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2013 2014 19 YE AR S DO I NG EDITION SCIENCE Genetics OU RB EST , SO SCIENCE DEMIDRILLS EDITOR ALPACA-IN-CHIEF Josephine Richstad Daniel Berdichevsky ® the World Scholar’s Cup® YO U CA N DO YO UR S SCIENCE DEMIDRILLS | 1 I. Cellular Reproduction This DemiDrills section covers pages 6-29 in the official curriculum guide. It discusses cellular structures and life cycles, and pre-WW I scientific thought.1 1.01 FLOW CHART (6-7) Wait, who are you people? Insert the names of the appropriate scientists into the flow chart, then marvel at how we arrived at the theory of modern genetics. 1. _____________________posited that the male supplies a miniature person and the female supplies the womb, 2. which led 3. _____________________posited that organs grow from “gemmules,” tiny seedlings that come from parents, 7. _________________negate d previous theories with his studies on heritable traits in pea plants. _____________________ to make “homunculus” drawings of a miniature man in a sperm. ____________________ to test this “blending inheritance” theory in tobacco plants, and 5. which also formed the basis from which 8. _____________________observe d chromosomes dividing in cells, which helped unify the theories of #5 and #7 at right. 9. Polish scientist _____________________ and Belgian scientist _____________________derived his theory of evolution. Modern Genetic Theory ____________________ developed cell staining techniques that helped #8 above. 1 4. which led Ask your great-great-grandmother if you need a hint. 6. _____________________was a British naturalist who presented his findings with #5 above. SCIENCE DEMIDRILLS | 2 1.02 FALSE (6-7) Liar! Each of the statements below is false. Determine which part of the statement contains the falsehood and correct it on the line provided. Example The Onion and The Daily Show are known for their reliable journalism. satirical 1. Walther Flemming coined the term mitosis (meaning “division”) ______________________________________________________________________________ 2. Aristotle provided a theory of reproduction in History of Species and Generation of Species. ______________________________________________________________________________ 3. In addition to Aristotle, the ancient philosophers best known for contributing to reproductive theory were Socrates, Euripides, and Hippocrates. ______________________________________________________________________________ 4. The concept of pangenomics postulates that humans are formed from a collection of gemmules. ______________________________________________________________________________ 5. Mendel arrived at three principles by which we inherit “heritable traits,” (now known as chromosomes). ______________________________________________________________________________ 6. After serving as a soldier, Mendel became a minister and set up his experiments in Brno, in what was then Austria-Hungary. ______________________________________________________________________________ 7. Mendel’s experiments, which took place between 1856 and 1864, involved cross-fertilization of 10,000 pea plants. ______________________________________________________________________________ 8. Darwin presented his findings in 1858 at the Royal Academy of Science, where they were met with much reproach. ______________________________________________________________________________ SCIENCE DEMIDRILLS | 3 1.03 EXCLUSIONS (7-9) You’re cool but your friend has to leave. In the table below, each group of scientists has an outsider who doesn’t belong. In the right-hand column, write which scientist should be excluded and why. 2 Example: Doctor Doom, Doctor Evil, Doctor Octopus, Dr Horrible Doctor Evil - all of these doctors are evil, but Doctor Evil is from movies and the rest are from Marvel Comics. Alfred Sturtevant, Thomas Hunt Morgan, Carl Correns Archibald Garrod, Sewall Wright, R.A. Fisher, J.B.S. Haldane Hugo de Vries, Erich von Tschrmak, Estella Elinor Carothers Walter Sutton, Nettie Stevens, Theodor Boveri Reginald Punnett, William Bateson, Alfred Russel Wallace 2 Next, get inducted into the National Institute of Sciences and do it for real. SCIENCE DEMIDRILLS | 4 1.04 GROUPING (7-9) USA! USA! Group the following scientists by country of origin, by drawing a line from the scientist’s name to his or her country, as in the example below. Bonus! Circle all scientists that the USAD describes as embryologists. Example Dr. Sanjay Gupta William Bateson Hugo de Vries Erich von Tschermak Edmund Wilson Theodor Boveri Archibald Gerrod Nettie Stevens Sewall Wright Carl Correns J.B.S. Haldane Walter Sutton SCIENCE DEMIDRILLS | 5 1.05 TRUE OR FALSE (9) Cell biologist bingo! Some of the statements below are true. Others are false. If it’s false, make it true and explain why the statement was wrong. T F Example: Mario was able to quickly find Princess Peach not [because the Princess was in another castle] T F 1. There are about 1.8 trillion species identified on our planet. T F 2. Robert Hooke coined the term “cell” and was the first to see live cells under the microscope. T F 3. Carolus Linnaeus (1707-1778) is considered the father of taxonomy. T F 4. Linnaeus’ kingdom grouping excludes Domain Eukarya and Domain Archaebacteria. T F 5. Linnaeus’ kingdom grouping includes Animal, Vegetable, and Mineral. T F 6. There are about 50 billion cells in the body, and 10-20 times that many microbes on/in the body. T F 7. Robert Brown was a Scottish zoologist and was the first to describe the nucleus. T F 8. Robert Koch was the first to identify the bacterium anthrax, and to associate microorganisms with infectious disease. T F 9. The cell theory states that cells are the basic building units of life, that all living things are made of cells, and that all cells arise from pre-existing cells. T F 10. The scientists credited with conceiving the cell theory are Matthias Schleiden, R.A. Fisher, Theodor Schwann, and Rudolf Virchow. SCIENCE DEMIDRILLS | 6 1.06 LABEL IT! (9-10) The Miller-Urey Experiment: Home Edition.3 The Miller-Urey experiment famously proved that early Earth conditions could have fostered the genesis of organic molecules. Using the word bank below, label the parts of the experiment, using each word or phrase only once. WORD BANK Methane Electrodes Hot Water Water Vapor nucleotides amino acids carbon dioxide ammonia Cold water (represents Earth atmosphere) 3 trap (represents conditions) (Here’s the proof!) Some assembly required. Ask your parents for permission. Earth ocean (represents Earth lightning) SCIENCE DEMIDRILLS | 7 1.07 EITHER OR (10-11) Paper or Plastic? Cake or Death? Jacob or Edward? Think you’re the World’s Biggest Fan of Prokaryotes? Put your love to the test by circling the word or phrase that best completes the sentence. Example As Buzz Lightyear says, “To Infinity and (BEYOND, THEN HOME FOR A NAP)!” 1. The predecessors to cells would have been a simple layer of (PHOSPHOLIPIDS, CHITIN) around a packet of nucleic acids. 2. The etymology of the word “prokaryote” comes from pro, or “before” and karyo, or “(NUCLEUS, CELL WALL).” 3. Compared to eukaryotes, prokaryotes tend to be (BIGGER, SMALLER). 4. Prokaryotes’ primary mechanism of motility is via (CILIA, FLAGELLA). 5. The nucleoid is a cluster of (RIBONUCLEIC ACID, DEOXYRIBONUCLEIC ACID). 6. In terms of taxonomy, prokaryotes tend to be divided within two (KINGDOMS, DOMAINS). 7. (ARCHAEBACTERIA, EUBACTERIA) tend to be found in hostile environments not usually conducive to life. 8. Cyanobacteria are capable of photosynthesis due to the presence of (CHLOROPLASTS, CHLOROPHYLL). 9. In addition to being single-celled, prokaryotes are also found in (CHAINS, CONCENTRIC BALLS). 10. Some of the structures present in eukaryotes but absent in prokaryotes include (LYSOSOMES AND ENDOPLASMIC RETICULUM, CELL WALLS AND RIBOSOMES). SCIENCE DEMIDRILLS | 8 1.08 MATCHING (11-12) B6. B6. Bingo! Match the letter of the word on the left with its description on the right. Use each letter only once. a. lipid _____ 1. a structural or “worker” component in cells b. organelle _____ 2. non-differentiated cell that can form any cell type c. genome _____ 3. the fluid portion inside a cell, plus all organelles d. protein _____ 4. the fluid portion inside a cell, minus any organelles e. zygote _____ 5. a genetic information molecule f. _____ 6. hydrophobic nonpolar molecule cytoplasm g. carbohydrate _____ 7. the entirety of the genetic information for a species h. stem cell _____ 8. energy-storing molecule inside cells i. nucleic acid _____ 9. subcompartment in a cell with a specific designated function j. phospholipid _____ 10. molecule consisting of a polar head and two nonpolar tails k. cytosol _____ 11. a fertilized egg, containing half its genetic information from a father and half from a mother SCIENCE DEMIDRILLS | 9 1.09 LABEL IT! (12-13) Pin the tail on the prokaryote! Still think you’re the World’s Biggest Fan of Prokaryotes?4 In the diagram below, label each structure using a name from Word Bank 1 and a function from Word Bank 2. Example BELT - KEEPS PANTS FROM FALLING DOWN WORD BANK 1: NAMES flagella plasmid cell wall ribosome nucleoid plasma membrane pili capsule WORD BANK 2: FUNCTIONS main genetic repository small self-replicating genetic piece 4 allows adherence to surfaces phospholipid barrier supports cell structure allows attachment to other cells provides for cell movement makes proteins I have every Prokaryote album! Lose the Nucleus, Shake That Flagellum, Archae-Brakey-Bacterium… SCIENCE DEMIDRILLS | 10 1.10 FILL IN THE BLANK (13-19) Nothing Sells Like Organelles. Below is a word bank and a series of statements about cell structures inside of eukaryotes. Fill in the blanks with the appropriate word/phrase, using each only once. WORD BANK smooth endoplasmic reticulum microtubules endosymbiosis vacuoles phagocytosis nucleolus lysosomes mitochondria centrioles ribosomes intermediate filaments microfilaments endocytosis rough endoplasmic reticulum pinocytosis autophagy 1. The process of the cell membrane engulfing and bringing in exterior materials is known as ____________________; more specifically “cell eating” is known as ______________________ and “cell drinking” is known as ______________________. 2. Visually, the ______________________ gains its appearance due to the protein-manufacturing ______________________ attached to its surface. 3. Ribosomal RNA is manufactured in the ______________________. 4. The ______________________ is the site of steroid synthesis as well as detoxification. 5. Plant cells lack ______________________, which are responsible for digestion and for breaking down old cell parts in a process known as ______________________. 6. The _______________ theory holds that energy-generating organelles such as _______________ originated as a separate prokaryotic organism that entered into a eukaryotic organism. 5 7. __________________ exist on the periphery of the cell and contribute to cell movement and shape. 8. ______________________ are the largest of the three cytoskeletal elements. 9. Animal cells lack the large central ______________________ that contribute to plant cell shape, whereas plant cells lack the ______________________ used in animal cell division. 10. The position of the nucleus is maintained by a “cage” of ______________________. 5 I smell sitcom! SCIENCE DEMIDRILLS | 11 1.11 ANALOGIES (13-19) Sim Celly! Ok, this one’s a brain twister. Imagine a cell as a vast city. Below are some analogies that link the structures and functions of a city to those in a cell. Fill in the blanks to complete the analogy. Example: Bank : Money :: Nucleus : DNA 1. FedEx : Packages:: ____________________________ : Proteins 2. ___________________________ : Electricity :: Mitochondria : ATP 3. Train : Tracks :: Cellular Cargo : ______________________________ 4. City : Toxic Dump :: _________________________________ : Vacuole 5. City : Toxic Dump :: Protist : _________________________________ 6. City Pool : Water :: Cell : ____________________________ 7. Bakery : ____________________________ :: Nucleolus : Ribosomal RNA 8. Hydroelectric dam : Water :: ____________________________________ : Sunlight 9. Scaffolding : Building :: ________________________________ : Organelles 10. Recycling center : Tin cans :: ____________________________ : Old cell parts in animals SCIENCE DEMIDRILLS | 12 1.12 EXCLUSIONS (13-19) Duck, Duck… Squirrel? In the table below, each group has an outsider that doesn’t belong. In the righthand column, write which one should be excluded and why. Example: Usher, Shakira, Adam Levine, Taylor Swift spindle fibers, ribosomes, centromeres, sister chromatids mitochondria, cilia, plasma membrane, flagella pinocytosis, amoeboid movement, phagocytosis, translation internal membrane-bound structures, circular double-stranded DNA pieces, outer selective barrier, fluid-filled space anchoring devices, energy sources, enzymes, transporters, recognition molecules 6 At least not ‘til Season 32. Taylor Swift - all of these people are singers, but Taylor Swift isn’t a judge on The Voice.6 SCIENCE DEMIDRILLS | 13 1.13 COMPARISON (12-19) I’d expect that, coming from a eukaryote. Based on the descriptions below, determine whether each item fits the description of a Prokaryote (“P”) or a Eukaryote (“E”). The first one is done for you. P E Example: A large cilia-powered cell packed full of internal membranes and organelles P E 1. A cell surrounded by a cell wall made of cellulose P E 2. A cell that replicates some of its DNA via plasmids P E 3. A cell that achieves division of genetic material via centrioles P E 4. A small cell with a peptidoglycan cell wall around it P E 5. A cell with a single circular DNA molecule P E 6. A single-celled protist P E 7. A cell that transports and packages proteins via the Golgi apparatus P E 8. A cell bounded by a polysaccharide capsule and pili P E 9. A cyanobacterium capable of photosynthesizing via chlorophyll pigments P E 10. A cell with a central vacuole that maintains the cell’s shape via Turgor pressure SCIENCE DEMIDRILLS | 14 1.14 MATCHING (13-19) Do these shoes go with this dress? Match the letter of the word on the left with its description on the right. Use each letter only once.7 a. chromatid _____ 1. small projections extending out from the cell, such as in fallopian tubes b. spindle fiber _____ 2. site of detoxification and steroid synthesis c. centrosome _____ 3. site of protein receipt from the rough ER d. contractile vacuole _____ 4. structure comprised of microtubules e. microfilament _____ 