Download CHNOPS Lab

Survey
yes no Was this document useful for you?
   Thank you for your participation!

* Your assessment is very important for improving the workof artificial intelligence, which forms the content of this project

Document related concepts

Gene regulatory network wikipedia , lookup

DNA repair protein XRCC4 wikipedia , lookup

Metabolism wikipedia , lookup

Nucleosome wikipedia , lookup

Bisulfite sequencing wikipedia , lookup

Metalloprotein wikipedia , lookup

Endogenous retrovirus wikipedia , lookup

Transformation (genetics) wikipedia , lookup

Molecular cloning wikipedia , lookup

Proteolysis wikipedia , lookup

Real-time polymerase chain reaction wikipedia , lookup

RNA-Seq wikipedia , lookup

DNA supercoil wikipedia , lookup

Transcriptional regulation wikipedia , lookup

Promoter (genetics) wikipedia , lookup

Two-hybrid screening wikipedia , lookup

Catalytic triad wikipedia , lookup

Non-coding DNA wikipedia , lookup

Protein structure prediction wikipedia , lookup

Vectors in gene therapy wikipedia , lookup

Community fingerprinting wikipedia , lookup

Messenger RNA wikipedia , lookup

Silencer (genetics) wikipedia , lookup

Gene wikipedia , lookup

Gene expression wikipedia , lookup

Epitranscriptome wikipedia , lookup

Deoxyribozyme wikipedia , lookup

Biochemistry wikipedia , lookup

Nucleic acid analogue wikipedia , lookup

Genetic code wikipedia , lookup

Point mutation wikipedia , lookup

Artificial gene synthesis wikipedia , lookup

Amino acid synthesis wikipedia , lookup

Biosynthesis wikipedia , lookup

Transcript
CHNOPS Lab
Constructing a Model of Protein Synthesis
Name ______________________________________ Date _______________
PRE-LAB DISCUSSION
Genes are the units that determine inherited characteristics, such as hair color and blood type. Genes
are lengths of DNA molecules that determine the structure of polypeptides (the building blocks of proteins)
that our cells make. The sequence of nucleotides in DNA determines the sequence of amino acids in
polypeptides, and thus the structure of proteins.
In a process called transcription, which takes place in the nucleus of the cell, messenger RNA
(mRNA) reads and copies the DNA’s nucleotide sequences in the form of a complementary RNA molecule.
Then the mRNA carries this information in the form of a code to the ribosomes, where protein synthesis takes
place. The code, in DNA or mRNA, specifies the order in which the amino acids are joined together to form a
polypeptide.
As the code carried by mRNA is “read” on a ribosome, the amino acids are added to the growing
polypeptide chain (protein) . The process by which the information from DNA is transferred into the language
of proteins is known as translation.
In this investigation, you will simulate the mechanism of protein synthesis and thereby determine the
traits inherited by fictitious organisms called CHNOPS. CHNOPS, whose cells contain only one
chromosome, are members of the kingdom Animalia. A CHNOPS chromosome is made up of eight genes (A,
B, C, D, E, F, G and H), each of which is responsible for a certain trait.
PROCEDURE
1. To determine the trait for Gene A of your CHNOPS, first you must transcribe the DNA into mRNA.
2. Use the chart in Figure 1 to find the corresponding amino acid sequence. Remember to use the mRNA
sequence in this chart!
3. Using figure 2, find the trait that matches the amino acid sequence. To save space, you may abbreviate
each amino acid. Record this information in the appropriate place.
4. Repeat steps 1 through 4 for the remaining genes (B through F).
5. Create two additional traits for your CHNOPS and give their initial DNA sequence, mRNA codon, and
the amino acid sequence. Start with a trait listed in Figure 2 and work backwards to fill in the
information for Genes G and H.
6. Using all the inherited traits, sketch your CHNOPS in the space provided.
