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WELCOME BACK! • Chapter 14 Biotechnology: • New Terms Today: – Genome – Genetic engineering, transgenic organisms, GM food, – Reproductive and therapeutic cloning – Stem cells, plouripotent, totipotent – Gene therapy 14.1 Genomics • field that compares the entire DNA content of different organisms – the genome: the full complement of genetic information of an organism (i.e., all of its genes and other DNA) – DNA sequencing: a process that allows scientists to read each nucleotide in a strand of DNA Table 14.1 Some Eukaryotic Genomes What’s going on in DNA sequencing? • Identifying a chain of nucleotides so the order of their nitrogenous bases is documented. • DNA fingerprinting 14.2 The Human Genome • The publication of the sequence of the entire human genome occurred on June 26, 2000 – the human genome contains more than 3 billion base pairs – it is estimated that there are between 20K and 30K protein-encoding genes • 14.3 A Scientific Revolution Genetic engineering: moving genes from one organism to another – 1st: chop up the source DNA and obtain a copy of the gene you want to transfer – restriction enzymes bind to specific short sequences on the DNA and make a specific cut • the sequence is symmetrical • the cut generates DNA fragments that are “sticky” 14.3 A Scientific Revolution • DNA from another source that is cut with the same restriction enzyme will have the same sticky ends – these ends can be joined together by the enzyme ligase • Restriction enzymes are the basic tools of genetic engineering Figure 14.4 How restriction enzymes produce DNA fragments with sticky ends 14.3 A Scientific Revolution • The source of DNA to be transferred – DNA library: collection of DNA fragments representing all of the DNA from an organism • How do you get the DNA into the host cell? – You need a vehicle to carry the source DNA into the host cell A gene transfer experiment occurs – Cleaving DNA: the source & vector in 4cut stages DNA q Producing recombinant DNA: place DNA fragments into vectors and then transferring the DNA into the target cells q Cloning: introduce DNA-bearing vectors into target cells. Then allow target cells to reproduce q Screening: select the particular infected cells that have received the gene of interest Fig 14.5 How a genetic engineerin g experimen t works 14.4 Genetic Engineering and Medicine • potential to improve medicine, to aid in curing and preventing illness • Advances have been made in the following areas – the production of proteins used to treat illness – the creation of new vaccines to combat infection – the replacement of defective genes (i.e., gene therapy) 14.4 Genetic Engineering and Medicine • Many genetic defects occur because our cells fail to make critical proteins – Ie: diabetes • Insulin (protein) transports glucose from blood across cell membranes. • insulin blood glucose level. • A diabetic can receive a donation of protein made by another body • genes encoding insulin have been introduced in bacteria, which can cheaply produce lg quantities of protein Table 14.3 Genetical ly Engineer ed Drugs Subunit Vaccines • a vaccine produced from specific protein subunits of a virus and thus having less risk of adverse reactions than whole virus vaccines. • Used to treat herpes and hepatitis – engineers splice genes from the coat of the virus into a fragment of cowpox (vaccinia) virus genome – the smallpox virus is the vector – carry the viral coat genes into cultured mammalian cells – where the immune system can develop an immunity to the virus prior to being exposed to a fully active virus – piggyback vaccines: Inserting a gene encoding a pathogenic microbe's surface protein into a harmless virus produces Figure 14.7 Constructing a subunit, or piggyback, vaccine for the herpes simplex virus 14.5 Genetic Engineering and Agriculture • Genetic engineering of crop plants has successfully – made plants more resistant to disease – improved nutritional content (?) and yield – made crops hardier and better able to resist environmental stresses Engineering crops to be resistant to insect pests • reduces the need to add insecticides to the environment – There is a soil bacteria: Bacillus thuringiensis (Bt), – It contains a gene that produces a protein that is toxic when eaten by crop pests – This gene has been inserted into the chromosomes of tomatoes • because the plants can synthesis Bt protein, they are toxic to pests, such as the tomato hornworm Herbicide resistance has also been genetically engineered – Glyphosphate: powerful herbicide that kills most actively growing plants and is used to control weeds – using a gene gun, engineers inserted an isolated gene from a bacterium