5. site of waste storage in protists f. Golgi apparatus g. smooth ER _____ 6. motility structure in the cell that extends out as one or two tails h. cilia _____ 7. replicated form of a chromosome i. vesicle _____ 8. small membranous sac that pinches off from the ER j. chloroplast _____ 9. microtubule organizing center during cell division k. flagella _____ 10. double-membraned organelle with its own ribosomes l. _____ 11. maintains salt and water balance in the cell phagosome _____ 12. synonymous with “actin” 7 HEY! I see you over there trying to cram “c” into 6, 7, 9, and 10. SCIENCE DEMIDRILLS | 15 1.15 TRUE OR FALSE (13-19) Eh, true enough. Some of the statements below are true. Others are false. If it’s false, make it true and explain why the statement was wrong. T F Example: You should DEFINITELY get a faux-hawk. not [because you spent so much effort growing out dreads] T F 1. The eukaryotes are comprised of four kingdoms: animals, protests, fungi, and plants. T F 2. Examples of non-membrane-bound structures in the eukaryotic cell include ribosomes, cytoskeletal elements, and vesicles. T F 3. A chromosome is a tightly-coiled singular piece of linear DNA. T F 4. The rough ER manufactures both cytosolic and membrane-bound proteins. T F 5. The endomembrane system consists exclusively of the following four components: smooth ER, rough ER, Golgi apparatus, and nuclear envelope. T F 6. Transcription refers to the synthesis of proteins from an RNA template. T F 7. The eukaryotic cell uses vesicles to transport protein products in and out of the cell, and within the cell. T F 8. The plasma membrane consists of a bilayer of phospholipids, each of which has two phosphate “heads” and a fatty acid “tail.” T F 9. The human body contains approximately 460 cell types. T F 10. The existence of ribosomes and mitochondria in the body are examples of endosymbiosis. SCIENCE DEMIDRILLS | 16 1.16 False (19) You lie like a rug. Each of the statements below is false. Determine which part of the statement contains the falsehood and correct it on the line provided. Example: Peter Griffin and his dog Brian are the stars of TV’s Rock Center with Brian Williams. Family Guy 1. The cell cycle is divided into the two major phases of M phase and G phase. ______________________________________________________________________________ 2. Binary fission is a simple process because prokaryotes lack a nuclear envelope and have just a single chromosome. ______________________________________________________________________________ 3. With the right temperature and nutrient levels, prokaryotes are capable of dividing every 24 hours. ______________________________________________________________________________ 4. In plants, asexual reproduction ends with the formation of new chloroplasts. ______________________________________________________________________________ 5. In eukaryotic single-celled organisms, asexual reproduction can occur via mitosis, budding, fision, or regeneration. ______________________________________________________________________________ 6. In eukaryotes, each major stage of the cell cycle takes approximately half a day to complete. ______________________________________________________________________________ 7. The origin of the term cytokinesis comes from the root cyto – “cell” and kine – “to split.” ______________________________________________________________________________ 8. The cell spends approximately 90% of the time undergoing mitosis, during which time all organelles and genetic material are doubled. ______________________________________________________________________________ SCIENCE DEMIDRILLS | 17 1.17 FILL IN THE BLANK (20-22) Don’t worry, it’s just an interphase. Below is a word bank and a series of statements about the cell cycle. Fill in the blanks with the appropriate word/phrase. TRICK PLAY! All words in the word bank will be used once, and one word will be used TWICE! WORD BANK G2 Phase telophase vesicles cytokinesis nuclear envelope MTOC kinetochore S Phase sister chromatids cleavage centromere cell plate metaphase anaphase G1 Phase prophase 1. During __________________ all chromosomes are replicated into identical ________________. 2. ______________________ marks the period where sister chromatids are split in half, becoming individual chromosomes. 3. Sister chromatids are bound by an adhesive protein complex called the ______________________, which includes a distinct structure called the ______________________ which serves as an attachment site. 4. The ______________________ coordinates the movement of the spindle fibers, and orchestrates the movement of genetic material within the parent and daughter cells. 5. ______________________ marks the period where sister chromatids are aligned in the center of the parent cell. 6. ____________________ involves the replication of the building blocks for all subcellular organelles, such as the ER and Golgi apparatus. Afterward, ______________________ involves their assembly. 7. During late ______________________, the ______________________ disintegrates into ______________________, allowing spindle fibers to interact with the genetic material. 8. The nuclear envelope and nucleoli reform during ______________________. 9. In animal cells, the division of cytoplasmic materials, or ______________________, occurs when microfilaments and microtubules constrict around the cell membrane in a process known as ______________________, splitting the parent into two daughter cells. 10. In plant cells, mitosis ends once ______________________ containing cell wall material line up and fuse into a ______________________. SCIENCE DEMIDRILLS | 18 1.18 CHARTING (20-22) Check it! For each item below, read the description and choose which phase of mitosis is being described. Place a checkmark under the appropriate phase, as in the example provided. Prophase X Metaphase Anaphase Telophase Description It happens directly after interphase. Nucleoli are reassembled. rRNA synthesis stops. All chromosomes are now aligned. Sister chromatids become individual chromosomes. Spindle fibers and centrosomes disintegrate. Kinetochore microtubules drag sister chromatids to the middle. The proteins that bind sister chromatids become inactivated. It happens directly before cytokinesis. The kinetochore forms and spindle fibers attach to it. The nuclear envelope disintegrates. Centrosomes move to the opposite poles of the cell. The kinetochore microtubules shorten and pull chromosomes apart. SCIENCE DEMIDRILLS | 19 1.19 EITHER OR (22-24) I just can’t decide! Think you’re the World’s Biggest Fan of Sexual Reproduction? Put your book-smarts to the test by circling the word or phrase that best completes the sentence. Example The most celebrated writer in the English language is definitely (WILLIAM SHAKESPEARE, SUZANNE COLLINS).” 1. Female germ cells are known as (OOGONIA, SPERMATOGONIA). 2. Human germ cells possess (FORTY-SIX, TWENTY-THREE) chromosomes. 3. Evolutionarily, sexual reproduction serves the benefit of creating greater (GENETIC DIVERSITY, NATURAL SELECTION). 4. The first eukaryotes to develop sexual reproduction were (FUNGI, PROTISTS). 5. Germ cells divide by mitosis prior to (SEX, PUBERTY). 6. Unicellular organisms tend to switch from (ASEXUAL TO SEXUAL, SEXUAL TO ASEXUAL) reproduction during periods of environmental stress. 7. With the exception of gonadal germ cells, all (SOMATIC CELLS, GAMETES) are diploid. 8. Prior to meiosis, the original parent cell contains (FORTY-SIX, NINETY-TWO) sister chromatids. 9. The fusion of gametes into a zygote is known as (FERTILIZATION, OOGENESIS). 10. Sexual reproduction evolved in eukaryotes approximately (TWO BILLION, TWO TRILLION) years ago. SCIENCE DEMIDRILLS | 20 1.20 DEFINITIONS (24-25) The terms below are like trying to divide by zero: undefined. So let’s fix that! In your own words and as concisely as possible, define what happens during each phase of meiosis. 8 Example: cramming the process of consuming as many DemiDec Resources as possible as quickly as possible; in Singapore, known as mugging 1. Prophase I 2. Metaphase I 3. Anaphase I 4. Telophase I 5. Prophase II 6. Metaphase II 7. Anaphase II 8. Telophase II 8 Bonus points if your definitions match ours, but not too exactly. SCIENCE DEMIDRILLS | 21 1.21 COMPARISON (22-24) Catch a tiger by my toe, sis. Based on the descriptions below, determine whether each item fits the description of an event occurring during Mitosis (“Mi”) or Meiosis (“Me”). Mi Me Example: Occurs during gametogenesis. Mi Me 1. Chromosomes align as tetrads on the metaphase plate Mi Me 2. Genetically identical sister chromatids separate during anaphase Mi Me 3. The nuclear envelope briefly reappears only to disintegrate for a second round of division Mi Me 4. Primary means of reproduction in prokaryotes Mi Me 5. This is the body’s primary process for increasing in size Mi Me 6. Occurs in 99.9% of eukaryotes (but not all of them) Mi Me 7. In humans, 46 pairs of sister chromatids yields an end product of two sets of 46 chromosomes Mi Me 8. Type of cell division that occurs in nearly all somatic cells Mi Me 9. In humans, 46 pairs of sister chromatids yields an end product of four sets of 23 chromosomes Mi Me 10. Results in genetically distinct daughter cells SCIENCE DEMIDRILLS | 22 1.22 BY THE NUMBERS (25-26) 4 score and... 70 years ago? The USAD’s throwing a lot of numbers at us. Let’s see if we can sort them out! For each item below, fill in the missing number. Hint! The missing number gets larger every time. Example 1 is the loneliest number that you’ll ever do. 1. During meiosis, germ cells undergo ________ rounds of cell division, yielding ________ haploid gametes. 2. Though our adult somatic cells contain our entire genome, less than ________ percent of those genes are expressed in a given cell. 3. After fertilization, the zygote undergoes up to ________ divisions before the cells start to differentiate. 4. During human fertilization, each gamete contributes ________ chromosomes, yielding a diploid zygote containing ________ total chromosomes. 5. Meiosis allows for a significant reshuffling of our parental genes, with up to ________ crossing over events during prophase I. 6. Stem cells are capable of becoming any one of the ________ adult cell types in our body. 7. The human genome is comprised of approximately ________ total genes. 8. The female ovary contains a reserve of ______________________ egg cells, and males produce ______________________ sperm cells daily. 9. The genes that make up our genome comprise about ______________________ nucleotides. 10. The adult human body contains approximately ______________________ cells. 11. In humans, the independent sorting of chromosomes during metaphase I yields up to ______________________ possible combinations of chromosomes. SCIENCE DEMIDRILLS | 23 1.23 TRUE OR FALSE (26) Proceed cross-examining the witness for truthiness. Some of the statements below are true. Others are false. If it’s false, make it true and explain why the statement was wrong. T F Example: Peanuts has been in the Sunday comics for just a few years. many, many, many 9 T F 1. Stem cells are defined as those cells that can divide indefinitely and that can be induced to become one of any type of cell. T F 2. The human zygote is totipotent. T F 3. Stem cells in reproductive organs are said to be pluripotent. T F 4. Stem cells are capable of both mitosis as well as differentiation. T F 5. The distinctive characteristic of pluripotent cells is their ability to differentiate into cells that make up any of our three germ layers. T F 6. The “ultimate source” of genetic variation is random mating. T F 7. The independent assortment of chromosomes allows for increased genetic variation during prophase I of meiosis. T F 8. Crossing over refers to whole chromosomes swapping places between the father and mother’s sides. T F 9. Mutation can include the deletion, addition, subtraction, inversion, or translocation of nucleotides. T F 10. One potential application of stem cell science is in treating heart disease. 9 Seriously, when’s that Schultz guy gonna retire? SCIENCE DEMIDRILLS | 24 1.24 GROUPING (27) This mitosis is tearing us apart! Group the following specific cell types according to whether they fit under the category of dividing cells, non-dividing cells, or reproductively dormant cells. Draw a line from the cell type to its group, as in the example below. Example: Batman’s dividing cells uterine endometrial cells lens cells in the eye embryo in a plant seed Dividing Cells nerve cells in the brain liver cells prior to wound healing Non-Dividing Cells muscle cells in the heart skin cells intestinal epithelial cells hair cells in the ear Reproductively Dormant Cells SCIENCE DEMIDRILLS | 25 1.25 LABEL IT! (27) Officer, how fast was I dividing? Fill out the diagram of the cell cycle and its various checkpoints using the words and phrases in the word bank. TRICK PLAY! All words in the word bank will be used once, and one phrase will be used TWICE! WORD BANK M Phase nutrient levels chromosomes M Checkpoint G0 Phase DNA replication G2 Phase spindle attachment S Phase G2 Checkpoint G1 Checkpoint G1 Phase growth factors DNA damage cell size SCIENCE DEMIDRILLS | 26 II. The Pattern of Inheritance This DemiDrills section covers pages 30-49 in the official curriculum guide. It discusses classic Mendelian genetics, probability10, and the passsage of traits to offspring. 2.01 TWO TRUTHS AND A LIE (30-31) OK... OK... Hey, wait a minute! Each set of three statements below contains two truths and one lie. Identify which statement is the lie, and cross it out. Then correct the lie. Example: The Moon is: 10 made of cheese (made of rock) a satellite of the Earth 238,900 miles away 1. Gregor Mendel: failed the teacher certificate exam twice studied at the University of Brno grew up on a farm 2. Pea plants were ideal for Mendel’s studies because they: are easy to pollinate have easily identifiable traits are always true-breeding 3. The theory of blending inheritance: explains Mendel’s observations in pea plants did not strictly fit with all of Darwin’s data holds that offspring receive a blend of the mother and father’s traits 4. The traits Mendel monitored include: plant height flower size seed color 5. Mendel’s scientific training included: cell theory Darwinian evolution botany 6. The limits Mendel placed on his experiment include: crossing plants that differed by only one trait at a time following just 7 traits out of a possible 34 terminating the experiment after 2 generations of plants 7. Mendel’s experiments: included 50,000 pea plants took place between 1854-1865 incorporated statistical analysis 60% of the time we’ll discuss it 100% of the time. SCIENCE DEMIDRILLS | 27 2.02 DRAW A THING!11 (31) It’s like Label It, only Draw-i-er! Mendel’s classic garden pea experiment monitored genetic inheritance by following seven different traits. Name the seven traits in the blanks provided, as well as the two possible varieties of each trait. Then draw the two possible varieties. 