1
Figure 1
First
Base
U
C
A
G
U
Second Base
C
A
G
Phenylalanine
Serine
Tyrosine
Cysteine
Phenylalanine
Leucine
Leucine
Leucine
Leucine
Leucine
Serine
Serine
Serine
Proline
Proline
Proline
Tyrosine
Stop
Stop
Histidine
Histidine
Glutamine
Cysteine
Stop
Tryptophan
Arginine
Arginine
Arginine
Leucine
Isoleucine
Isoleucine
Isoleucine
Methionine (start)
Valine
Proline
Threonine
Threonine
Threonine
Threonine
Alanine
Glutamine
Asparagine
Asparagine
Lysine
Lysine
Aspartate
Arginine
Serine
Serine
Arginine
Arginine
Glycine
Valine
Valine
Valine
Alanine
Alanine
Alanine
Aspartate
Glutamate
Glutamate
Glycine
Glycine
Glycine
Third
Base
U
C
A
G
U
C
A
G
U
C
A
G
U
C
A
G
Figure 2
Amino Acid Sequence
Tyrosine – Alanine – Tyrosine
Lysine – Leucine
Proline – Alanine – Alanine
Histidine – Arginine
Tryptophan – Proline – Isoleucine
Threonine – Serine – Serine
Tyrosine – Glutamate - Aspartate
Lysine – Arginine – Serine – Leucine
Valine – Isoleucine
Serine – Alanine
Proline – Serine – Phenylalanine - Glycine
Proline – Serine – Glycine
Methionine – Tryptophan – Stop
Cysteine – Methionine – Alanine
Methionine – Phenylalanine – Valine
Valine – Glycine – Cysteine
Asparagine – Threonine – Methionine
Cysteine – Aspartate - Stop
Trait
Hairless
Hairy
Plump
Skinny
Four-legged
Two-legged
Long nose
Short nose
No freckles
Freckles
Blue skin
Orange skin
Short legs
Long legs
Long tail
Short tail
Spots
Stripes
2
Gene A
DNA
ACC
GGT
Gene B
TAT
DNA
AGC
CGA
Gene C
DNA
TTT AAC
mRNA
mRNA
mRNA
Amino Acid
Sequence
Amino Acid
Sequence
Amino Acid
Sequence
Trait
Trait
Trait
Gene D
DNA
GGA
CGC
Gene E
CGA
DNA
GGG AGG AAA CCC
Gene F
DNA
ATG
mRNA
mRNA
mRNA
Amino Acid
Sequence
Amino Acid
Sequence
Amino Acid
Sequence
Trait
CTC
CTA
Trait
Trait
Gene G
Gene H
DNA
DNA
mRNA
mRNA
Amino Acid
Sequence
Amino Acid
Sequence
Trait
Trait
3
DRAW YOUR CHNOPS ANIMAL HERE (or take a screen shot/camera shot and PASTE the picture
below):
ANALYZE AND CONCLUDE
1. Explain the differences between translation and transcription. _________________________________
__________________________________________________________________________________
__________________________________________________________________________________
__________________________________________________________________________________
__________________________________________________________________________________
2. What is the specific site for transcription in the cell? _____________________________
3. What is the specific site for translation in the cell? _______________________________
4. Suppose you knew the makeup of the specific AMINO ACIDS of a protein, how could you determine
the particular DNA code that coded for them? (Think about it, you did this in this lab.)
__________________________________________________________________________________
__________________________________________________________________________________
__________________________________________________________________________________
__________________________________________________________________________________
__________________________________________________________________________________
4
5. How could one change in a DNA nucleotide alter the formation of the translated protein? For
example, if we changed or removed the nucleotide in bold from the following DNA strand, how would
that affect the formation of the protein? Explain (step by step).
DNA :
TACTCAATTCACGCT
__________________________________________________________________________________
__________________________________________________________________________________
__________________________________________________________________________________
__________________________________________________________________________________
__________________________________________________________________________________
5