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GENETICS study of the mechanism of inheritance and variation of traits or characteristics as transmitted from one generation of plants or animals to another Contents Terms DNA Homo- & Heterozygous DNA Structure DNA Profile Genetic Screening DNA Replication Protein Synthesis RNA Vs DNA Dominant Recessive Genotype & Phenotype Phenotype & Environment Solving Genetic Questions Punnett Square Incomplete Dominance Sex determination Variations Sexual reproduction Gene mutation Chromosome mutation Genetic engineering 2 Species Is a group of animals or plants that can interbreed and produce viable, fertile offspring - members of a species share the same characteristics and differ only in minor details. 3 Heredity Is the study of the natural law or property of organisms whereby their offspring have various physical and mental traits of their parents or ancestors i.e. certain traits are transmitted from one generation to the next. Genetic information is carried on the DNA molecule as a gene. 4 Gene Is the unit of heredity found on a chromosome, and is an instruction (code) to the cell to make a particular substance, which helps regulate a trait of an organism. e.g. the gene for tongue-rolling in humans. There are two possible genes you can have. One gives you the ability to roll your tongue. The other does not give you this ability. These different forms of the same gene are 5 called alleles. Alleles Are alternative forms of a gene or a pair of genes found at the same locus / position on homologous chromosomes controlling the same trait. 6 Gene expression Possessing a gene does not mean it will be used. e.g. in humans the gene for growth hormone is expressed at different times in your life. Other factors come into play which will determine which genes the organism will use. When a gene is used it leads to gene expression which is - the process of changing the information in a gene into a protein and the effect that 7 protein has on the organism. DNA (Deoxyribonucleic Acid) substance found in the cell nucleii in strands with proteins attached called chromosomes Chromosome composed of many genes (100s). A set of chromosomes contains all the genes needed by an organism to live. Cells usually have two sets of chromosomes i.e. they are diploid (2n) and have two genes for every trait. These alleles interact to produce the traits in the organism. 8 Process for gene transmission In sexual reproduction the offspring get genetic information from each parent. Parents produce gametes (sperm and eggs) which contain one copy of each chromosome (=> one gene for each trait). Gametes are haploid (n). When fertilisation occurs the resultant cell (zygote) has two copies of each gene. This process prevents doubling the amount of DNA at each new generation. 9 Homozygous & Heterozygous The copies of the gene can be the same or different. homozygous: possessing a pair of similar genes for a trait e.g. TT or tt. heterozygous: possessing a pair of dissimilar genes for a trait e.g. Tt i.e. the dominant and recessive genes. 10 The life cycle of a human 11 DNA structure DNA is a long, coiled molecule called a double helix – like a twisted ladder. Composed of two strands of sugars and phosphates – the uprights of the ladder. Strands are linked by bases – form the rungs. Four different bases – Adenine (A), Guanine (G), Cytosine (C) and Thymine (T). Base pairing rule A always with T, and C always with G. Bases can be found in any order along DNA 12 strand – but … Exons the order of bases is unique for each DNA molecule. The order codes for the proteins made by the cell. Each message for a particular protein is called a gene. The parts of the DNA that code for proteins are called exons. 13 Interons Not all of the DNA carries messages. The majority of it does not code for proteins and just separates the genes. These non-coding pieces are called junk genes or interons and are highly variable. Found within or between two genes. These variable parts of DNA are used when taking a DNA profile (fingerprint). 14 DNA profile – procedure (1/3) Take a sample of material containing cells e.g. blood or semen. Extract the DNA from the cell by breaking up the cell membrane. The DNA is then treated with special enzymes. These recognise specific sequences of bases, usually in the junk genes, and cut the DNA at those sites. This produces fragments of DNA of various different lengths. 15 DNA profile – procedure (2/3) It is almost impossible for two members of a species to produce the exact same DNA fragments (unless they are identical twins). The fragments are placed at one end of a gel. An electric charge is passed through the gel and the fragments move down the gel. The smallest pieces move fastest. The DNA is then transferred onto a nylon membrane for ease of use. 16 DNA profile – procedure (3/3) Radioactive DNA probes are put onto the membrane. These attach to the fragments. The membrane is then put in contact with Xray film and the distance travelled by the fragments can be seen. The result is a series of bands similar to bar codes. 17 DNA profile – use Can be used for a number of purposes: Identify criminals – from blood, semen or other tissue left at the scene of a crime. Identify fathers in paternity cases – the old method of using blood types only proved that a man was not the father. 