12 11 12 That’s right “A Thing.” We don’t have the rights to “Draw Something.” Then draw a portrait of Mendel looking on approvingly. SCIENCE DEMIDRILLS | 28 2.03 MATCHING (31-33) Chicago… Bulls! Houston… Rockets! Brooklyn… Dodgers?? Match the letter of the word on the left with its description on the right. Use each letter only once. a. heterozygous _____ 1. any eukaryotic chromosome that isn’t a sex chromosome b. monohybrid cross _____ 2. one of the multiple possible forms of a gene c. dominant _____ 3. description of a genetic makeup in which the organism has two copies of the same trait for a given gene d. recessive _____ 4. the location of a gene on a chromosome e. testcross f. allele g. genotype h. phenotype i. dihybrid cross j. locus k. autosome l. homozygous _____ 5. a method of determining genetic makeup, by mating an individual displaying the dominant phenotype with an individual displaying the recessive phenotype _____ 6. description of a genetic makeup in which the organism has a mix of two differing traits for a given gene _____ 7. an allele that does not manifest in phenotype given a mixed genotype, but does manifest given a homozygous genotype _____ 8. the physical or biochemical manifestation of an organism’s genotype as it interacts with the environment _____ 9. an allele that determines phenotype even in a mixed the genotype _____ 10. a mating in which the parents differ across a single trait _____ 11. an organism’s entire genetic makeup _____ 12. a mating in which the parents differ across two different traits SCIENCE DEMIDRILLS | 29 2.04 FLOW CHART (31-33) Go with the flow! Fill in the blanks in the flow chart to get a quick recap on chromosomes, genes, and traits. Then marvel at all the things Mendel discovered, being described in terms that Mendel himself didn’t know. Chromosomes can be either… Or 1._____________________ sex chromosomes On corresponding chromosomes, different versions of the same gene (or trait) are known as 3. _____________________ and these determine your genotype. If you have two dominant traits, your genotype is 4. _______________. If you have one dominant trait and one recessive trait, your genotype is 5. _______________. The phenotype you’ll display is the 7. _______________ one. Pairs of chromosomes with corresponding sets of genes are called 2. _____________________ chromosomes. If you have two recessive traits, your genotype is 6. _______________. The phenotype you’ll display is the 8. _______________ one. SCIENCE DEMIDRILLS | 30 2.05 MATH BREAK (33) Who put this math in my science? Demonstrate your understanding of the product and sum rules by determining the probability of the following events. Express all your answers as a fraction and show your work. Example With a six-sided die, what is the probability of rolling a 2 OR a 4? 1/6 + 1/6 = 2/6 (or 1/3) 1. With a two-sided coin, what is the probability of flipping heads THEN tails? 2. With a two-sided coin, what is the probability of flipping heads THREE TIMES IN A ROW? 3. With a six-sided die, what is the probability of rolling a 2 TWICE IN A ROW? 4. With a six-sided die, what is the probability of rolling evens THEN odds? 5. With a deck or cards, what is the probability of drawing a club OR a spade? 6. A jar has 2 blue marbles, 3 red marbles, and 5 green marbles. If a marble is drawn at random, what is the probability that it will be blue OR green? 7. A jar has 3 blue marbles and 1 red one. If marbles are drawn at random, what is the probability of drawing three times and only drawing blue marbles? 8. Two two-sided coins are flipped simultaneously, twice. What is the probability that all four flips will be heads? 9. With a deck or cards, what is the probability of drawing a club THEN a spade? 10. With two six-sided dies rolled simultaneously, what is the probability of a combined roll of 7? SCIENCE DEMIDRILLS | 31 2.06 DRAW A THING! (33-35) WhoPunnett?? Consider a monohybrid cross between two generations of animals, one with a dominant smiley trait and one with a recessive frowny trait . On the LEFT SIDE, draw out the phenotypes for the F1 and F2 generations using what you know about Mendelian genetics. On the RIGHT SIDE, draw out the phenotypes for the F1 and F2 generations as you would expect to see them from the (now disproved) “blending inheritance” theory. Note: You do not need to draw out genotypes. MENDELIAN GENETICS P BLENDING INHERITANCE + + F1 F1 F2 F2 SCIENCE DEMIDRILLS | 32 2.07 MATH BREAK (33-36) Who put this science in my math13? Demonstrate your understanding of the binomial theorem and the law of independent assortment by determining the outcomes of the following theoretical monohybrid and dihybrid crosses. Be sure to show your work. Example People with the dominant H trait are hairy, and people with the recessive h trait are bald. What is the expected phenotypic ratio of the offspring in a cross between two parents that are homozygous dominant for hairiness? (H + H) x (H + H) = HH + HH + HH + HH. All will be hairy.14 1. People with the dominant X gene become X-men, but people who lack that gene (xx) do not. If a homozygous dominant X-man breeds with a heterozygous X-man, what ratio of baby X-men can we expect? 2. People with the dominant V trait have verve, and people with the recessive v trait are insipid. If an insipid person breeds with a person who is heterozygous for verve, what is the expected phenotypic ratio of the offspring? 3. Assume the genes for Sorrowful/steely eyes (S/s) and whiny/whispery voice (W/w) are independently assorted. If the best emo rockers have sorrowful eyes and whiny voices, what ratio of emo rocker offspring can we expect from two emo rocker parents with genotypes SSWw and SsWw? 4. In the example above, what ratio of offspring will be like Professor Snape (steely and whispery)? What ratio will be like Moaning Myrtle (sorrowful and whispery)? 5. Suppose two puppies are heterozygous for adorableness (A), which is a dominant trait. If these puppies have a litter of 120 babies, approximately how many of them should be adorable? 6. Suppose the same above puppies are heterozygous for both the adorableness trait (A), and the cuddliness trait (c), which is recessive. If these puppies have that same litter of 120 babies, approximately how many of them should be adorable and cuddly? 7. Consider a bee population with a trait for either a big stinger (B) or a small stinger (b). Two bees breed 101 offspring and 52 have a big stinger while 49 have a little stinger. What is the likeliest genotype of the parents? 8. In the example above, suppose that all 101 offspring have big stingers. What are all possible genotypes of the parents? 13 14 in my peanut butter in my chocolate. Sorry kids. SCIENCE DEMIDRILLS | 33 2.08 CHARTING (33-37) Got it, don’t got it, MADE it. Each item below describes a scientific concept that can be assigned to one of three categories: concepts that Mendel DIDN’T KNOW because they came after his time, concepts that Mendel knew and USED in his work, or concepts that Mendel CREATED as a result of his work. Place a checkmark under the appropriate phase, as in the example provided. Didn’t Know √ Used Created Description Space travel law of dominance binomial theorem consideration of sample size law of segregation gene-protein interactivity product rule of probability alleles are variable versions of genes law of independent assortment linked genes meiosis codominance certain “factors,” or alleles, control trait inheritance scientific method SCIENCE DEMIDRILLS | 34 2.09 TRUE OR FALSE (36-37) Why you gotta lie? Some of the statements below are true. Others are false. If it’s false, make it true and explain why the statement was wrong. T F Example: Ban Ki Moon is my secretary. Secretary General of the United Nations T F 1. Mendel’s publication was called Experiments on Peas. T F 2. In a dihybrid cross between two individuals that are heterozygous for both traits, 7/16 of the offspring are expected to have at least one recessive trait. T F 3. T F 4. Mendel tracked a maximum of two traits at a time. T F 5. Administrative duties at Mendel’s monastery prevented him from making significant scientific breakthroughs beyond his initial 1866 publication. T F 6. By the end of his life, Mendel recanted the significance of his scientific findings. T F 7. The explanation behind Mendel’s law of segregation is that egg and sperm cells become haploid during meiosis. T F 8. The explanation behind Mendel’s law of dominance is that dominant genes form a functional protein and recessive genes do not. T F 9. Like Mendel, Carl Correns conducted research on garden peas. T F 10. Hugo de Vries borrowed from Mendel’s research but did not acknowledge it in his own publication. For any of our genes, there are only two possible forms. SCIENCE DEMIDRILLS | 35 2.10 GROUPING (37) This Mendel guy exists, and he did that! The three scientists at right rekindled interest in Mendel’s experiments. Group the descriptors on the left according to which scientists they fit. Draw a line to the appropriate scientist(s), as in the example below. Example: Died before Sanjay Gupta was born had a grandfather who taught Mendel published in 1900 German Hugo de Vries studied mutation in evolution confirmed Mendel’s theories Carl Erich Correns Dutch studied extra-chromosomal factors in phenotype Austrian confirmed 3:1 ratio of inheritance Erich von Tschermak-Seysenegg SCIENCE DEMIDRILLS | 36 2.11 FILL IN THE BLANK (37-39) My mailman thought he was homozygous for the FedEx gene, but it turns out he’s only a carrier. 15 Below is a word bank and a series of statements about genetics. Fill in the blanks with the appropriate word/phrase. WORD BANK environmental stresses nucleotides genetic phenotype coding region homozygous recessive single-gene controlled Human Genome Project amino acids survival pedigree inherited gene screening heterozygous carrier 1. A ______________________ is a diagram of trait inheritance over several generations. 2. Mendel’s work paved the way for our understanding that the ______________________ is the fundamental unit of inheritance. 3. The seven traits Mendel studied affected the ______________________ of the organisms only, but not their rate of ______________________. 4. The ______________________, completed in 2003, concluded that, “All diseases have a ______________________ component, whether ______________________ or [due to] ______________________ like viruses or toxins.” 5. Increased understanding of the genetic basis for disease in turn allows for genetic ______________________, allowing us to anticipate needed treatments. 6. For a disease dependent on a recessive gene, ______________________ individuals are phenotypically normal but are said to be ______________________ because they have one copy of the defective gene. 7. For a disease dependent on a recessive gene, two heterozygous parents have a ¼ chance of having a ______________________ child. 8. Our genes are an average of 3,000 ______________________ long, and such genes encode proteins that are less than 1,000 ______________________ long. 9. As a percentage of the entire genome, the ______________________. 10. “Hitchhiker’s thumb” and “widow’s peak” are both examples of ______________________ recessive traits. 15 JOKE OF THE CENTURY! SCIENCE DEMIDRILLS | 37 2.12 TWO TRUTHS AND A LIE (38-39) Yes. NO! Yes. Each set of three statements below contains two truths and one lie. Identify which statement is the lie, and cross it out. Then correct the lie. Example: Oreos are: a savory treat (a sweet snack) made by Nabisco DELICIOUS 1. Archibald Edward Garrod: was the first to describe a sex-linked disease discovered alkaptonuria in 1902 made his discovery after scientists rediscovered Mendel 2. Alkaptonuria is: an autosomal recessive condition also known as “black urine disease” the result of a non-metabolized lipid complex 3. Alkaptonuria can damage: cartilage the pancreas heart valves 4. Cystic fibrosis: affects primarily Caucasians causes lung and digestive problems is the most common deadly inherited disorder in the US 5. Sufferers of cystic fibrosis: develop fatty deposits on the digestive lining have a nonfunctioning channel protein on cell surfaces include one in 2,500 Caucasians 6. Sickle cell anemia: affects one in 300 African Americans is the most common genetic disease in the US is the result of a nucleotide substitution mutation 7. Suffers of sickle cell anemia: do not have correctly-folding hemoglobin proteins have misshapen white blood cells can suffer organ failure 8. Tay-Sachs disease: affects one in 3,500 Sephardic Jews affects the lipid coating on neurons can cause deafness or blindness SCIENCE DEMIDRILLS | 38 2.13 DRAW A THING! (40) We Punnett Again!?? Consider a dihybrid cross between gerbils that are furry (F) or sleek (f), bucktoothed (B) or saw-toothed (b). If these traits are independently assorted, draw out two Punnett’s squares: one for a dihybrid cross between parents that are FfBb x Ffbb and one for parents that are ffbb x FfBb. Which cross will have a higher ratio of gerbils that are furry and saw-toothed? SCIENCE DEMIDRILLS | 39 2.14 FALSE (40-42) I hate science? FALSE! Each of the statements below is false. Determine which part of the statement contains the falsehood and correct it on the line provided. Example: People who can’t eat peanuts suffer from a severe nut allergy. legume allergy16 1. Familial hypercholesterolemia is inherited as an autosomal recessive trait. ______________________________________________________________________________ 2. The inheritance pattern for familial hypercholesterolemia demonstrates codominance at work. ______________________________________________________________________________ 3. For hypercholesterolemia in the US, approximately 1 in 500 individuals carries a functioning allele. ______________________________________________________________________________ 4. For the test case of J.D., doctors found that all family members had a cholesterol level of either 200 or 800 mg/dl. ______________________________________________________________________________ 5. Our body’s preferred method of acquiring cholesterol, an essential nutrient, is synthesizing it de novo in cells. ______________________________________________________________________________ 6. LDL, a protein-cholesterol complex manufactured in the bloodstream, enters cells by attaching to LDL receptors on the cell surface. ______________________________________________________________________________ 7. Sex enzymes manufactured in gonadal cells use up cholesterol as a raw material. ______________________________________________________________________________ 8. “Coated pits” refer to aggregations of LDL in arteries. ______________________________________________________________________________ 9. For the test case of J.D., hypercholesterolemia resulted from the patient having multiple copies of the LDL receptor gene. ______________________________________________________________________________ 16 Peanuts aren’t real nuts! Look it up. SCIENCE DEMIDRILLS | 40 2.15 PLAY DOCTOR (42-44) I’m not a doctor, but I play one on this DemiDrill. Consider the descriptions of the five patients below. Based on the descriptions, write the patient’s blood type in the blank provided. Then draw arrows between patients illustrating who can donate blood to whom. SCIENCE DEMIDRILLS | 41 2.16 EITHER, OR (44) We’re gonna co-dominate you! Circle the word or phrase that best completes the sentence. Example The first US President was (GEORGE TAKEI, GEORGE WASHINGTON). 