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Biology Bio 93 Final Exam Review Review FALL 2015 Gene Express. Genetic Basis & of Recombinant Development DNA Tech. Alterations of Chromosomes Mixed Plate Dogma of Biology Nervous System 100 100 100 100 100 100 200 200 200 200 200 200 300 300 300 300 300 300 400 400 400 400 400 400 500 500 500 500 500 500 Alterations of Chromosomes for 100 True/False: Only a male fruit fly can have white eyes. Answer Alterations of Chromosomes 100 Answer: FALSE Alterations of Chromosomes for 200 The following image shows the genotypes in a recombination experiment. The parents are on the left and the offspring are labeled #1-4. Which offspring are the recombinants? Parents Offspring Answer Alterations of Chromosomes 200 Answer Offspring 2 & 3 Alterations of Chromosomes for 300 What recombination frequency would you observe if you have the following F2 offspring: 1600 1600 350 250 Answer Alterations of Chromosomes 300 Answer Recombination Frequency = Recombinants Total Offspring X 100 = 350 + 250 3800 X 100 15.8 Alterations of Chromosomes for 400 You are mapping genes on chromosome 8 of the komodo dragon. You are studying three genes that appear to be linked. One gene is forked tongue (FT). One gene is for long claws (LC). One gene is for rough skin (RS). The recombination frequency between RS and FT is 11%. The recombination frequency between FT and LC is 13%. The recombination frequency between RS and LC is 21.5%. What is the likely order of these genes with respect to one another on chromosome 12? A. RS-FT-LC B. RS-LC-FT C. FT-RS-LC Answer D. These genes could not be linked Alterations of Chromosomes 400 Answer A. RS-FT-LC 11% RS 13% FT 21.5% LC Alterations of Chromosomes for 500 Color blindness in humans is an X-linked recessive trait. If a heterozygous female (XNXn) has children with a color normal male (XNY), then what is the probability of the children being colorblind? A. All children will be colorblind B. None of the children will be color blind C. Only the sons will be color blind D. Only the daughters will be colorblind E. Half of the sons will be colorblind Answer Alterations of Chromosomes 500 Answer E. Half of the sons will be color blind XN Y XN XNXN XNY Xn XnXN XnY What is the genotypic and phenotypic ratio? Colorblind Mixed Plate for 100 Cristian is a Bio 93 TA working on regeneration of limbs in a salamander known as the axolotl. When a salamander loses a leg, cells near the injury release a protein called FGF (fibroblast growth factor) that binds to only nearby cells and triggers the regeneration of the leg. FGF is: A. An example of a hormone signal B. An integral protein C. Synthesized on free ribosomes D. An example of a paracrine signal E. An example of intercellular communication Answer Mixed Plate 100 Answer D. An example of a paracrine signal Mixed Plate for 200 What level of structure is affected in a protein when SH-SH bonds are disrupted by heat? A. Primary B. Secondary C. Tertiary D. All levels Also, what functional group is this? Is it polar/nonpolar? Soluble in water? Answer Mixed Plate 200 Answer C. Tertiary Mixed Plate for 300 Projecting neurons in the human brain have long axons that can measure several centimeters. Scientists have observed rapid vesicular movement called axonal transport along these axons in both directions: towards the tip of the axon and towards the cell body of the neuron. It is likely that this movement is caused by: A. Motor proteins which use IF as tracks to move vesicles in both directions B. Myosin which uses MF as tracks to move vesicles towards the plus end of MF in both directions C. Kinesin which uses MT tracks to move vesicles towards the plus end and dynein which uses MT to move towards the minus end of MT Answer Mixed Plate 300 Answer C. Kinesin which use MT tracks to move vesicles towards the plus end and dynein which uses MT tracks to move vesicles towards the minus end of MT Mixed Plate for 400 In a recent research study, scientists discovered a way to create synthetic nanotube made of polypeptides. The nanotube can function as a solar panel and use sunlight to energize electrons and also add them to NADP+ to make NADPH. What is the biological equivalent to this reaction? A. Calvin cycle B. Citric acid cycle C. Light reactions D. Oxidative phosphorylation E. Chemiosmosis Answer Mixed Plate 400 Answer C. Light Reactions Mixed Plate for 500 You are an evil mastermind and wish to create a virus that will infect cells and transform them from normal cells into tumor (cancerous) cells. What method would you use? A. Create a virus that expresses a proto-oncogene B. Create a virus that expresses a G1 checkpoint protein C. Create a virus that expresses an oncogene D. Create a virus that expresses a tumor suppressor gene E. Create a virus that expresses a G2 checkpoint protein Answer Mixed Plate 500 Answer C. Create a virus that expresses an oncogene Dogma of Biology for 100 What did the Hershey and Chase experiment demonstrate? A. DNA carries genetic information B. Phage consist of DNA and protein C. Proteins are higher in sulphur D. DNA is high in sulfer