that is resistant to glyphosphate into crop plants • the glyphosphate can now be widely applied to fields and orchards where it retards weed growth but not crop growth Gold particles coated w/ DNA fired into plant cells where it is incorporate d into cells DNA Figure 14.9 Genetically engineered herbicide resistance How do you feel about this? • The real promise of genetically modified (GM) plants is to produce crops with desirable traits that directly benefit the consumer – Ie: to combat iron and vitamin A micronutrient deficiencies among the world’s rice eaters, genetic engineers created GM “golden” rice • this transgenic rice contains genes from a bean, a fungus, wild rice, and a daffodil to increase its nutritional value Figure 14.10 Transgenic “golden” rice 14.5 Genetic Engineering and Agriculture • Much controversy and protest • Bioengineers modify crops in two major ways – makes the crop easier to grow – ? improves the food itself • Is eating GM food dangerous? – does adding genes introduce novel proteins that maybe potentially harmful when consumed? – could introduced proteins become allergens? Those concerned about the widespread use of GM crops raise 3 concerns – Poss of unintentional harm to other organisms • Are weeds important source of food and shelter for non-pest insects? – potential for new resistance • pests might become resistant to engineered proteins. • farmers required to plant some non-GM crop alongside GM crop to slow the selection pressure for resistance – gene flow: modified genes may spread to non-GM species due to interbreeding 14.6 Reproductive Cloning • Theory of irreversible determination: – animal cells become irreversibly committed after the first cell divisions of the developing embryo – nuclear transplants: transplanting a nucleus from an animal cell into the an enucleated egg and seeing if it develops • only cells extracted from early embryos (no further than the 16-cell stage) will develop into an adult • we now know that this theory is WRONG 14.6 Reproductive Cloning • Keith Campbell, a geneticist, proposed that, in order for a successful nuclear transplant to take place, both the egg and the donated nucleus need to be in the same stage of the cell cycle – Starve the cells so that they pause at the G1 checkpoint – the nuclear transfers succeed in producing cloned farm animals 14.6 Reproductive Cloning • Reproductive biologist Ian Wilmut worked with Campbell to clone a sheep using the mammary cells of an adult Figure 14.12 Wilmut’s animal cloning experiment. 14.6 Reproductive Cloning Figure 14.12 Wilmut’s animal cloning experiment. critters 14.6 Reproductive Cloning • Despite the success of “Dolly the Sheep,” only a small fraction of transplanted embryos survive to term – most embryos will die late in pregnancy – many exhibit large offspring syndrome or lateral developmental problems as they become adults – almost none survive to a normal lifespan 14.7 Embryonic Stem Cells • Embryonic stem cells: form early in development and each has the capacity to develop into a healthy individual • Totipotent is the ability of cells, such as stem cells, to have the ability to form any body tissue, and even an adult animal 14.7 Embryonic Stem Cells • As development proceeds, some of the embryonic stem cells begin to become committed to forming a certain type of tissue only – every major tissue is formed from its own tissuespecific adult stem cell • possibility of restoring damaged tissues Figure 14.16 Using embryonic stem cells to restored damaged tissue 14.8 Therapeutic Cloning • also called somatic cell nuclear transfer address the issue of immune acceptance of a transplanted cell used for therapy – therapeutic cloning: cloned embryo is destroyed to harvest embryonic stem cells, which will be automatically tolerated by the recipient of the therapy – Reproductive cloning, the cloned embryo is allowed to develop into adults – many ethical issues Figure 14.18 How human embryos might be used for therapeutic cloning 14.9 Gene Therapy • Gene transfer therapy involves introducing “healthy” genes into cells that lack them – early work with a cold virus vector, called an adenovirus, was unsuccessful in humans because of immune attack – a new vector, adeno-associated virus (AAV) does not elicit a strong immune response and seems promising Figure 14.19 Using gene therapy to cure a retinal degenerative disease in dogs Next Lecture: Evolution/ Ch. 15 • Extra Credit Lottery – Name & explain 4 scientific evidences of Evolution – What is a fossil? How does an organism become a fossil? Do most organisms fossilize? – What does the term Hardy Weinberg balance mean? What are the 5 assumptions necessary for a population to be in Hardy Weinberg balance?