1. For ABO blood typing, the model of co-dominance can be seen in the (GLYCOPROTEIN, TRECEPTOR) inheritance patterns that occur in red blood cells. 2. Karl Landsteiner noticed red blood cell (AGGLUTINATION, APOPTOSIS) occurred during some, but not all, blood transfusions. 3. The A and B (ANTIBODIES, ANTIGENS) are expressed on the surface of red blood cells. 4. Someone with blood type A would be expected to have (ANTI-A, ANTI-B) antibodies. 5. People with blood type (AB, O) have neither anti-B nor anti-A antibodies. 6. In the Barry/Chaplin paternity case of 1943, blood typing evidence showed that Chaplin (WAS, WASN’T) the father. 7. Because of the way co-dominance works, ABO blood typing can result in (FOUR, EIGHT) distinct phenotypes, excluding the additional effect of the Rh factor. 8. The inheritance pattern for Rh factor follows a (COMPLETE DOMINANCE, CODOMINANCE) model. 9. Mothers who are (RH-, RH+) can run the risk of pregnancy complications depending on the father’s blood type. 10. The solution to the above complications is an injection of (ANTIBIOTICS, ANTIBODIES). SCIENCE DEMIDRILLS | 42 2.17 COMPARISON (44) Do these genes look ok on me? Based on the descriptions below, determine whether each item fits the description of Pleiotropy (“Pl”) or Polygenic Inheritance (“Po”). Pl Po 1. height falls under this model Pl Po 2. defined by one gene controlling multiple phenotypic effects Pl Po 3. affects a range of continuous variations, rather than a single discrete trait Pl Po 4. root cause for a phenomenon Mendel noted but didn’t investigate further Pl Po 5. skin color falls under this model Pl Po 6. defined by multiple genes controlling a single phenotypic effect Pl Po 7. its root words mean “many” and “affecting” Pl Po 8. cause for albinism Pl Po 9. BRCA genes exemplify this phenomenon Pl Po 10. explanation behind uniform coloration of plant seed coat, flower, and petiole SCIENCE DEMIDRILLS | 43 2.18 COMMONALITIES (44-46) You guys both like music, you should totally date. Below is a series of connected items. For each group, describe how they are related in the space provided. An example is done for you. Example: right hand in, right hand out, shake it all about, turn yourself around color blindness and gender, sweet pea flower color and grain shape, fruit fly gender and eye color William Bateson, Reginald Punnett, and Edith Rebecca Saunders Breeding flies in the dark, identifying more than two dozen mutant genes, subjecting flies to X-ray radiation, and winning the Nobel Prize 9:3:3:1, 15.6:1.0:1.4:4.5, 782:1011:2459:0 Genes on chromosomes are linear, recombinant percentages correlate with gene distance, linkage mapping of Drosophila 17 That’s what it’s all about. All are instructions for doing the Hokey Pokey.17 SCIENCE DEMIDRILLS | 44 2.19 PLAY DOCTOR (47) You’re a fertility counselor! Study the pedigree for “DemiDisorder” below. Then, based on what you know about genetic inheritance answer the three questions below the pedigree. KEY Normal male Affected male Normal female Affected female 1. Is DemiDisorder an autosomal or sex-linked disorder? ______________________________________________________________________________ 2. Is DemiDisorder a dominant or recessive trait? ______________________________________________________________________________ 3. If the individual marked with the arrow is planning on having a baby with someone who does not have Demidisorder, what is the highest percent chance that their offspring will have DemiDisorder? ______________________________________________________________________________ SCIENCE DEMIDRILLS | 45 2.20 FLOW CHART! (46-47) Who’s ready to go with the flow? Insert the appropriate words into the flow chart, then marvel at the intricacies of how the tiny little SRY gene determines our very gender. 18 The female genotype is 1. ____________________ The male genotype is 2. ____________________ Males get the “SRY” gene on the 3. ______________________ chromosome. SRY is an abbreviation for 4. ______________________ All embryos start out with gonads that will become 5. _________________ plus both male and female reproductive tracts. Without the SRY gene, the 6. __________ tract is killed off. 18 With the SRY gene, the 7. _________________ tract is killed off. SRY turns on a set of genes responsible for the maturation of the 8. ________________ After the SRY gene causes a cascade of events that develop the fetus into a male, the Stork comes and drops the baby off in a cabbage patch. SCIENCE DEMIDRILLS | 46 2.21 FILL IN THE BLANK (47-48) Hi, My Name is _________19 Below is a word bank and a series of statements about genetic inheritance and genetic testing. Fill in the blanks with the appropriate word/phrase. WORD BANK chorionic villus sampling mitochondria circulation sperm energy fetal invasive pedigree amniocentesis oocyte karyotyping Y chromosome circular membrane uterus in utero 1. The best way to trace male lineage is using DNA from the ______________________ and the best way to trace female lineage is using DNA from the ______________________. 2. During fertilization, mitochondria from the ______________________ do not make it into the ______________________, and therefore such DNA is not passed on from fathers to offspring. 3. Mitochondrial DNA is ______________________ like a prokaryote, and mutations to the DNA can affect ______________________ production. 4. ______________________ analysis, which traces the passage of traits across generations, can help genetic counselors determine the likelihood that a couple will pass on genetic diseases to children. 5. ______________________ is the general term for removing ______________________ cells from a pregnant woman, for the purpose of chromosomal analysis. 6. One of the newest discoveries in genetic testing is the fact that fetal cells can be detected in the mother’s ______________________, which would mean the possibility of performing chromosomal analysis much less invasively. 7. Another innovation has been testing the embryo before it attaches to the ______________________, removing one of the eight embryonic cells for testing and allowing the rest to form a normal embryo. 8. ______________________ is consider the most ______________________ form of chromosomal analysis because it involves removing a piece of the fetal membrane. 9. ______________________ involves inserting a needle into the fluid part of the fetal ______________________ to obtain cells. 10. With the exception of testing by circulation, the other forms of chromosomal analysis are conducted ______________________, or “in the womb.” 19 Mike! – Mike SCIENCE DEMIDRILLS | 47 III. Molecular Genetics This DemiDrills section covers pages 50-81 in the official curriculum guide. It discusses the historic discovery of DNA, and the nuts and bolts of transcription and translation. 3.01 FLOW CHART (50-54) A graphical synthesis of the modern synthesis. Fill in the missing phrases on the flow chart below. Then speculate on how many licks it takes to get to the tootsie roll center of… speciation through genetic diversity. Darwin’s idea of 1. ______________________ specifies that individuals within a species have variations in their heritable traits. In each generation, there are 2. ______________________ than the environment can support. Individuals with the most favorable variations survive and reproduce and are said to be 3. ______________________ Mendel’s laws of inheritance work only under the following conditions: The population is very 4. __________________________ No major 5. ___________________________ occur in the population that would affect genotypes No 7. _________________________ occurs that affects the population’s distribution If a population becomes genetically isolated, 6. ___________ speciation can If a population becomes geographically isolated, 8. __________ speciation can occur. Natural selection is not occurring Mating is 9 ________________________ The 10. ______________ Theorem provides a mathematical model for trait frequencies when the above conditions aren’t met Modern Synthesis Individuals are variable for nearly all traits, due to 11._____________. 12.________________ of chromosomes also leads to genetic recombination. Individuals pass their genes to offspring intact and independently of other genes. The environment cannot support all offspring. Therefore the individuals that survive and reproduce most have the best alleles for their environment. Small genetic changes in individuals, or 13._____________ acted on by natural selection will lead to speciation, or 14.________________. Evolution can also occur due to genetic drift, non-random mating, or migration. SCIENCE DEMIDRILLS | 48 3.02 MATCHING (50-54) And now to thank all the little people who brought Darwin and Mendel together. Match the letter of the scientist on the left with their contribution to molecular genetics on the right. Use each letter only once. a. Ernst Mayr _____ 1. noted mutations in sequential generations of fruit flies b. Udny Yule _____ 2. offered a plant model of sympatric speciation, due to errors in meiosis and polyploidy c. R. A. Fisher d. August Weismann e. Thomas Morgan f. Theodosius Dobzhansky g. Walther Flemming h. Alfred Wallace i. Hardy-Weinberg j. G Ledyard Stebbins, Jr.20 k. William Castle _____ 3. created a mathematical model for allele frequency within a stable population _____ 4. presented findings on Asian and Australian animals to the Linnean Society of London _____ 5. wrote Genetics and the Origin of Species, and defined evolution as “a change in allele frequency within a gene pool” _____ 6. noted that allele frequency is unchanging within nonevolving populations _____ 7. wrote The Evolutionary Synthesis and proposed the “biological species concept” which defines speciation by the ablility to interbreed and produce viable offspring _____ 8. used statistics to quantify a population’s genetic variations over time _____ 9. described behavior of chromosomes during different stages of mitosis _____ 10. studied crossing-over during meiosis and posited that somatic cells do not pass on hereditary material in the same way as germ cells _____ 11. posited that the ratio of allele frequency can change if certain genotypes are selected out of the gene pool 20 That would be an AMAZING business card. SCIENCE DEMIDRILLS | 49 3.03 EXCLUSIONS (54-56) Ketchup, Mustard, Mayonnaise, Cobalt.21 In the table below, each group has an outsider that doesn’t belong. In the right-hand column, write which one should be excluded and why. Example: iphone, ipad, granny smith, Macintosh uracil, adenine, cytosine, guanine, thymine cytosine, thymine, uracil, guanine sulfur, nitrogenous base, sugar, phosphate injecting mice with S-strain pneumonia, heating S-strain pneumonia, combining S-strain and R-strain pneumonia in mice, transforming pneumonia strains in a test tube identifying deoxyribose as part of nucleic acids, determining the molecular components of nucleic acids, identifying the pairing of A-T and G-C, proposing a tetranucleotide hypothesis 21 Exactly how I like my burger. granny smith - all of these things are Apple products, except for a granny smith, which is just an apple SCIENCE DEMIDRILLS | 50 3.04 FALSE (56-58) Ummm… are you sure about that? Each of the statements below is false. Determine which part of the statement contains the falsehood and correct it on the line provided. Example Watson and Crick conducted a historic 1804-1806 journey from St. Louis to the Pacific. Lewis and Clark 1. Frederick Griffith noted that a non-virulent streptococcus strain could become virulent do to a “transforming principle.” ______________________________________________________________________________ 2. Oswald Avery of Rockefeller University noted that the virulent strain of pneumococcus lacks a capsule. ______________________________________________________________________________ 3. Avery attempted to isolate what was causing the transforming principle, noting that transforming activity increased as the concentration of S strain became more dilute. ______________________________________________________________________________ 4. Whatever was transforming the virus had characteristics that were all associated with protein. ______________________________________________________________________________ 5. Avery and his colleagues noted that the transforming substance could be destroyed by protein, carbohydrate, and RNA-digesting enzymes. ______________________________________________________________________________ 6. Hershey and Chase were able to definitively disprove Avery’s theories. ______________________________________________________________________________ 7. Hershey and Chase used radioactively-tagged phosphorous and sulfur to illustrate that DNA was being integrated into bacteria from a bacteriophage (a bacterium that infects viruses) ______________________________________________________________________________ 8. Using chromatography, Edwin Chargaff illustrated that different species all have the same proportions of nucleotides. ______________________________________________________________________________ 9. “Chargaff’s Rule” suggests an A-G, T-C pairing of nucleotides within DNA. ______________________________________________________________________________ SCIENCE DEMIDRILLS | 51 3.05 DEFINITIONS (58-60) Let’s define this relationship! On the left is the name of a scientific technique that was crucial to advancing our understanding of DNA. In your own words and as concisely as possible, define the technique, then name the famous scientist(s) who used it, and how it was used towards arriving at the nature of DNA. Example: The Total Gym 1. Centrifugation 2. Chromatography 3. X-ray Crystallography 4. Molecular model building A piece of gym equipment capable of being used for a variety of exercises. Chuck Norris used The Total Gym to get TOTALLY RIPPED. SCIENCE DEMIDRILLS | 52 3.06 BY THE NUMBERS22 (60-62) I got ___ problems. The USAD’s throwing a lot of numbers at us. Let’s see if we can sort them out! For each item below, fill in the missing number. Hint! For each blank, the missing number is either the same as or greater than the previous one. BONUS! After all the numbers stuff we’re going to throw in some stuff about codons. Fill in the missing letters for the codons. Example Subway’s doing a special on $ 5 footlongs. 