E. Phage infect E. coli Answer Dogma of Biology 100 Answer A. DNA carries genetic information Dogma of Biology for 200 Cytosine makes up 32% of the nucleotides in a sample of DNA from an organism. Approximately what percentage of the nucleotides in this sample will be thymine? A. 18% B. 36% C. 31% D. 64% E. It cannot be determined from the information provided Answer Dogma of Biology 200 Answer A. 18% Cytosine = 32% Guanine = 32% 64% 100% - 64% = 36% Thymine and Adenine 36% / 2 = 18% Dogma of Biology for 300 A mutant bacterial cell has a defective aminoacyl synthase that attaches a lysine to tRNAs with the anticodon AAA instead of the normal phenylalanine. The consequence of this for the cell will be that: A. None of the proteins in the cell will contain phenylalanine B. Proteins in the cell will include lysine stead of phenylalanine at amino acid positions specified by the codon UUU C. The cell will compensate for the defect by attaching phenylalanine to tRNAs with lysine-specifying anticodons. D. The ribosome will skip a codon every time a UUU is encountered. Answer Dogma of Biology 300 Answer B. Proteins in a cell will include lysine instead of phenylalanine at amino acid positions specified by the codon UUU Dogma of Biology for 400 The anticodon tRNA complex carrying the amino acid Tryptophan is 3’-ACC-5’. The original template strand of DNA was: A. 3’-UGG-5’ B. 5’-TGG-3’ C. 3’-ACC-5’ D. 5’-ACC-3’ E. 5-GGT-3’ Answer Dogma of Biology 400 Answer C. 3’-ACC-5’ Anticodon tRNA: 3’-ACC-5’ mRNA: 5’-UGG-3’ DNA: 3’-ACC-5’ Dogma of Biology for 500 A point mutation in DNA could affect a protein’s activity because A. It might result in a chromosomal translocation B. It might exchange one stop codon for another stop codon C. It might exchange one serine codon for a different serine codon D. It might substitute an amino acid necessary for function E. It might substitute the N-terminus of the polypeptide for the C-terminus Answer Dogma of Biology 500 Answer D. It might substitute an amino acid necessary for function Wild type DNA template strand 3′ T A C T T C A A A C C G A T T 5′ 5′ A T G A A G T T T G G C T A A 3′ mRNA 5′ Protein Amino end A U G A A G U U U G G C Met Lys Phe Gly U A A 3′ Stop Carboxyl end Nucleotide-pair substitution: missense T instead of C 3′ T A C T T C A A A T C G A T T 5′ 5′ A T G A A G T T T A G C T A A 3′ A instead of G 5′ A U G A A G U U U A G C U A A 3′ Met Lys Phe Ser Stop Gene Expression & Recombinant DNA Technology for 100 The segment of DNA shown has restriction sites I and II, which create restriction fragments A, B, and C. Which of the gels produced by electrophoresis shown below best represents the separation and identity of these fragments? A. B. C. D. Answer Gene Expression & Recombinant DNA Technology 100 Answer C. Gene Expression & Recombinant DNA Technology for 200 Which of the following tools of recombinant DNA technology is incorrectly paired with its use? A. DNA ligase <-> cutting DNA, creating sticky ends of restriction fragments B. DNA polymerase <-> Polymerase chain reaction to amplify sections of DNA C. RNA polymerase <-> Production of RNA from DNA D. Electrophoresis <-> Separation of DNA fragments Answer Gene Expression & Recombinant DNA Technology 200 Answer A. DNA ligase <-> cutting DNA, creating sticky ends of restriction fragments Gene Expression & Recombinant DNA Technology for 300 Which of the following modifications is least likely to alter the rate at which a DNA fragment moves through a gel during electrophoresis? A. Altering the nucleotide sequence of the DNA fragment B. Digesting the DNA fragment with a restriction enzyme C. Increasing the length of the DNA fragment D. Decreasing the length of the DNA fragment E. Neutralizing the negative charges within the DNA fragment Answer Gene Expression & Recombinant DNA Technology 300 Answer A. Altering the nucleotide sequence of the DNA fragment Gene Expression & Recombinant DNA Technology for 400 In eukaryotes, the general transcription factors A. Are required for the expression of specific protoencoding genes B. Bind to other proteins or to a sequence element within the promoter called the TATA box C. Inhibit RNA polymerase binding to the promoter and begin transcribing D. Usually lead to a high level of transcription even without additional specific transcription factors E. Bind to sequences just after the start of trascrption Answer Gene Expression & Recombinant DNA Technology 400 Answer B. Bind to other proteins or to a sequence element within the promoter called the TATA box Gene Expression & Recombinant DNA Technology for 500 Bio93 TA Lauren studies a transcription factor called Ovo2 that is required for normal mouse mammary gland development. Ovol2 is a single gene locus, yet there are 3 distinct Ovol2 variants expressed at the protein level. Which of the following best explains this phenomenon? A. Alternative splicing of Ovol2 mRNA B. Alterations of the Ovol2 transcript by microRNAs C. Frameshift mutations in the Ovol2 gene sequence D. The Ovol2 protein is recognized and degraded by the proteosome E. Exons are not spliced out of the Ovol 2 transcript Answer Gene