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Chapter 11 DNA What is DNA? • Living things need proteins to survive. – most proteins are enzymes • DNA provides the complete set of instructions for making all the proteins for an organism. The structure of DNA • DNA is very large - It is a nucleic acid that is made up of subunits called nucleotides. • Nucleotides are made up of three parts: – A carbohydrate called deoxyribose – A phosphate group – A nitrogen base (4 possible types) The structure of DNA • There are 4 possible types of nitrogen bases in a nucleotide. • The nitrogen bases are: – – – – Adenine (A) Guanine (G) Cytosine (C) Thymine (T) • Nucleotides are named from the nitrogen base they have. The structure of DNA • DNA is composed of many nucleotides joined together. – the sequence (order) of the nucleotides is the code for making proteins • The phosphate group of one nucleotide bonds to the deoxyribose sugar of an adjacent nucleotide. – This forms the skeleton of the DNA molecule called the sugar-phosphate backbone. • The 4 nitrogen bases stick out from the backbone like teeth in a zipper. The Double Helix • Watson and Crick discovered that DNA was made up of two long chains of twisted nucleotides called the double helix. • Think of the double helix like a twisted zipper. • The bases will only bond to its complementary base: – Adenine bonds to Thymine – Guanine bonds to Cytosine – Because of the complementary base pairing, adenine and thymine always exist in equal amounts; and guanine and cytosine always exist in equal amount. – There are not always equal amounts of A-T to G-C however. DNA Replication • Replication: The process by which a DNA molecule makes an exact copy of itself. • Replication occurs during Interphase – S of the cell cycle. • Replication begins by the DNA molecule unzipping. – This is done by an enzyme which cuts the bonds between bases (A-T, G-C). • As the DNA unzips, another enzyme bonds free-floating nucleotides to each of the exposed nucleotides in the single strands. • Another enzyme bonds the sugar phosphate backbone until each parent strand has a new complementary daughter strand. • Because the new DNA molecules have one old strand (parent), and one new strand (daughter), we say that replication is a semi-conservative process. DNA is instructions for making proteins • The sequence (or order) of nucleotides determines what type of protein will be made. • A gene is a segment of DNA that holds the instructions for making a single protein. • One chromosome can have thousands of genes in it. Making proteins from genes • DNA doesn’t make proteins It gets help from a molecule called RNA. • RNA differs from DNA in three ways: – It is usually single stranded rather than double stranded. – It has a ribose sugar rather than a deoxyribose sugar. – It contains the base uracil in place of thymine. Making proteins from genes • There are 3 types of RNA that help to build proteins. – messenger RNA (mRNA) – is a copy of the gene that is needed to make a protein. – ribosomal RNA (rRNA or ribosome) – reads the mRNA and assembles the protein. – transfer RNA (tRNA) – brings the amino acids to the ribosome for protein assembly. Making proteins from genes • A cell doesn’t always need every protein to be made all the time (that would be too much work). • So the cell tells the DNA which gene it needs copies of, in order to make the protein that it needs at a particular time. • In other words, the gene is “switched on” or activated when the cell needs that protein. Transcription • Transcription – the process in which enzymes make an mRNA copy of a gene. • The mRNA is then moved into the cytoplasm for translation (the next step). Translation • Translation – is the process of reading the mRNA and assembling the protein. • tRNA brings the amino acids to the ribosome for assembly into a protein. • How does the tRNA know which amino acid to bring to the ribosome? • Each 3 bases in the mRNA (called a codon), codes for a single amino acid. • A tRNA molecule has three bases on it that are complementary to the codon, called an anticodon. • Each tRNA carries only the amino acid that it’s anticodon specifies. • The process continues until a codon that means “stop” is reached by the ribosome. Then the ribosome releases the amino acid chain. • Once the amino acid chain is released, it folds into a distinct shape and is a protein. Translation Mutations • Mutations are changes in a DNA sequence. As a result, the protein that is coded for is also changed. • Sometimes DNA mutations are harmless and have no effect on the cell. More often, however, mutations can have negative and even life-threatening results. Mutations • Mutations can occur in body cells and gametes. • If the mutation occurs in the gametes, the mutation is passed on to the offspring. • When a mutation occurs in a body cell, the mutation is not inherited by the offspring, but the mutation is passed to the daughter cells when the mutated cell divides during mitosis. Cancer • Some mutations in body cells affect the genes that control mitosis. When this happens, the cell divides uncontrollably and rapidly; this is cancer. • The following pictures are of breast cancer and are graphic in nature. Types of Mutations • A point mutation is a change in a single base pair (A-T, G-C). • A point mutation causes an incorrect amino acid to be inserted into the growing amino acid chain during translation; this results in a protein that does not function properly. Types of Mutations • A frameshift mutation is the insertion or deletion of a single base (A, T, G, C). • A frameshift mutation causes each codon to be out of place by one letter; as a result every amino acid from the insertion / deletion is incorrect. Frameshift mutation Chromosomal Mutations • Much larger mutations can occur at the chromosome level. • Entire pieces of chromosomes can be broken off and lost during mitosis and meiosis. Often times, the broken pieces then rejoin the chromosome incorrectly. • Changes to the structure of the chromosome are called chromosomal mutations. Chromosomal Mutations • Chromosomal mutations occur in all organisms, but are most common in plants. • Few chromosomal mutations are passed to offspring, because the zygote with the chromosomal mutations usually dies. • In cases where the zygote lives, the mature organism with a chromosomal mutation is often sterile. Causes of Mutations • Some mutations are spontaneous; they just happen by chance during DNA replication. • However, many mutations are caused by environmental factors, including: • Radiation (gamma rays, UV rays, Xrays) • Chemicals (formaldehyde, dioxins, benzene, cyanide, asbestos) • Any agent that can cause a mutation is called a mutagen. Repairing DNA • There are enzymes that proofread DNA and replace incorrect nucleotide sequences with the correct sequences. • The repair enzymes work well, but are not perfect. The greater the damage, the harder it is to repair. TEST – NEXT CLASS! • Structure of DNA (double helix; nucleotide parts; 4 nitrogen bases and how they bond; Watson, Crick, Wilkins, and Franklin; sugar-phosphate backbone) • DNA replication (how and when it happens) • Activation, Transcription, Translation (gene, differences between RNA and DNA, mRNA, rRNA, tRNA, codon, anticodon, amino acid, protein) • Mutations (mutagen, point mutation, frameshift mutation, chromosomal mutations, DNA repair)