1. Under the semiconservative model of DNA replication, ________ strand(s) of DNA is(are) newly generated and ________ strand(s) is(are) preserved. 2. Each RNA codon is made up of ________ nucleotide “letters.” 3. Meselson and Stahl used radioactive isotopes of nitrogen to trace DNA replication patterns. Normal nitrogen has ________ neutrons. Meselson and Stahl used radioactive variants of nitrogen with ________ or ________ neutrons. 4. Meselson and Stahl checked the DNA replication patterns every ________ minutes, due to the rapid rate of prokaryotic replication. 5. Proteins are made up of ________ possible amino acids. 6. There are ________ possible codons for encoding all the above amino acids. 7. ________ percent of our genome is non-coding. 8. BONUS! The “start” codon consists of the letters ________. This codon also codes for the amino acid methionine. 9. The codon ________ is distinct for being the only codon to program for the amino acid tryptophan. 10. The three “stop” codons are ________, ________, and ________. 22 And by the letters! SCIENCE DEMIDRILLS | 53 3.07 ANALOGIES (62-63) So it’s like that, huh? Below are some analogies that link the methods and components of DNA replication to everyday life. Fill in the blanks to complete the analogy. Example: bricks : wall :: nucleotides : DNA 1. bottle opener : bottle :: ____________________________ : DNA 2. ___________________________ : DNA replication :: insertion point : surgery 3. primer : DNA :: ______________________________ : sourdough bread 4. Spell Check : MS Word :: _________________________________ : DNA 5. track layer : railway tracks :: _________________________________ : RNA primer 6. crane : skyscraper :: ____________________________ : daughter strand 7. glue gun : rhinestones :: DNA ligase: ____________________________ 8. tortoise : hare :: ____________________________________ : leading strand SCIENCE DEMIDRILLS | 54 3.08 TRUE OR FALSE (63-65) Mutant school. Some of the statements below are true. Others are false. If it’s false, make it true and explain why the statement was wrong.23 T F Example: Coffee is a beverage that comes from tortillas. beans [roasted, not refried] T F 1. Some mutations can be lethal, some can confer an advantage, but most have no effect. T F 2. Mutation is the primary force behind macroevolution. T F 3. Silent mutations occur primarily when a nucleotide is substituted in the third letter of a codon. T F 4. Sickle cell anemia results from a missense mutation in the hemoglobin gene. T F 5. Sickle cell anemia is a dominant trait, resulting from one parent having the mutation. T F 6. Nonsense mutations result from a substitution that results in a stop codon. T F 7. Missense mutations result in the same amino acid being coded for regardless of the mutation. T F 8. Frameshifts primarily occur due to point mutations. T F 9. In a frameshift mutation, all codons after the mutation point are affected. T F 10. Some of the environmental factors that affect mutation include steroids, radiation, and cigarette smoke. 23 Preferably in a sarcastic voice. SCIENCE DEMIDRILLS | 55 3.09 LABEL IT! (61-67) That’s nonsense! 1) Look at the DNA sequence below. Using base pairing rules, fill in the blanks to transcribe the sequence into a piece of mRNA. 2) Use the codon table below to translate the mRNA sequence into a protein, by filling in the blanks. 3) Using base pairing rules, write out the tRNA anticodon sequence that would be required to bring these amino acids together. DNA sequence: TAC GAA TGA TTA TCA CCA ACC ATT mRNA sequence: _____ _____ _____ _____ _____ _____ _____ _____ protein sequence: _______ _______ _______ _______ _______ _______ _______ _______ tRNA anticodons: _____ _____ _____ _____ _____ _____ _____ _____ SCIENCE DEMIDRILLS | 56 3.10 CHARTING (65-66) RNA? A OK! Based on the descriptions below, determine whether each item fits the description of mRNA, tRNA, or rRNA.24 Place a checkmark next to the appropriate column. The first one is done for you. mRNA X tRNA rRNA Description It stands for “messenger RNA.” Roger Kornberg discovered how DNA is transcribed into this form of RNA Most likely to be found in double-stranded form Carries information in an anticodon sequence Known to forms a complex with dozens of proteins Carries information in a codon sequence Pairs with and carries specific amino acids Helps to hold the other RNA forms in the correct position It is transcribed directly from a DNA gene template Made not just in the nucleus but in the nucleolus Most directly involved with assembling and synthesizing the protein 24 Or cRNA. Just kidding. There’s no such thing as cRNA. Or is there? SCIENCE DEMIDRILLS | 57 3.11 FILL IN THE BLANK (67-68) Allow me to translate.25 Below is a word bank and a series of statements about transcription and translation. Fill in the blanks with the appropriate word/phrase. WORD BANK mRNA translation initiation P site cap Small ribosomal subunit intron elongation A site exon transcription large ribosomal subunit termination tRNA poly A tail disulfide bridge 1. For the process of creating RNA from a DNA template, as well for creating protein from an RNA template, the three major steps are ________________, ________________, and ________________. 2. _________________ involves taking a DNA template and making a piece of _________________. 3. As messenger RNA moves to the cytoplasm, extra nucleotides (or a “_____________________”) are added to the end in order to prevent degradation, as well as a ______________________ consisting of multiple adenine nucleotides. 4. Different ______________________ portions can be stitched together in novel combinations, in order to create different messenger RNA templates that encodes for differing proteins. 5. Though ______________________ portions are excised from the messenger RNA template, scientists are increasingly finding that these “junk” portions may in fact serve a purpose. 6. The process of ______________________ involves using the RNA template to construct a protein, and is primarily carried out by ______________________. 7. Protein construction begins when a ______________________ binds with a ______________________, giving the RNA and amino acids a place to interface. 8. The first amino acid connects to a ______________________ (or “docking” site) on the ribosome. 9. Subsequent amino acids attach to the ______________________ on the ribosome and await their turn to enter the “docking” site. 10. Proteins can be further modified in the endomembrane system, such as by being fitted with a ______________________. 25 But first, can you transcribe? SCIENCE DEMIDRILLS | 58 3.12 DEFINITIONS (67-68) You had one job! On the left is a type of protein. On the right, define that protein’s cellular function/job. The first one is done for you Example: lactase antibody actin and myosin nuclear matrix proteins insulin reverse transcriptase, ligase, or helicase aquaporin, calcium channels receptor for a neurotransmitter Enzyme (speeds chemical reactions) SCIENCE DEMIDRILLS | 59 3.13 FALSE (69-70) And now for all you molecular weirdos. Below are a series of statements about RNA-related molecules. Each of them contains a portion that is false. Determine which part of the statement contains the falsehood and correct it on the line provided. Example If you’re looking for mountain-climbing gear, a good bet would be R.N.A.. R.E.I. 1. After introns are excised from the mRNA, they are generally discarded by the cell. ______________________________________________________________________________ 2. Sidney Altman and Thomas Cech discovered that RNA is capable of excretory activity. ______________________________________________________________________________ 3. Ribozyme is capable of self-ligating activity following transcription and protein synthesis. ______________________________________________________________________________ 4. Cech and Altman’s research led to the “Protein World” hypothesis. ______________________________________________________________________________ 5. Micro RNAs are generally a few hundred nucleotides in size. ______________________________________________________________________________ 6. Short interfering RNAs are the product of enzymatic digestion of DNA. ______________________________________________________________________________ 7. Short interfering RNAs can add ester groups to DNA in order to stop or start genetic expression. ______________________________________________________________________________ 8. GTP is used as a source of amino acids during protein synthesis. ______________________________________________________________________________ 9. GTP and cyclic AMP serve as catalytic molecules in the signal transduction pathway. ______________________________________________________________________________ SCIENCE DEMIDRILLS | 60 3.14 PLAY DOCTOR26 (71-72) This is a restricted area! First answer the historical questions on the lines provided. Then solve a BRAIN-NUMBING logic puzzle about restriction enzymes! 1. Who was the first scientist to isolate enzymes (generally) that cut DNA at specific sequences? ______________________________________________________________________________ 2. What was the name of the enzyme that Hamilton Smith discovered? ______________________________________________________________________________ 3. What was the name of Hamilton Smith’s collaborator at Johns Hopkins? ______________________________________________________________________________ 4. Suppose you are a scientist seeking to isolate the nucleotide sequence “AATTCGGATCCTCGAT.” You have a larger piece of DNA (labeled “Original DNA Sequence” below) that contains the desired nucleotide sequence, as well as various restriction enzymes available to you (see the “Restriction Enzyme Table” below). Based on what you know about restriction enzymes, what enzyme(s) will you need to use to isolate the desired sequence? ______________________________________________________________________________ Original DNA Sequence AAGAAGCTTGGTACCGAATTCGGATCCTCGATATCTTCAAGCTTGGTACC Restriction Enzyme Table Restriction Enzyme Cut Sequence HindIII A / AGCTT EcoR1 G / AATTC BamH1 G / GATCC EcoRV GAT / ATC Kpnl GGTAC / C 26 As in PhD doctor, not MD doctor. SCIENCE DEMIDRILLS | 61 3.15 ORDER IT! (73) Who ordered the PCR?27 Below are all the steps of the polymerase chain reaction. But they are out of order. Reorder the steps into chronological order. A. Bring the mixture to 95 degrees Celsius. B. Bring the mixture to 50-60 degrees Celsius. C. The primers anneal to the complementary sequences of DNA. D. Synthesize primers that are complementary to the DNA being replicated. E. Add Taq polymerase. F. Taq polymerase adds nucleotides to the primers, duplicating the DNA. G. Mix the target DNA sequence, primers, and extra nucleotides. H. Repeat the entire procedure until target DNA has been replicated in sufficient quantities. I. Bring the mixture to 72-80 degrees Celsius. J. The hydrogen bonds of the DNA break, separating the DNA into single strands. 1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 27 Kary Mullis did. SCIENCE DEMIDRILLS | 62 3.16 TRUE OR FALSE (73-75) Less moaning, more cloning. Some of the statements below are true. Others are false. If it’s false, make it true and explain why the statement was wrong. T F Example: When you’re buying a computer, the two basic choices are Mac or ChromeOS. Windows T F 1. Insulin resistance can occur when a patient’s immune systems eventually resists injections of animal versions of insulin. T F 2. The most common animal versions of insulin used in patients are pig, sheep, or cow. T F 3. Animal versions of insulin are genetically identical to the human version. T F 4. Insulin is a gall bladder hormone that modulates sugar intake in cells. T F 5. Type I diabetes patients do not respond to insulin, whereas Type II patients do not manufacture it. T F 6. The insulin gene can be inserted into plasmids, self-replicating DNA loops incorporated into bacteria. T F 7. Insulin was the first human therapeutic protein produced using recombinant DNA technology. T F 8. This technology can also be applied to produce erythropoietin for growth treatment. T F 9. Interferon is another product that can be made with this technology, for patients undergoing chemotherapy. T F 10. Plasmid technology allows for mass-production of protein by taking advantage of the fact that bacteria divide every 30 minutes. SCIENCE DEMIDRILLS | 63 3.17 TWO TRUTHS AND A LIE (73-75) Analysis: 66% True. Each set of three statements below contains two truths and one lie. Identify which statement is the lie, and cross it out. Then correct the lie. Example: Harry Potter is: best friends with Ron Weasley the son of two Muggles (the son of two wizards) the Chosen One 1. stands for “restriction fragment length polymorphism” has been used to exonerate wrongly-accused suspects cannot be applied to paternity suits RFLP: 2. The ingredients in gel electrophoresis include: agarose a chamber filled with water an electrical current 3. SNP: refers to “single nucleotide polymorphism” largely results from frameshift mutations can be used to genetically identify individuals 4. In gel electrophoresis, DNA: acts as a base migrates to the positive side fragments spread into a ladder pattern 5. For forensic cases: DNA analysis requires the use of restriction enzymes analysis can take place within a few hours of obtaining the sample DNA samples must be amplified in plasmids larger samples travel faster than smaller ones 6. During electrophoresis: the gel acts as a molecular sieve different individuals’ DNA will display different patterns 7. According to the results of the HGP, humans’ genomes: differ by about 3.1 million base pairs are only 1% different are scattered throughout the chromosomes 8. The most common sources of DNA evidence are: bone marrow hair saliva SCIENCE DEMIDRILLS | 64 3.18 EITHER, OR (76-77) Attack of the Fruit Mutants!28 Circle the word or phrase that best completes the sentence. Example Australia is home to the (EMU, MUMU), a large flightless bird. 1. In addition to breeding peas for scientific purposes, Mendel was also hoping the peas would serve a (COMMERCIAL, MEDICINAL) purpose. 