Expression & Recombinant DNA Technology 500 Answer A. Alternative splicing of Ovol2 mRNA Genetic Basis of Development for 100 The product of the bicoid gene in Drosophila provides essential information about A. Lethal genes B. Segmentation C. The dorsal-ventral axis D. The left-right axis E. The anterior-posterior axis Answer Genetic Basis of Development 100 Answer E. The anterior-posterior axis Head Tail T1 T2 T3 A1 A2 A3 A4 A5 A6 Wild-type larva A7 A8 250 m Tail Tail A8 A8 A7 A6 A7 Mutant larva (bicoid) Genetic Basis of Development for 200 Scientists develop a drug that they find is able to block gastrulation. What effect would you expect to happen? A. Cleavage would not occur in the zygote B. Embryonic germ layers would not form C. Fertilization would be blocked D. The blastula would not be formed E. The blastopore would form above the grey crescent in the animal pole Answer Genetic Basis of Development 200 Answer B. The embryonic germ layers would not form 3 Key Future ectoderm Future mesoderm Future endoderm Late gastrula Blastopore Blastocoel remnant Ectoderm Mesoderm Endoderm Blastopore Yolk plug Archenteron Genetic Basis of Development for 300 If a female Drosophila is homozygous for a mutation in a maternal effect gene: A. She will not develop past the early embryonic stage B. All of her offspring will show the mutant phenotype, regardless of their genotype C. Only her male offspring will show the mutant phenotype D. Her offspring will show the mutant phenotype only if they are also homozygous for the mutation E. Only her female offspring will show the mutant phenotype Answer Genetic Basis of Development 300 Answer B. All of her offspring will show the mutant phenotype, regardless of their genotype Genetic Basis of Development for 400 Taking certain drugs while pregnant can permanently damage the human embryo. If a child develops malformations in the cells that line the digestive tract as a result of drug exposure as an embryo, which embryonic tissue as likely damaged? A. Ectoderm B. Endoderm C. Mesoderm D. Yoke plug E. Blastocoel Answer Genetic Basis of Development for 400 Answer B. Endoderm Genetic Basis of Development for 500 If you experimentally control Bicoid protein levels so it is expressed evenly at moderate levels throughout a developing Drosophila embryo, what would you expect to see in the resultant larva? A. The head and tail ends will have switched B. Normal development, with no mutant traits C. Too many thoracic (chest) segments D. Both ends will have a tail, with no head E. An animal with two tails Answer Genetic Basis of Development 500 Answer C. Too many thoracic (chest) segments Nervous System for 100 Neurotransmitters are released from axon terminals via: A. The secretory pathway B. Active transport C. Teleportation D. Transcytosis E. Exocytosis Answer Nervous System for 100 Answer E. Exocytosis Nervous System for 200 After the depolarization phase of an action potential, the resting potential is restored by: A. The opening of sodium activation gates B. The opening of voltage-gated potassium channels and the closing of sodium channels C. A decrease in the membrane’s permeability to potassium and chloride ions D. A brief inhibition of the sodium-potassium pump E. The opening of more voltage-gated sodium channels Answer Nervous System for 200 Answer B. The opening of voltage-gated potassium channels and the closing of sodium channels. Nervous System for 300 Action potentials move along axons: A. More slowly in axons of large than small diameter B. By the direct action of acetylcholine on the axonal membrane C. By activating the Na/K pump at each point along the axonal membrane D. More rapidly in myelinated than non-myelinated axons E. By reversing the concentration gradients for Na/K ions Answer Nervous System for 300 Answer D. More rapidly in myelinated than nonmyelinated axons Nervous System for 400 For a neuron with an initial membrane potential at -70 mV, an increase in the movement of K+ ions out of the neuron’s cytoplasm would result in: A. Depolarization of the neuron B. Hyperpolarization of the neuron C. The replacement of potassium ions with sodium ions D. The replacement of potassium ions with calcium ions E. The neuron switching on its Na/K pump to restore the initial conditions Answer Nervous System for 400 Answer B. Hyperpolarization of the neuron Nervous System for 500 Action potentials (APs) are normally carried in only one direction: from the axon hillock toward the axon terminals. If you experimentally depolarize the middle of the axon threshold, using an electronic probe, then: A. No AP will be initiated B. An AP will be initiated and proceed only in the normal direction toward the axon terminal C. An AP will be initiated and proceed only back toward the axon hillock D. Two APs will be initiated, one going toward the axon terminal and one going back toward the hillock. Answer Nervous System for 500 Answer D. Two APs will be initiated, one going toward the axon terminal and one going back toward the hillock Axon Plasma membrane Action potential Na+ K+ Cytosol Action potential Na+ K+ K+ Action potential Na+ K+