
Bacterial cell
Like Fig. 13-7, p. 297
Colonies of Bacteria on Petri Plates
 Each colony is a clone, descended from a single cell
Fig. 13-8, p. 298
Steps in the Process of Cloning
1. Target DNA is cut with a restriction enzyme
2. Target DNA is mixed with vector molecules cut by the same
enzyme
-DNA ligase joins recombinant DNA molecules
3. Vector with target DNA (recombinant plasmid) is transferred
into bacterial cell
Recombinant plasmids replicate and produce many clones
of the target DNA molecule
4. Colonies carrying target DNA molecules are identified,
collected, and grown
-Host cells are broken open and recombinant plasmids are
extracted
Exploring Genetics
Asilomar: Scientists Get Involved
 An international conference was held at Asilomar,
California, to consider the possible dangers of
recombinant DNA technology
• In 1976, guidelines were set in place for experiments
using recombinant bacteria
• New guidelines were published in 1982
• No experiments are currently prohibited
13.3 Cloned Libraries
 A collection of cloned DNA sequences from one
source is a library
• Genomic library- all of the sequences from one
organism
• Chromosomal library- all of the sequences from a
single chromosome
• Expressed sequence library- all of the genes
expressed in a specific cell type
 Libraries are resources for gene studies
 We will not include topic 13.4 “Finding a specific
clone in a library” in this course.
13.5 A Revolution in Cloning:
The Polymerase Chain Reaction
 Polymerase chain reaction (PCR)
 PCR copies a DNA molecule without restriction
enzymes, vectors, or host cells
• Faster and easier than conventional cloning
Steps in a typical PCR cycle
PCR Mix- Target DNA, primers, polymerase, DNA bases
1. DNA is heated to break the hydrogen bonds
between the strands of a DNA molecule
2. Short nucleotide sequences (primers) and bind to
complementary regions on single-stranded DNA
3. Taq polymerase synthesizes complementary
strands of both templates, beginning at the primers
The Polymerase Chain Reaction (PCR)
1
PCR starts with a fragment of
double-stranded DNA.
2
The DNA is heated to 90°–
94°C to unwind it. The single
strands will become templates.
3
The reaction mixture contains
primers designed to base-pair with
complementary sequences at the
end of the DNA to be copied.
Fig. 13-11a, p. 301
4
5
The mixture is cooled.
Lowering the temperature
promotes base-pairing
between primers and the
DNA strands to be copied.
DNA polymerases recognize
the primers and assemble
complementary sequences
to make new strands. This
doubles the number of
identical DNA fragments.
Fig. 13-11b, p. 301
6
7
The mixture is heated
again. Raising the
temperature makes
all of the doublestranded DNA
fragments unwind.
The mixture is
cooled. Lower
temperature
promotes basepairing between
more primers added
to the mixture and
the single strands.
Fig. 13-11d, p. 301
8
DNA polymerase again doubles
the number of identical
fragments. Repeating the
sequence of reactions doubles
the number of DNA fragments
each time.
Fig. 13-11f, p. 301
PCR Doubles the Amount of
DNA With Each Cycle
Table 13-1, p. 302
Many Uses for PCR
 DNA to be amplified
by PCR does not
have to be purified
and can be present in
small amounts
• Used in clinical
diagnosis, forensics,
conservation
• Samples can be
small or old (insects
in amber)
Fig. 13-12, p. 302
Separation of Restriction Fragments
by Gel Electrophoresis
Fig. 13-13, p. 303
DNA Sequencing
is one form of genome analysis
 DNA sequencing
• A technique for determining the nucleotide sequence
of a fragment of DNA
• Basic method used in Human genome project and
other genome projects
 The Sanger method of DNA sequencing is the most
commonly used method and can be automated
Fig. 13-15, p. 305
Exploring Genetics: DNA Sequencing
 In 1977, Fred Sanger sequenced the 5,400
nucleotides in the genome of a virus
 Automated methods allowed the human genome
(3.2 billion nucleotides) to be sequenced
 DNA sequencing is one of the basic methods in
recombinant DNA technology
13.7 DNA Microarrays are used to Analyze
Gene Expression
 DNA microarrays are used
to analyze thousands of
genes in a single
experiment.
 A typical microarray is a
small glass panel containing
thousands of arrayed gene
sequences
 Detection is by hybridization
Fig. 13-17, p. 306
DNA Microarrays are used to for many
purposes
Table 13-2, p. 307
DNA Microarrays are used compare gene
expression patterns among different cells
Fig. 13-18b, p. 307