2. Darwin’s use of the term “natural selection” arose from his knowledge of artificial selection in (PIGEON, HAWK) breeding.29 3. Artificial selection has been taking place since animals and plants were domesticated (10,000, 20,000) years ago. 4. An ancient example of artificial selection is (USING FERTILIZER, GRAFTING). 5. The difference between genetic engineering and genetic modification is that modification takes place in the (NUCLEUS, GERMLINE). 6. Genetic modification can occur using a (RETROVIRUS, PROTOVIRUS). 7. In the above example, a virus is used as a (PLASMID, VECTOR) or “carrier” of a gene that becomes expressed in the organism. 8. Another option is microinjecting the gene into the (PRONUCLEUS, PROTONUCLEUS) of the sperm. 9. Finally, (STEM, OOCYTE) cells can be transferred into an embryo. 10. GMOs have been used to (INCREASE, REDUCE) reliance on pesticides. 28 29 GMOs that is. FLY, Bird of Science! SCIENCE DEMIDRILLS | 65 3.19 FLOW CHART (77-78) Epigenetics and YOU. Fill in the missing phrases on the flow chart below, using the included word bank.30 Then think really hard about whether you should go through with your plan of irradiating yourself to become an X-Man. WORD BANK promoter phosphate-sugar autoimmune disease diet transcription factors chemicals chromosomes diabetes mental disorders methyl development pharmaceuticals histones cancer aging epigenetic factors EPIGENETIC TRIGGERS Specific environmental factors that affect genetic expression include: 1.__________________ 2.__________________ MECHANISM 1 If a 6.________________________ group attaches to the DNA’s backbone, it can prevent 3.__________________ 4.__________________ 10._______________________ in general can affect how loosely or tightly 11._______________________ bind the 7.________________________from attaching to the DNA’s Ailments that can result include: 8._______________________, affecting genetic expression. 13.__________________ 14.__________________ 15.__________________ 16.__________________ CONSEQUENCES 30 You’re WELCOME! MECHANISM 2 12._______________________ together, affecting genetic expression. SCIENCE DEMIDRILLS | 66 3.20 MATCHING (78-79) Quit reading my genes. Match the letter of the scientists on the left with their contribution to the Human Genome Project on the right. BONUS CRAZINESS #1! Most letters will be used only once, but three letters will be used TWICE. BONUS CRAZINESS #2! Note that one answer requires THREE letters. a. Herbert Boyer _____ 1. sequenced the cystic fibrosis gene b. Alfred Sturtevant _____ 2. supported the Human Genome Project via a public-private venture c. J. Craig Venter d. Frederick Sanger e. Thomas Morgan f. Stanley Norman Cohen g. James Watson h. Francis Collins i. Paul Berg _____ 3. second director of the National Center for Human Genome Research _____ 4. first director of the National Center for Human Genome Research _____ 5. created the first genetic linkage map _____ 6. owner of the lab in which #5 worked _____ 7. Stanford scientists credited with identifying, cloning, and sequencing several disease genes _____ 8. developed techniques for sequencing DNA _____ 9. founder of Celera Genomics _____ 10. won TWO Nobel prizes SCIENCE DEMIDRILLS | 67 3.21 BY THE NUMBERS (78-79) I’m your Number ___ Fan! The USAD’s throwing a lot of numbers at us. Let’s see if we can sort them out! For each item below, fill in the missing number. Hint! For each blank, the missing number is either the same as or greater than the previous one. Example In a house in the woods, Goldilocks encountered 3 bears. 1. Less than ________ percent of our genome is made up of coding regions. 2. ________ percent of the budget for the Human Genome Project was set aside for studying the ethical, legal, and social implications of the project. 3. ________ percent of our genome is made up of non-coding sequences that keep repeating, and scientists are still trying to figure out what these repeating sequences do. 4. ________ percent of the Human Genome project was completed and presented in June of 2000. 5. As humans, we all share ________ percent of the same genome. 6. The Y chromosome has ________ genes on it. 7. The Human Genome Project began in the year ________ and was completed in ________. 8. Chromosome #1 has ________ genes on it. 9. The average gene size is about ________ base pairs. 10. Humans have about ________ genes in total. 11. Humans have single-nucleotide differences in their genome at about ________ locations. 12. The original budget of the Human Genome Project was ________ dollars, with a targeted completion time of 15 years.31 31 But they completed it early. They were that frickin’ smart! SCIENCE DEMIDRILLS | 68 IV. Comprehensive This DemiDrills section pulls from all over the curriculum guide,32 synthesizing what we have learned. 4.01 TIMELINE (89-92) So… that happened. Fill in the timeline below. Each year (or span of years) corresponds to an event in the event bank. Match the events to the years. Note: Timeline is not to scale… like not even close. EVENT BANK Mendel publishes Experiments on Plant Hybridization Theodosius Dobzhansky merges genetics and evolutionary bio Thomas Hunt Morgan proposes chromosomal theory of inheritance Kary Mullis creates PCR Schleiden, Schwann, and Virchow develop the cell theory Watson and Crick determine structure of DNA the Miller-Urey experiment Birth of the Hardy-Weinberg Theorem Human Genome Project completed Robert Hooke describes cells Alfred Sturtevant creates first linkage map Rosalind Franklin X-ray diffraction of DNA Ernst Mayr arrives at biological species concept Birth of the Chargaff rule Darwin publishes On the Origin of Species 1859 1913 2003 1953 1908 1665 1951 1937 1600 2013 1950 1953 1865-66 1910-11 1839 32 Skim fast! 1942 1985 SCIENCE DEMIDRILLS | 69 4.02 LABEL IT! (13-19) You’ve played the prokaryote version, now play the sequel! Below is a diagram of a human cell. Use the word bank to fill in the blanks. BONUS! Three words in the bank will NOT be used.33 WORD BANK Smooth endoplasmic reticulum mitochondrian lysosome Free ribosome Golgi body cytoplasm cell coat centriole rough endoplasmic reticulum ribosome chromatin nucleus nuclear pore plasma membrane nucleolus nuclear envelope 33 It’s a trap!! SCIENCE DEMIDRILLS | 70 4.03 CHARTING I replicate myself. I replicate myself. For each item below, choose whether the description fits mitosis, meiosis, transcription or translation. Place a check box under the appropriate column. Mitosis Meiosis Transcription Translation Description Results in the creation of four daughter cells Results in the creation of RNA Results in the creation of two identical daughter cells Results in the creation of a protein Requires two cycles to complete Consists of four phases Includes crossing-over Involves pairing of codons and anticodons U is substituted for T occurs inside the nucleus occurs in the cytoplasm or on the rough ER process for perfectly duplicating DNA SCIENCE DEMIDRILLS | 71 4.04 FILL IN THE BLANK Diversity Awareness. A lot of things can influence genetic diversity. Fill in the blanks below, using the words from the word bank. Then marvel at the diversity of life.34 WORD BANK codominance DNA methylation nonsense mutations total dominance point mutations frameshift mutations histone modification pleiotropy independent assortment sexual reproduction missense mutations epigenetics incomplete dominance polygenic inheritance crossing over meiosis 1. Much of our genetic diversity simply arises from the fact that during ______________________ we receive a combination of genes from both parents. 2. During ______________________, sister chromatids undergo ______________________ before becoming haploid, and this swapping of genetic material ensures that our gametes will have novel combinations of our parents’ genes. 3. The law of ______________________ assures that all our traits get inherited in offspring separately from each other (although linked genes defy the law). 4. Most traits fall under a pattern of ______________________ in which heterozygous individuals only display the phenotype associated with one trait (and not both). 5. However, in instances of ______________________ heterozygous individuals display an intermediate phenotype (compared to homozygous individuals), and in instances of ______________________ multiple traits show at once. 6. Furthermore in instances of ______________________ a single gene influences multiple traits. ______________________ is the opposite; multiple genes influence a single trait. 7. At the molecular level, ______________________ changes the genome at the level of a single nucleotide. Most of these are considered ______________________ because the resulting amino acid that is encoded is unaffected. 8. Sometimes, ______________________ result when a nucleotide substitution results in a “stop” codon, ending transcription prematurely. Or ______________________ occur when an addition or deletion causes all downstream codons to be affected. 9. The study of ______________________ tracks how the environment can affect genetic expression, such as in the case of ______________________ preventing transcription factors from binding a gene, or ______________________ affecting proteins’ access to chromosomes. 34 Seriously, you have to marvel. If you just complete the DemiDrill without marveling, I’ll KNOW. SCIENCE DEMIDRILLS | 72 4.05 PLAY DOCTOR Quick triage! The first set of questions below is about blood donation. The second set is about genetic pedigrees. Answer the questions! Suppose a lady is at the hospital and needs a blood transfusion. Her parents both volunteer to provide the transfusion. The lady’s blood type is O. Given this… 1. What are all her parents’ possible blood type combinations? (List novel combinations only.) ______________________________________________________________________________ 2. Will at least one parent necessarily be a match for donating blood? ______________________________________________________________________________ 3. Assuming that the lady is RH negative, what blood type(s) must the parents have in order to donate blood to their child? ______________________________________________________________________________ KEY Normal male Affected male Normal female Affected female 4 5 6 Suppose the above pedigree represents the transfer of “DemiDisorder,” a recessive X-linked gene. 4. For male #4 above, will the individual’s phenotype be normal or affected by DemiDisorder? ______________________________________________________________________________ 5. For female #5 above, will the individual’s phenotype be normal or affected? ______________________________________________________________________________ 6. For offspring #6 above, what is the percent chance the child will be affected if it’s a girl? If it’s a boy? ______________________________________________________________________________ SCIENCE DEMIDRILLS | 73 4.06 PLAY SCIENTIST Quick assay! Be a good scientist and formulate a hypothesis… regarding the answers to the following questions. 1. Suppose that a pair of homologous chromosomes contain genes A, B, C, and D. (These genes are not necessarily arranged in alphabetical order on the chromosome.) The table below contains the rates of crossing over for every combination of two genes. Based on what you know about linkage maps, draw a chromosome and position genes A, B, C, and D in their likeliest arrangement relative to each other. Genes Crossed Percentage crossing-over occurs AxB 50% AxC 30% AxD 30% BxC 20% BxD 80% CxD 60% 2. Consider the restriction enzyme table below. If the piece of DNA below is cut with each of these enzymes in sequence, draw slashes where you would expect the DNA to be cut. AACTGTACAAGCTTAAGAATTCTGGATCCTGGATTCAAGCTTGAATTCAATGGATCCC Restriction Enzyme Cut Sequence HindIII A / AGCTT EcoR1 G / AATTC BamH1 G / GATCC SCIENCE DEMIDRILLS | 74 4.07 ORDER IT! You’re a detective.35 Use RFLP to set an innocent suspect free, by rearranging the below events into chronological order. A. Two suspects are taken in, and each provides a blood sample. B. DNA is extracted from all blood samples, then amplified using PCR. C. DNA samples are run through gel electrophoresis. D. The suspect whose DNA sample matches the crime scene sample GOES TO JAIL! E. A crime is committed, and a blood sample left at the site is collected for evidence. F. DNA samples are cut using restriction enzymes, which elucidate single nucleotide polymorphisms. G. Restriction fragment length polymorphism allows for analysis of differing ladder patterns of DNA. 1. 2. 3. 4. 5. 6. 7. 