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Download An Excel Macro to Visualise Patterns for Chosen Genes
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My Excel Macro Based on macro by Frank Millenaar (Utrecht) Selects genes of interest from Mas5 output spreadsheet Visualises expression profiles as combined: data-tables heat-maps Can adapt for different combinations of chips to give different profiles Eg a range of organs. Similar in function to GenevestigATor ….but email me if you want to have a go. [email protected] Input Unformatted NASCAffy (MAS5) output – All 23,000 genes from ATH1 chip – For each gene • • • • • • • SpotID Probe Name Gene Name Description Process URL For each array – Signal value – Detection Call – Detection P Value • Each replicate chip is separate (3) columns – IE to much data for a human mind to see patterns! List of genes of interest output Data for our chosen genes only Can use different chip sets – e.g. organs – e.g. treatments genes Replicate chips can be meaned • Gene Name • For each chip – Signal value chips For each gene, only: Signal values colour-coded for visual impact = Heat map annotation • (Description) • (Process)