18 The production of a DNA profile 19 Genetic screening (1/3) This is the use of DNA profiling to identify harmful genes possessed by an individual. A couple’s DNA can be searched to see if they are carriers of a particular gene e.g. cystic fibrosis. If a couple know they are carriers, and there is a high probability of having a child with a genetic disorder, then they can decide whether or not to have a family. 20 Genetic screening (2/3) There are no cures for genetic disorders. Treatments are available to reduce their effects e.g. with haemochromatosis a person accumulates a dangerous level of iron in the body. The damage due to this can be prevented by removing blood on a regular basis from the sufferer. 21 Genetic screening (3/3) Ethical problems should people be tested for genetic disorders? Should they be told the results if there is nothing the medical profession can do for them? Consequences for insurance business Could you be refused to be insured if you have a genetic disorder? Would people refuse to employ you? 22 Would you be refused a house loan? DNA Replication (1/3) DNA is vital for a cell to survive. When a cell divides it is essential that an exact copy of the DNA is passed on to the new cells. This ensures that the new cell can produce the same substances and perform the same functions as the original cell. DNA has the ability to make an exact copy of itself. 23 DNA Replication (2/3) Enzymes control the process of DNA replication. They pull apart or unzip the two strands of DNA. They then match the exposed bases with their partners using the base pairing rule i.e. A with T and C with G. The matchhing bases are taken from the pool of free bases, with attached sugar and 24 phosphate, surrounding the DNA. DNA Replication (3/3) This process results in two identical strands of DNA produced from the original strand. One side of each new DNA molecule comes from the original and one is new. The order of the bases on the new molecules is identical to the original. As a result the genes on each chromosome are the same. 25 The process of DNA replication 26 Functions of DNA Replication is one function of DNA . Converting its coded message into proteins is another. The proteins then control the activities of the cell. Proteins are made from amino acids. There are about 20 different amino acids that make up most proteins. The number and order of amino acids determines the type of protein that is made. 27 Protein synthesis – DNA codes DNA has a code that determines the order of amino acids in a protein. The code is made up of groups of three bases. Each group codes for a specific amino acid which will be placed in that specific position. There are more codes than amino acids => some amino acids have more than one code e.g. GCA and GGG code for the same amino acid. 28 Protein synthesis – how it works 1. 2. 3. 4. The piece of DNA which codes for a protein is rewritten – transcribed into a new molecule called messenger RNA (mRNA) – see slide 31. The RNA leaves the nucleus and travels to the ribosome. Here the message is translated and amino acids are assembled in the correct sequence in a long chain to make the protein. The chain will fold into the threedimensional shape of the protein – which 29 will then carry out its function – slide 32. RNA Vs DNA RNA Contains U (uracil) Contains ribose Single strand Nucleus & cytoplasm DNA Contains T Contains deoxyribose Double strand Nucleus only RNA is complimentary to DNA, e.g. if the order of bases in the DNA is GGCCAATT then in the RNA it is CCGGUUAA. 30 The production of mRNA from DNA Back to slide 29 31 The production of a protein from DNA Back to slide 29 32 Dominant (1/2) A human has two genes for each trait (slide 11) – one from each parent. They may be the same or different (slide 12). e.g. tongue-rolling in humans There are two types of allele (gene) – one allows you roll tour tongue (R), the other does not (r). If you are homozygous for the trait (RR or rr) then you can (RR) or cannot (rr) roll your tongue. There is no in between. 33 Dominant (2/2) If you are heterozygous for the trait (Rr) i.e. you have one of each type of allele then only one of the two traits is expressed – the same trait is always expressed In this case you can roll your tongue. The allele for tongue rolling is dominant. Dominant alleles are the ones that are expressed in the heterozygous condition. 34 Recessive This refers to alleles that can only be expressed when they are in the homozygous condition e.g. rr = tongue non-roller; r is recessive. 35 Genotype and Phenotype genotype: genetic makeup of an individual or the genes that they inherit e.g. RR, Rr or rr – three types. phenotype: physical appearance of an individual as a result of the interaction of the genotype with the environment e.g. can or cannot roll the tongue – two types. Genotype and phenotype are not always the same. 36 The possible genotypes and phenotypes for the tongue rolling allele GENOTYPE PHENOTYPE RR Ability to roll tongue Rr rr Inability to roll tongue 37 Phenotype and environment Having the alleles is no guarantee of their expression e.g. you may inherit a genotype that will make you two meters tall, but if you do not get enough food then you cannot grow to this size. The genotype will not be expressed. The genotype (nature) and the environment (nurture) are both important. 