35 Use your special powers to solve this case—raise the dead, empathize with the killer, whatever it takes. SCIENCE DEMIDRILLS | 75 4.08 MATCHING You’ve given it a Nobel effort. Last exercise! Match the letter of the scientist on the left with their Nobel Prize-winning contribution to science on the right. Each letter will be used only once. a. Albrecht Kossel _____ 1. the molecular structure of DNA b. Abel, Smith, and Nathans _____ 2. discovered restriction enzymes c. Frederic Sanger _____ 3. catalytic properties of RNA d. Alfred Hershey _____ 4. the nature of chemical bonds (including the molecular modeling technique) e. Roger Kornberg _____ 5. developed PCR f. Thomas Hunt Morgan _____ 6. ABO blood grouping g. Karl Landsteiner _____ 7. chromosomal inheritance and mutation model h. (Arthur) Kornberg and Ochoa _____ 8. identified the nitrogenous bases i. Watson and Crick j. Cech and Altman _____ 9. discovered biosynthetic pathway of RNA and DNA _____ 10. DNA transcription into mRNA k. Kary Mullis _____ 11. DNA sequencing technique l. Linus Pauling _____ 12. importance of DNA in genetic replication SCIENCE DEMIDRILLS | 76 About the Author Mike Lew was really into science in high school. He was an Intel Science Talent Search Finalist and worked in a genetics lab for three years. But then he went to Yale where all the science classes were at 8 AM at the top of a hill, and all the theater classes were at 2 PM in the middle of campus. Now he’s a professional playwright! Mike’s plays include the comedies Bike America and microcrisis, and the short plays In Paris You Will Find Many Baguettes But Only One True Love, Roanoke, and Moustache Guys. He’s also a resident writer for Blue Man Group. Check out his website at www.mikelew.com. Anything Demi-related is semi-dedicated to the Academic Decathlon team at La Jolla High. About the Illustrator Janet Sung is an illustrator studying for her BFA at the New School for Design in New York. Although her main hobbies are drawing and painting, she also enjoys knitting, baking, and clipping coupons like an old lady. She also likes to listen to hip-hop and pet kittens. Her short-term aspirations are to learn how to swim, to start a web-comic series, and to learn how to draw with both hands. Check out more of her work at www.janetsungart.com. SCIENCE DEMIDRILLS | 77 Answer Key SECTION I (CELLULAR REPRODUCTION) 1.01 FLOW CHART 1. Aristotle 2. Hartsoeker 3. Hippocrates 4. Kolreuter 5. Darwin 6. Wallace 7. Mendel 8. Flemming 9. Strasburger and Beneden 1.02 FALSE 1. “division” | “thread” 2. Species … Species | Animals… Animals 3. 4. 5. 6. 7. 8. 1.03 EXCLUSIONS Alfred Sturtevant, Thomas Hunt Morgan, Carl Correns Archibald Garrod, Sewall Wright, R.A. Fisher, J.B.S. Haldane Hugo de Vries, Erich von Tzchrmak, Estella Elinor Carothers Walter Sutton, Nettie Stevens, Theodor Boveri Reginald Punnett, William Bateson, Alfred Russel Wallace Euripides | Plato pangenomics | pangenesis chromosomes | genes soldier | substitute teacher 10,000 | 30,000 reproach |admiration Carl Correns – All three are geneticists, but Carl Correns was working with plants whereas Morgan and Sturtevant were working in animals Archibald Garrod – Garrod was known for first describing a genetic disease, whereas all the rest were known for the “modern synthesis” of the theory of evolution Estella Elinor Carothers – Hugo de Vries and Erich von Tschermak rediscovered Mendel in 1900 (along with Carl Correns), whereas Carothers’ work was in proving that chromosomes are independently inherited (after Mendel’s ideas were already popularized). Nettie Stevens – Stevens discovered the difference of sex chromosomes in males and females (along with Edmund Wilson). Meanwhile, Walter Sutton and Theodor Boveri were known for proving that chromosomes separate during mitosis in a manner consistent with Mendel’s observation on trait inheritance in plants. Alfred Russel Wallace – Wallace was a naturalist and a contemporary of Darwin’s. The other two, who lived half a century later, together noted the behavior of linked genes as well as the capacity for some genes to interact with each other (or epistasis). 1.04 GROUPING Austria: Erich von Tschermak England: William Bateson, Archibald Gerrod, J.B.S. Haldane Germany: Theodor Boveri, Carl Correns Netherlands: Hugo de Vries 1.05. TRUE OR FALSE 1. False – There are about 1.8 million identified species on the planet. 2. False – Robert Hooke was the first to coin the term “cell” and was first to observe dead cells under the microscope. Anton van Leeuwenhoek was the first to observe live cells under the microscope. 3. True 4. False – Linnaeus’ kingdom grouping excludes Domain Eubacteria and Domain Archaebacteria. USA: Nettie Stevens, Walter Sutton, Edmund Wilson, Sewell Wright Embryologists: William Bateson, Nettie Stevens, Edmund Wilson 5. 6. True False – There are about 50 trillion cells in the body, not billion. 7. False – Robert Brown was a botanist. 8. True 9. True 10. False – Ribosomes aren’t illustrative of endosymbiosis, just mitochondria and chloroplasts. SCIENCE DEMIDRILLS | 78 1.06. LABEL IT! 1.07 EITHER OR 1. (PHOSPHOLIPIDS, CHITIN) 2. (NUCLEUS, CELL WALL) 3. (BIGGER, SMALLER) 4. (CILIA, FLAGELLA). 5. (RIBONUCLEIC ACID, DEOXYRIBONUCLEIC ACID) 1.08 MATCHING 1. d 2. h 3. f 1.09 LABEL IT! 4. 5. 6. k i a 6. 7. 8. 9. 10. (KINGDOMS, DOMAINS) (ARCHAEBACTERIA, EUBACTERIA) (CHLOROPLASTS, CHLOROPHYLL). (CHAINS, CONCENTRIC BALLS) (LYSOSOMES AND ENDOPLASMIC RETICULUM, CELL WALLS AND RIBOSOMES) 7. 8. 9. c g b 10. j 11. e SCIENCE DEMIDRILLS | 79 1.10 FILL IN THE BLANK 1. endocytosis, phagocytosis, pinocytosis 2. rough endoplasmic reticulum, ribosomes 3. 4. 5. 6. nucleolus smooth endoplasmic reticulum lysosomes, autophagy endosymbiosis, mitochondria 7. 8. 9. 10. microfilaments microtubules vacuole, centrioles intermediate filaments 1.11 ANALOGIES 1. FedEx : Packages:: Golgi apparatus : Proteins 2. Power plant : Electricity :: Mitochondria : ATP 3. Train : Tracks :: Cellular cargo : Microtubules 4. City : Toxic Dump :: Plant : Vacuole 5. City : Toxic Dump :: Protist : Phagosome 6. City Pool : Water :: Cell : Cytoplasm 7. Bakery : Bread :: Nucleolus : Ribosomal RNA 8. Hydroelectric dam : Water :: Chloroplast: Sunlight 9. Scaffolding : Building :: Intermediate filaments: Organelles 10. Recycling center : Tin cans :: Lysosome : Old cell parts in animals 1.12 EXCLUSIONS spindle fibers, ribosomes, centromeres, sister chromatids mitochondria, cilia, plasma membrane, flagella ribosomes – Unlike all the other listed structures, ribosomes aren’t specifically involved in cell division mitochondria – With the exception of the mitochondria, all these cell parts are located on the exterior of the cell Translation – With the exception of translation, microfilaments play a role in all the functions listed here. Circular double-stranded DNA pieces – Plasmids, or circular double-stranded DNA pieces, are not one of the distinct structures in a eukaryotic cell. pinocytosis, amoeboid movement, phagocytosis, translation internal membrane-bound structures, circular double-stranded DNA pieces, outer selective barrier, fluid-filled space anchoring devices, energy sources, enzymes, transporters, recognition molecules Energy source - Plasma membrane proteins do not function as an energy source, but serve all other functions listed. 1.13 COMPARISONS 1. E 2. P 3. E 4. P 5. 6. 7. 8. P E E P 9. P 10. E 1.14 MATCHING 1. h 2. g 3. f 4. b 5. 6. 7. 8. l k a i 9. 10. 11. 12. c j d e 1.15 TRUE OR FALSE 1. True 2. False – Vesicles are membrane-bound structures, although ribosomes and cytoskeletal elements are not. 3. True 4. False – Free ribosomes in the cytoplasm manufacture cytosolic proteins, while ribosomes attached to rough ER manufacture the membrane proteins. 5. False – In addition to the rough and smooth ER, nuclear envelope, and Golgi apparatus, the endomembrane system also includes transport vesicles. 6. False –Transcription consists of the manufacture of RNA from a DNA template, and translation refers to the manufacture of proteins from an RNA template. 7. True 8. False – The lipid bilayer that forms the plasma membrane is comprised of phospholipids with one phosphate “head” and two fatty acid “tails.” 9. False – There are approximately 260 cell types in the human body. 10. False – Mitochondria and chloroplasts show evidence of having evolved through endosymbiosis, but not ribosomes. SCIENCE DEMIDRILLS | 80 1.16 FALSE 1. g phase | interphase 2. chromosome | circular DNA piece 3. 24 hours | 20 minutes 1.17 FILL IN THE BLANK 1. S phase, sister chromatids 2. anaphase 3. kinetochore, centromere 4. MTOC 4. 5. 6. chloroplasts | cell walls single-celled | multicellular half a day | one day 7. 8. to split | to move mitosis | interphase 5. 6. 7. metaphase G1 phase, G2 phase prophase, nuclear envelope, vesicles 8. telophase 9. cytokinesis, cleavage 10. vesicles, cell plate 1.18 CHARTING Prophase Metaphase Anaphase Telophase Description √ Nucleoli are reassembled. rRNA synthesis stops. All chromosomes are now aligned. Sister chromatids become individual chromosomes. Spindle fibers and centrosomes disintegrate. Kinetochore microtubules drag sister chromatids to the middle. The proteins that bind sister chromatids become inactivated. It happens directly before cytokinesis. The kinetochore forms and spindle fibers attach to it. The nuclear envelope disintegrates. Centrosomes move to the opposite poles of the cell. The kinetochore microtubules shorten and pull chromosomes apart. √ √ √ √ √ √ √ √ √ √ √ 1.19 EITHER OR 1. (OOGONIA, SPERMATOGONIA) 2. (FORTY-SIX, TWENTYTHREE) 3. (GENETIC DIVERSITY, NATURAL SELECTION) 4. 5. 6. 7. (FUNGI, PROTISTS). (SEX, PUBERTY) (ASEXUAL TO SEXUAL, SEXUAL TO ASEXUAL) (SOMATIC CELLS, GAMETES) 8. 9. (FORTY-SIX, NINTEY-TWO) (FERTILIZATION, OOGENESIS) 10. (TWO BILLION, TWO TRILLION) 1.20 DEFINITIONS Prophase I Metaphase I Anaphase I Telophase I Prophase II Metaphase II Anaphase II Telophase II Homologous chromosomes pair up into tetrads and crossing over occurs. The nucleoli and nuclear envelope disappear, and spindle fibers interact with the tetrads. Tetrads line up at the metaphase plate and microtubules attach to the kinetochore of each homologous chromosome. Homologous chromosomes separate. The nuclear envelope briefly reappears and the cells split, resulting in two haploid cells. The nuclear envelope disappears and spindle fibers interact with sister chromatids. The sister chromatids are aligned at the metaphase plate. Sister chromatids split, yielding two sets of chromosomes. The nuclear envelope reforms and the cells split, resulting in four haploid gametes. 1.21 COMPARISONS 1. Me 2. Mi 3. Me 4. Mi 5. 6. 7. 8. Mi Me Mi Mi 9. Me 10. Me 1.22 BY THE NUMBERS 1. 2, 4 2. 5 3. 6 4. 23, 46 5. 6. 7. 8. 60 260 22,000 1 million, 50 million 9. 3.1 billion 10. 50 trillion 11. 64 trillion SCIENCE DEMIDRILLS | 81 1.23 TRUE OR FALSE 1. False – Stem cells are defined as those cells that can divide indefinitely and that can be induced to become one of numerous (though not necessarily all) types of cells. 2. True 3. False – Stem cells in reproductive organs are said to be multipotent. 4. True 5. True 6. False – The “ultimate source” of genetic variation is mutation. 7. False – The independent assortment of chromosomes allows for increased genetic variation during metaphase I of meiosis. 8. False – Crossing over refers to traits on a chromosome swapping places between the father and mother’s sides. 9. True 10. True 1.24 GROUPING Dividing: uterine endometrial cells, skin cells, intestinal epithelial cells Non-Dividing: lens cells in the eye, nerve cells in the brain, muscle cells in the heart, hair cells in the ear Reproductively Dormant: embryo in a seed plant, liver cells prior to wound healing 1.25 LABEL IT! SCIENCE DEMIDRILLS | 82 S EC T I O N II ( T HE P A TT E RN OF IN H E RI T A NC E ) 2.01 TWO TRUTHS AND A LIE failed the teacher certificate exam twice 1. Gregor studied at the University of Brno Mendel… grew up on a farm 2. Pea plants were are easy to pollinate ideal for Mendel’s have easily identifiable traits studies because are always true-breeding they… 3. The theory of explains Mendel’s observations in pea plants did not strictly fit with all of Darwin’s data blending holds that offspring receive a blend of the mother and father’s traits inheritance… 4. The traits plant height Mendel monitored flower size included…. seed color 5. Mendel’s cell theory scientific training Darwinian evolution botany included… 6. Some of the limits Mendel crossing plants that differed by only one trait at a time following just 7 traits out of a possible 34 placed on his experiment terminating the experiment after just 3 generations of plants included… included the study of 50,000 plants 7. Mendel’s took place between 1854-1865 experiments… incorporated statistical analysis 2.02 DRAW A THING! 2.03 MATCHING 1. k 2. f 3. l 4. j 5. 6. 7. 8. e a d h 9. 10. 11. 12. c b g i 2.04 FLOW CHART 1. autosomes 2. homologous 3. alleles 4. 5. 6. homozygous dominant heterozygous homozygous recessive 7. 8. dominant recessive SCIENCE DEMIDRILLS | 83 2.05 MATH BREAK 1. 1/2 x 1/2 = 1/4 6. 2/10 + 5/10 = 7/10 2. 1/2 x 1/2 x 1/2 = 1/8 7. 3/4 x 2/3 x 1/2 = 6/24 (or 1/4) 3. 1/6 x 1/6 = 1/36 8. (1/2 x 1/2) x (1/2 x 1/2) = 1/16 4. 1/2 x 1/2 = 1/4 9. 13/52 x 13/51 = 169/2652 5. 13/52 + 13/52 = 26/52 (or 1/2) 10. 2 (1/6 x 1/6) + 2 (1/6 x 1/6) + 2 (1/6 x 1/6) = 6/36, or 1/6. Note: Your way of arriving at 1/6 may differ, but the included solution accounts for two different ways of arriving at a sum of 6 + 1, or 2 + 5, or 3 + 4 (and their attendant probabilities). 2.06 DRAW A THING MENDELIAN GENETICS P: + F1 BLENDING INHERITANCE P: + F1 F2 F2 Note: for blending inheritance another acceptable answer would be for all spaces. 2.07 MATH BREAK 1. (X + X) x (X + x) = XX + XX + Xx + Xx. All will be X-men. 2. (v + v) x (V + v) = vV + vV + vv + vv. 1/2 will have verve and 1/2 will be insipid. 3. 12/16, or 3/4 will be emo rockers Parents SW SW Sw Sw SW SSWW SSWW SSWw SSWw Sw SSWw SSWw SSww SSww sW SsWW SsWW SsWw SsWw sw SsWw SsWw Ssww Ssww 4. 0 will be like Professor Snape (ssww). 4/16, or 1/4 will be like Moaning Myrtle (SSww or Ssww). Parents SW SW Sw Sw SW SSWW SSWW SSWw SSWw Sw SSWw SSWw SSww SSww sW SsWW SsWW SsWw SsWw sw SsWw SsWw Ssww Ssww 5. 6. 7. 8. For a cross of two heterozygous individuals, we expect a 3:1 ratio for the dominant trait. So in a litter of 120, we would expect 90 to be adorable. For a cross of two heterozygous individuals, we expect a 9:3:3:1 ratio. If adorableness is dominant and cuddliness is recessive, we expect 3/16 to turn out with that phenotype. 3/16 x 120 = 22.5, so 22-23 should be both adorable and cuddly. 52:49 is approximately a 1:1 (or 2:2) ratio, which is what we would expect to see from parents where one is heterozygous (Bb) and the other is homozygous recessive (bb). See table below. Bb x BB: 100% dom bb x Bb: 2:2 dom/rec Bb x Bb: 3:1 dom/rec BB x BB: 100% dom Bb x bb: 2:2 dom/rec BB x Bb: 100% dom bb x bb: 100% rec BB x bb: 100% dom bb x BB: 100% dom If all offspring show the dominant trait, the possible combination of genotypes for the parents are (BB x Bb), (BB x BB), or (BB x bb). See table above. SCIENCE DEMIDRILLS | 84 2.08 CHARTING Didn’t Know Used Created Description √ law of dominance binomial theorem consideration of sample size law of segregation gene-protein interactivity product rule of probability alleles are variable versions of genes law of independent assortment linked genes meiosis codominance certain “factors,” or alleles, control trait inheritance scientific method √ √ √ √ √ √ √ √ √ √ √ √ 2.09 TRUE OR FALSE 1. False – Mendel’s publication was called Experiments on Plant Hybridization 2. True 3. False – For any of our genes, there are two or more possible forms. 