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AP Biology Study Guide for Ch. 18, 19, 20 Feb 2014 These three chapters will bring your knowledge of Biology into the 21st century. What is cloning? How can genes from one organism be transferred into another? How can this knowledge be used to fight disease, increase food production, fight crime, and ultimately improve the quality of life of all humans? You should be able to answer these questions by the end of the next few weeks. I. SCHEDULE 2014 for Chapters 18, 19, 20 Monday (2/17) Tues *Go over Study Guide *No School— Ch. 18-20 Presidents’ Day! *Start Ch. 18 Weds *Lecture Ch. 18 *DNA Scissors: An Introduction to Restriction Enzymes Weds * DNA Turtle Fingerprinting Lab *Forensic Molecular Biology Activity Weds *Start Investigations 1Artificial Selection and 10-Energy Dynamics Fri *Lecture Ch. 18 Monday (2/24) *Pre-lab Investigation 9- Biotechnology: Restriction Enzyme (Read Lab) Monday (3/3) *Lecture Ch. 19 Tues *Dry Lab-Investigation 9-Biotechnology: Restriction Enzyme Analysis of DNA Tues *Lecture Ch. 19 Fri *In-Class FRQ Monday (3/10) *Pre-lab Investigation 8-Biotechnology: Bacterial Transformation Tues *Investigation 8Biotechnology: Bacterial Transformation Weds *Finish Investigation 8Biotechnology: Bacterial Transformation Fri *Lecture Ch. 20 Monday (3/17) *Lecture Ch. 20 Tues *Lecture Ch. 20 Wed *Finish up Ch. 18, 19, 20 *In-Class FRQ Fri *Test Ch. 18, 19, 20 *Packet Due *Flashcards Due Fri *Work on labs *Practice: Mapping Plasmids ELT Review Thursday II. KEEP IN MIND 1. The schedule above is TENTATIVE!! We have 4 major labs to work on and several smaller paper/pencil labs to do, too. Since 3 of these labs require living organisms, we have to be flexible— living things don’t always cooperate perfectly and follow our human schedule! Pay attention is class for changes to due dates. 2. These are the last three chapters that I will be covering with you in class. For the rest of the Chapters, you will do F & T Guides, Learning Targets, Key Vocabulary, Labs, and FRQs, and you will be expected to read and study the chapters on your own. You can do this because these chapters are conceptually easier than the first 20 chapters in the book. In class, we will do the labs and FRQs that go with various chapters and review for the AP exam. III. KEY VOCABULARY promoter mutagenic agent conjugation viroids temperate viruses provirus recombinant DNA gene cloning inducible enzyme regulator gene operator promoter positive control chromatin nonhistone proteins chromosomal puffs contact inhibition transposition plasmid lytic cycle retrovirus lysogenic cycle transduction restriction endonucleases interferon structural genes repressor protein operon negative control cAMP-CAP complex histone protiens DNA hybridization gene amplification IV. LEARNING TARGETS Chapter 18: 18.1. Describe the structure of viruses. 18.2. Using diagrams, describe the lytic and lysogenic modes of viral replication. 18.3. Compare and contrast the mode of reproduction of a typical DNA virus (Fig. 18.5) with that of a typical RNA virus (Fig. 18.8) with that of a typical RNA retrovirus (Fig. 18.10). 18.4. What are viroids and what do they do? 18.5. What are prions and what do they do? 18.6. What is bacterial transformation and how does it happen? 18.7. Using a diagram, describe the process of transduction by viruses and mention some implications and uses of this process. 18.8. Explain what plasmids are and describe how they can be transferred from one bacterial cell to another. 18.9. Explain what transposons are and how they affect an organism’s genome. Use an example showing how the actual organism is affected. 18.10. Describe the Jacob-Monod model for control of gene expression. Explain the roles of the inducer, the operator, the promoter, the repressor protein, the regulator gene, and the structural genes. Using a diagram, show how expression of the lac operon of E. coli is regulated. 18.11. Describe the functioning of a repressible operon and explain how it differs from an inducible operon. Provide examples of each. 18.12. Describe how the cAMP-CAP complex facilitates transcription and how it is related to the lac operon. Chapter 19: 19.1. Point out the relationship between histone proteins and the nonhistone proteins with respect to DNA. 19.2. Describe euchromatin and heterochromatin. 19.3. Explain why the models for the control of gene transcription in bacteria are not directly applicable to eukaryotic cells in a multicellular organism. 19.4. Gene expression is tightly regulated in eukaryotic cells. Give at least two examples of each of the following levels of regulation: A. Regulation of chromatin structure B. Regulation of transcription initiation C. Mechanisms of post-transcriptional regulation Chapter 20: 20.1. Using a diagram, describe the steps involved in inserting genes from one kind of organism into cells of another kind of organism. Include the following in your description: restriction endonucleases, "sticky ends,” plasmid, ligase, and transformation. 20.2. Describe the process of gene cloning. Indicate the advantages that this process has over that of artificial transformation. Then, explain how gene cloning can be used to sequence genes from eukaryotic cells. 20.3. Describe the process of electrophoresis. Be sure to explain how this process is utilized to create a genetic fingerprint. 20.4. Explain the processes involved in PCR. Provide a brief overview of how this process was discovered and developed.