38 Solving genetic questions Question: If a man homozygous for tongue rolling (RR) reproduces with a woman homozygous for non-tongue rolling (rr), what type of tongue rolling ability will their children have? To answer this we must examine: 1. the possible gametes that can be produced. 2. the possible combinations of these gametes at fertilisation, e.g. 39 Homozygous roller x non-roller 40 Non-diagramatic representation Parents Male roller homozygous Female nonroller Parental genotype RR rr gametes All R All r F1 genotype All Rr F1 phenotype All rollers 41 A cross between two heterogygous parents 42 Heterozygous rollers Parents Male roller homozygous Female roller homozygous Parental genotype Rr Rr gametes R r R r F1 genotype RR Rr Rr rr Roller Non43 roller F1 phenotype Roller Roller Punnett square When the possible gametes of the parents are known they are placed along the side of a grid. Then the possible combinations at fertilisation are worked out and placed in the remaining squares. Using the previous example: Parents Rr x Rr Gametes R, r x R, r 44 Now using the Punnett square Use of Punnett square Male Female Possible gametes R r R RR Rr r Rr rr F1 genotypes RR F1 phenotypes Rr Possible genotypes of offspring Rr rr Roller Roller Roller Non-roller Next: A problem to solve 45 Parents Yellow Yellow Parental genotype Yy Yy gametes Y y Y y F1 genotype YY Yy Yy yy F1 phenotype Yellow White Go back to Slide 49 Back Back again And again Last time 46 Phenotypic ratio F1 genotype YY Yy Yy Yy F1 phenotype Yellow Yellow Yellow White Expected Phenotypic ratio 3 1 Actual results 294 89 Actual ratio 3.3 1 47 Go to Slide 49 A problem to solve (1/2) In a species of plant, yellow flower colour is dominant to/over white. Two yellow flowers were crossed and their seeds produced 294 yellow flowers and 89 white flowers. Explain. Answer: Yellow – dominant = Y Go to Slide 46 White – recessive = y Remember each parent must have two alleles. Both parents are yellow ⁂ both contain Y 48 A problem to solve (2/2) What is the other allele – Y or y? Look at the offspring some are white ⁂ must have a genotype yy and (Slide 46) must have gotten a y allele from each parent (Slide 46) ⁂ both parents have genotype Yy (Slide 46). Finish the cross (Slide 46) and examine the phenotypic ratio. (Go to Slide 48) What about the number of offspring? Can you accept this as a 3:1 ratio? 49 Solution Template Parental Phenotype Parental Genotype Gametes F1 Genotype F1 Phenotype Depending on Question asked: Ratio / F2 50 Incomplete dominance or Co-dominance In snapdragons this is seen when neither allele for colour is dominant, and both are expressed in the heterozygous condition. 51 Incomplete dominance In short-horn cattle the heterozygous roan colour results from a lack af dominance between red and white coat colours. e.g. if a red bull mates with a white cow, what results will be produced? Allele for White = CW Allele for Red = CR Genotype of cow = CW CW 52 Genotype of bull = CR CR Red bull X White cow 53 White cow X Roan bull – do yourself 54 Sex determination Humans have 23 pairs of chromosomes i.e. 22 pairs of autosomes and a pair of sex chromosomes. Sex chromosomes contain the genes that determine the sex of an individual. Male and female sex chromosomes are different. Females have two the same size called X chromosomes. Males have one X chromosome and a much 55 smaller Y chromosome. Types of gametes produced All females gametes (eggs) contain an X chromosome. Male gametes (sperm) will be of two types. Half the sperm will contain an X chromosome and half will contain a Y chromosome. 56 How sex is determined Everyone receives an X chromosome from their mother. The other chromosome (X or Y) is received from the father’s sperm. The father determines the sex of the child. XX = female XY = male There is a 50:50 chance that the child will be 57 male (or female). Sex determination in humans 58 Exceptions Bird, butterfly & moth Females – XY Males – XX 59 Variation No two members of a species are identical. Variations are due to environmental and genetic causes. Genetic variations are the important ones for evolution. Can you explain why? 60 Causes of genetic variation 1. Sexual reproduction 2. 3. 4. Gene mutation Chromosome mutation Genetic engineering 61 1. Sexual reproduction Offspring get one set of chromosomes from each parent. ⁂ they can have a different combination of genes than either parent and will be different from both of them. Meiosis allows genes to be reshuffled e.g. in a cell where 2n = 6, homologous chromosomes are not identical but do carry genes for the same trait (red & white flower). A gamete contains a copy of each chromosome.62 The possible ways three pairs of chromosomes can be combined Gametes get one from each parent. Possible combinations are: r A R a d D R A D r A D R a D r a D R a d r A d R A d r a d 63 There are eight ways of combining three pairs of homologous chromosomes i.e. 23 = 8. Humans have 23 pairs of chromosomes so the possible number of gametes from one parent is 223 = 8,388,608 (8.4 million) The other parent is capable of producing a similar number of gametes also. The total possible number of offspring is ⁂ 70,368,744,177,664 (= 7 x 1013) all slightly different from each other i.e. all 64 variations Back to causes of genetic variation 2. Gene mutation A mutation is a spontaneous change in the sequence of nitrogenous bases in a gene or chromosome. Genes contain the codes that are responsible for making proteins (e.g. enzymes). If this code is altered then different protein may be produced which may not work in the same manner as the normal protein and may have serious consequences. Mutations may give rise to variations. 