4. False – Mendel tracked a maximum of three traits at a time. 5. True 6. False – By the end of his life, Mendel remained convinced of the significance of his findings. 7. True 8. True 9. True 10. False – Hugo de Vries borrowed from Mendel’s research and acknowledged it in his own publication. 2.10 GROUPING Hugo de Vries: published in 1900, studied mutation in evolution, confirmed Mendel’s theories, Dutch Carl Erich Correns: published in 1900, German, confirmed Mendel’s theories, studied extra-chromosomal factors in phenotype Erich von Tschermak-Seysenegg: had a grandfather who taught Mendel, published in 1900, confirmed Mendel’s theories, Austrian, confirmed 3:1 ratio of inheritance 2.11 FILL IN THE BLANK 1. pedigree 2. gene 3. phenotype, survival 4. Human Genome Project, genetic, inherited, environmental stresses 5. screening 6. heterozygous, carrier 7. homozygous recessive 8. nucleotides, amino acids 9. coding region 10. single-gene controlled 2.12 TWO TRUTHS AND A LIE 1. was the first to describe a sex-linked disease (was the first to describe a disease linked to genetics) 2. the result of a non-metabolized lipid complex (the result of a non-metabolized amino acid) 3. pancreas (kidneys) 4. is the most common deadly inherited disorder (is the most common deadly inherited disorder affecting Caucasians in the US) 5. develop fatty deposits on the digestive lining (develop thick, sticky mucous on the digestive lining) 6. affects one in 300 African-Americans (affects one in 400 African-Americans) 7. have misshapen white blood cells (have misshapen red blood cells) 8. affects one in 3,500 Sephardic Jews (affects one in 3,500 Ashkenazi Jews) SCIENCE DEMIDRILLS | 85 2.13 DRAW A THING! See tables below with relevant phenotypes in bold. The first set of parents will yield a higher ratio of furry, saw-toothed offspring (1/2 of all offspring) as compared to the second set of parents (1/4 of all offspring). FB Fb Fb fb Fb FFBb FFBb FfBb FFBb Fb FFbb FFbb Ffbb FFbb fB FfBb FfBb ffBb FfBb fb Ffbb Ffbb Ffbb Ffbb FB Fb fB fb fb FfBb Ffbb ffBb ffbb fb FfBb Ffbb ffBb ffbb fb FfBb Ffbb ffBb ffbb fb FfBb Ffbb ffBb ffbb 2.14 FALSE 1. autosomal recessive | autosomal dominant 2. codominance | incomplete dominance 3. functioning allele | defective allele 4. 5. 6. of either 200 or 800 | ranging from 200 to 800 synthesizing it de novo in cells | acquiring it in the diet bloodstream | liver 2.15 PLAY DOCTOR Mother was AA and father was BB. Anti-A and Anti-B antibodies both present in serum. Blood Type: O No antigens present on red blood cell. Blood Type: O Blood Type: AB Can receive blood from type B and O patients. Mother was AO and father was AA. Blood Type: A Blood Type: B 2.16 EITHER, OR 1. (GLYCOPROTEIN, T-RECEPTOR) 2. (AGGLUTINATION, APOPTOSIS) 3. (ANTIBODIES, ANTIGENS) 4. (ANTI-A, ANTI-B) 5. (AB, O) 6. (WAS, WASN’T) 7. (FOUR, EIGHT) 8. (COMPLETE DOMINANCE, CO-DOMINANCE) 9. (RH-, RH+) 10. (ANTIBIOTICS, ANTIBODIES) 7. 8. 9. enzymes | steroids in arteries | on the cell surface copies | mutations SCIENCE DEMIDRILLS | 86 2.17 COMPARISON 1. Po 2. Pl 3. Po 4. Pl 5. 6. 7. 8. 2.18 COMMONALITIES color blindness and gender, sweet pea flower color and grain shape, fruit fly gender and eye color William Bateson, Reginald Punnett, and Edith Rebecca Saunders Breeding flies in the dark, identifying more than two dozen mutant genes, subjecting flies to X-ray radiation, and winning the Nobel Prize Po Po Pl Pl 9. Po 10. Pl These are all examples of linked genes. All are British scientists who discovered linked genes in pea plants. These are all things that Thomas Morgan did. 9:3:3:1, 15.6:1.0:1.4:4.5, 782:1011:2459:0 These are all examples of phenotypic ratios from different dihybrid crosses (classic Mendelian, Bateson/Punnett/Saunders’ linked genes experiment, and Morgan’s sex-linked genes experiment. Genes on chromosomes are linear, recombinant percentages correlate with gene distance, linkage mapping of Drosophila These are all insights and achievements that Alfred Sturtevant accomplished. 2.19 PLAY DOCTOR 1. autosomal 2. recessive 3. 50% 2.20 FLOW CHART! 1. XX 2. XY 3. Y 4. 5. 6. Sex Reversal Y ovaries male 7. 8. 2.21 FILL IN THE BLANK 1. Y chromosome, mitochondria 2. sperm, oocyte 3. circular, energy 4. pedigree 5. 6. 7. 8. karyotyping, fetal circulation uterus chorionic villus sampling, invasive 9. amniocentesis, membrane 10. in utero female testis SCIENCE DEMIDRILLS | 87 SECTION III (MOLECULAR GENETICS) 3.01 FLOW CHART 1. descent with modification 2. more offspring 3. naturally selected 4. large 5. mutations 6. 7. 8. 9. 10. sympatric migration allopatric random Hardy-Weinberg 11. 12. 13. 14. 3.02 MATCHING 1. e 2. j 3. i 4. h 5. 6. 7. 8. f b a c 9. g 10. d 11. k 3.03 EXCLUSIONS uracil, adenine, cytosine, guanine, thymine cytosine, thymine, uracil, guanine sulfur, nitrogenous base, sugar, phosphate injecting mice with S-strain pneumonia, heating S-strain pneumonia, combining S-strain and Rstrain pneumonia in mice, transforming pneumonia strains in a test tube identifying deoxyribose as part of nucleic acids, determining the molecular components of nucleic acids, identifying the pairing of A-T and G-C, proposing a tetranucleotide hypothesis mutation independent assortment microevolution macroevolution Uracil – all are nitrogenous bases, but uracil is in RNA whereas all the others are in DNA Guanine – all of these nitrogenous bases have a single-ring structure, but guanine has a double-ring structure Sulfur – all are components of a mononucleotide, except for sulfur which is a component of proteins Transforming pneumonia strains in a test tube – all are experiments that Frederick Griffith performed to arrive at his “transforming principle,” except for performing these tests in a test tube rather than in mice (which Dawson and Sia later did) identifying the pairing of A-T and G-C – all are innovations that Phoebus Levene arrived at, except for the pairing of A-T and G-C (which Chargaff arrived at to disprove the tetranucleotide hypothesis) 3.04 FALSE 1. streptococcus | pneumococcus 2. virulent | non-virulent 3. increased | decreased 4. protein | DNA 5. could | could not 6. disprove | prove 7. bacterium that infects viruses | virus that infects bacteria 8. the same |different 9. A-G, T-C |A-T, G-C 3.05 DEFINITIONS Centrifugation Paper chromatography X-ray Crystallography Molecular Model Building Centrifugation is the process of spinning a lab sample around a central axis at high speed, in order to separate the components based on size, density, or weight. Hershey and Chase used centrifugation to separate radioactively-labeled bacteriophages and bacteria, in order to prove that the bacteriophages were inserting DNA into the bacteria (and not protein). Paper chromatography is a procedure that uses the chemical properties of a substance (or substances) to separate and isolate that substance (or substances) out from a mixture, and onto a piece of paper. Chargaff used paper chromatography to isolate the molecules in prokaryotic and eukaryotic DNA, comparing the proportion of nucleotides. X-ray crystallography is a technique of bombarding a molecule with X-rays in order to create a shadow image of the molecule, thereby providing information on the molecule’s size and shape, and the spatial relationship of the molecule’s constituent parts. Rosalind Franklin used X-ray crystallography to determine the doublestranded shape of DNA, and the locations of the sugar, phosphate, and nitrogenous base components. Nobel Prize winning scientist Linus Pauling developed the technique of molecular model building in order to visualize the physical shape and composition of molecules, using standardized components (such as balls and sticks to represent the atoms and its bonds). James Watson and Francis Crick used molecular model building in order to propose the double helix structure of DNA. SCIENCE DEMIDRILLS | 88 3.06 BY THE NUMBERS 1. 1, 1 2. 3 3. 13, 14, 15 4. 20 5. 6. 7. 8. 20 64 98 AUG 9. UGG 10. UAA, UAG, UGA 3.07 ANALOGIES 1. bottle opener: bottle :: helicase : DNA 2. replication fork : DNA replication :: insertion point : surgery 3. primer : DNA :: starter : sourdough bread 4. spell check : MS Word :: nuclease : DNA 5. track layer : railway tracks :: primase : RNA primer 6. crane : skyscraper :: DNA polymerase : daughter strand 7. glue gun : rhinestones :: DNA ligase : phosphate 8. tortoise : hare :: lagging strand : leading strand 3.08 TRUE OR FALSE 1. True 2. False – Mutation is the primary force behind microevolution, and paired with natural selection can lead to macroevolution 3. True 4. False – Sickle cell anemia results from a point mutation in hemoglobin. 5. False – Sickle cell anemia is a recessive trait, resulting from both parents having the mutation. 6. True 7. True 8. False – Frameshifts primarily occur due to additions or deletions of a nucleotide. 9. True 10. True 3.09 LABEL IT! mRNA sequence: AUG CUU ACU AAU AGU GGU UGG UAA protein sequence: methionine/start leucine threonine asparagine serine glycine tryptophan stop tRNA anticodons: UAC GAA UGA UUA UCA CCA ACC AUU 3.10 CHARTING mRNA tRNA rRNA Description Roger Kornberg discovered how DNA is transcribed into this form of RNA Most likely to be found in double-stranded form Carries information in an anticodon sequence Known to forms a complex with dozens of proteins Carries information in a codon sequence Pairs with and carries specific amino acids Helps to hold the other RNA forms in the correct position It is transcribed directly from a DNA gene template Made not just in the nucleus but in the nucleolus Most directly involved with assembling and synthesizing the protein √ √ √ √ √ √ √ √ √ √ 3.11 FILL IN THE BLANK 1. initiation, elongation, termination 2. transcription, mRNA 3. cap, poly A tail 4. exon 3.12 DEFINITIONS antibody actin and myosin nuclear matrix proteins insulin reverse 5. 6. 7. intron translation, tRNA large ribosomal subunit, small ribosomal subunit defends the cell from invaders contraction, movement supports cell structure (i.e. cytoskeleton) hormone (body signal/messenger) Gene replication and expression 8. P site 9. A site 10. disulfide bridge SCIENCE DEMIDRILLS | 89 transcriptase, ligase, or helicase aquaporin, calcium channels receptor for a neurotransmitter Transporter across cellular membrane cell-to-cell communication 3.13 FALSE 1. discarded | not discarded 2. excretory | enzymatic 3. self-ligating | self-splicing 4. 5. 6. protein world | RNA world few hundred | few dozen mRNA | double-stranded RNAs 7. 8. 9. ester groups | methyl groups amino acids |energy catalytic | messenger 5. 6. 7. 8. B C I E 9. F 10. H 3.14 PLAY DOCTOR 1. Werner Aber 2. Endonuclease R 3. Daniel Nathans 4. EcoR1 and EcoRV 3.15 ORDER IT! 1. D 2. G 3. A 4. J 3.16 TRUE OR FALSE 1. True 2. True 3. False – Animal versions of insulin are slightly genetically different from the human version. 4. False – Insulin is a pancreatic hormone that modulates sugar intake in cells. 5. False – Type II diabetes patients do not respond to insulin, whereas Type I patients do not manufacture it. 6. True 7. True 8. False – This technology can also be applied to produce erythropoietin for anemia treatment. 9. True 10. False – Plasmid technology allows for mass-production of protein by taking advantage of the fact that bacteria divide every 20 minutes. 3.17 TWO TRUTHS AND A LIE 1. cannot be applied to paternity suits (can be applied to paternity suits) 2. a chamber filled with water (a chamber filled with buffer solution) 3. largely results from frameshift mutations (largely results from point mutations) 4. acts as a base (acts as an acid) 5. DNA samples must be amplified in plasmids (DNA samples must be amplified by PCR) 6. larger samples travel faster than smaller ones (smaller samples travel faster than larger ones) 7. are only 1% different (are only 0.1% different) 8. bone marrow (blood, sperm, or fabrics) 3.18 EITHER, OR 1. (COMMERCIAL, MEDICINAL) 2. (PIGEON, HAWK) 3. (10,000, 20,000) 4. 5. 6. (USING FERTILIZER, GRAFTING) (NUCLEUS, GERMLINE) (RETROVIRUS, PROTOVIRUS) 3.19 FLOW CHART 1-5. diet, aging, development, chemicals, pharmaceuticals 6. methyl 7. phosphate-sugar 8. transcription factors 9. promoter 3.20 MATCHING 7. 8. (PLASMID, VECTOR) (PRONUCLEUS, PROTONUCLEUS) 9. (STEM, OOCYTE) 10. (INCREASE, REDUCE) 10. epigenetic factors 11. histones 12. chromosomes 13-16. mental disorders, diabetes, autoimmune disease, cancer SCIENCE DEMIDRILLS | 90 1. 2. 3. 4. h c h g 3.21 BY THE NUMBERS 1. 2 2. 5 3. 50 4. 90 5. 6. 7. 8. b e a, f, i d 9. c 10. d 5. 6. 7. 8. 99.9 200 1990, 2003 3000 9. 10. 11. 12. SECTION IV 4.01 TIMELINE 1665 – Robert Hooke describes cells 1839 – Schleiden, Schwann, and Virchow develop the cell theory 1859 – Darwin publishes On the Origin of Species 1865-66 – Mendel publishes Experiments on Plant Hybridization 1908 – birth of the Hardy-Weinberg Theorem 1910-11 – Thomas Hunt Morgan proposes chromosomal theory of inheritance 1913 – Alfred Sturtevant creates first linkage map 1937 – Theodosius Dobhansky merges genetics and evolutionary bio 1942 – Ernst Mayr arrives at biological species concept 1950 – Birth of the Chargaff rule 1951 – Rosaland Franklin X-ray diffraction of DNA 1953 – Watson and Crick determine structure of DNA 1953 – the Miller-Urey experiment 1985 – Kary Mullis creates PCR 2003 – Human Genome Project completed 4.02 LABEL IT! 3000 22,500 1.4 million 3 billion SCIENCE DEMIDRILLS | 91 4.03 CHARTING Mitosis Meiosis Transcription Translation √ Results in the creation of four daughter cells Results in the creation of RNA Results in the creation of two identical daughter cells Results in the creation of a protein Requires two cycles to complete Consists of four phases Includes crossing-over Involves pairing of codons and anticodons U is substituted for T occurs inside the nucleus occurs in the cytoplasm or on the rough ER process for perfectly duplicating DNA √ √ √ √ √ √ √ √ √ √ √ 4.04 FILL IN THE BLANK 1. sexual reproduction 2. meiosis, crossing over 3. independent assortment 4. complete dominance 5. 6. 7. Description incomplete dominance, codominance pleiotropy, polygenic inheritance point mutation, missense mutation 8. 9. nonsense mutations, frameshift mutations epigenetics, DNA methylation, histone modification 4.05 PLAY DOCTOR 1. OO and OO, AO and AO, AO and BO, BO and BO, AO and OO, BO and OO 2. No, not unless both parents are OO. 3. O- only 4. affected 5. normal 6. 50%, 50% 4.06 PLAY SCIENTIST 1. B 2. C A D AACTGTACA/AGCTTAAG/AATTCTG/GATCCTGGATTCA/AGCTTG/AATTCAATG/GATCCC 4.07 ORDER IT! 1. E 2. A 3. B 4.08 MATCHING 1. i 2. b 3. j 4. l 5. k 6. g 7. f 8. a 9. h 10. e 11. c 12. d 4. 5. 6. F C G 7. D