65 They are permanent changes in the genes or chromosomes. If they occur in gamete producing cells the changes can be passed on to the next generation. If they occur in somatic cells (non-gamete producing cells i.e. body cells) they cannot be passed on. Mutations are rare, occur randomly and are usually harmful. Sickle-cell anaemia and cystic fibrosis result 66 from gene mutations. Cystic fibrosis (1/4) This is one of the commonest genetic disorder diseases in children. It is caused by a disorder in a gene on chromosome seven, and is a recessive condition, so both parents may be carriers without having the disease. The correct gene codes for a protein found in the cell membrane that controls the flow of chloride ions into and out of the cell. 67 Cystic fibrosis (2/4) The mutated protein does not allow the correct flow of chloride ions. This results in a disturbance of the mucussecreting glands of the lung, pancreas, mouth, skin and gastrointestinal tract. Symptoms include failure to gain weight, with frequent chest infections and loose, pale stools. Sodium chloride concentration is increased in sweat. 68 Cystic fibrosis (3/4) It is possible that in the future cystic fibrosis screening may become a routine antenatal investigation. At the moment, genetic counselling is offered to those whose children might be affected. Treatment consists of taking pancreatic enzymes, as well as preventing and treating respiratory infections. 69 Cystic fibrosis (4/4) Heart and lung transplants, as well as genetic manipulation, may provide the answer for future sufferers. It is possible that in the future cystic fibrosis screening may become a routine antenatal investigation. At the moment, genetic counselling is offered to those whose children might be affected. 70 The inheritance of a genetic disorder e.g. cystic fibrosis The mutation is recessive i.e. you need to inherit it from both parents. A person who possesses one gene but has no symptoms for the disorder is called a carrier. If both parents are carriers there is a one in four chance that any child they may have will get the disorder. 71 The inheritance of a genetic disorder Back to causes of genetic variation 72 3. Chromosome mutation Arise as a result of a change in an individual chromosome or a change in the number of chromosomes present e.g. Down’s syndrome. These children have almond-shaped eyes and a round face, are usually mentally disabled and often have congenital heart defects. The effected children have an extra copy of chromosome number 21. 73 The chromosome mutation leading to Down’s syndrome 74 How it happens The gamete producing cells divided by meiosis, but the chromosomes (No.21) failed to separate (segregate). As a result two of the gametes had no copy of chromosome no. 21, and two gametes had two copies of it. When this second type of gamete is fertilised by a normal gamete the result is Down’s syndrome. The incidence of Down’s syndrome increases with increasing age of the parents. 75 Causes of mutations Agents such as X-rays, gamma radiation, and chemicals such as cigarette smoke, formaldehyde and mercury cause mutations. Most mutagenic agents are carcinogens and vice versa. 76 Examples Chernobyl – children born with birth defects – parent’s gonads irradiated by nuclear material in the environment. Incidence of childhood thyroid cancer has increased by 1000 times. Animals also affected – produce young with birth defects. Japan - children born with birth defects parents eating shellfish contaminated with mercury. 77 Back to causes of genetic variation 4. Genetic engineering modern techniques or processes used to artificially alter the genetic information in the chromosome of an organism. Plant breeders and farmers have used selective breeding for generations to produce new varieties of plants and variations in animals. Now it is possible to take genes from one species and insert them into another species. Look at how human growth hormone / insulin is 78 produced by bacteria. How is it done? The gene for growth hormone is identified and isolated on a human chromosome. A copy of this gene is cut (restriction) from human cells. Gene is then inserted into a bacterial plasmid (small circular piece of DNA in bacteria) – transformation (ligation) – introduction of base sequence changes. Plasmid is then inserted into a bacterial cell. The transformed (transgenic) bacteria make many copies of the plasmid. These bacterial cells then express the human gene and make the human growth hormone. 79 The production of transgenic bacteria that produce human growth hormone 80 Examples of genetic engineering Tomato plants – gene for producing the enzyme needed to soften the fruit on ripening has been altered and no longer functions – fruit remains hard – easier to harvest – used to make tomato ketchup. Sheep – have been given the human gene for factor VIII – needed for blood clotting – haemophiliacs are missing this gene – it is hoped that the factor VIII will be able to be 81 extracted from the sheep’s milk END 82