* Your assessment is very important for improving the workof artificial intelligence, which forms the content of this project
Download Diffuse Nonepidermolytic Palmoplantar Keratoderma Caused by a
Non-coding DNA wikipedia , lookup
Nutriepigenomics wikipedia , lookup
Cancer epigenetics wikipedia , lookup
Quantitative trait locus wikipedia , lookup
Gene expression programming wikipedia , lookup
Biology and consumer behaviour wikipedia , lookup
Public health genomics wikipedia , lookup
History of genetic engineering wikipedia , lookup
Epigenetics of neurodegenerative diseases wikipedia , lookup
Gene expression profiling wikipedia , lookup
Population genetics wikipedia , lookup
Genome evolution wikipedia , lookup
No-SCAR (Scarless Cas9 Assisted Recombineering) Genome Editing wikipedia , lookup
Genome (book) wikipedia , lookup
Therapeutic gene modulation wikipedia , lookup
Site-specific recombinase technology wikipedia , lookup
Neuronal ceroid lipofuscinosis wikipedia , lookup
Cell-free fetal DNA wikipedia , lookup
Saethre–Chotzen syndrome wikipedia , lookup
Oncogenomics wikipedia , lookup
Designer baby wikipedia , lookup
Helitron (biology) wikipedia , lookup
Artificial gene synthesis wikipedia , lookup
Microevolution wikipedia , lookup
Microsatellite wikipedia , lookup
OBSERVATION Diffuse Nonepidermolytic Palmoplantar Keratoderma Caused by a Recurrent Nonsense Mutation in DSG1 Hannah Keren, BSc; Reuven Bergman, MD; Mordechai Mizrachi, BSc; Yechiezkel Kashi, PhD; Eli Sprecher, MD, PhD Background: Mutations in genes coding for 2 desmo- somal proteins, desmoglein 1 and desmoplakin, have been shown to cause autosomal dominant keratoderma palmoplantaris striata. Observations: We describe a family affected with a dif- fuse nonstriated form of palmoplantar keratoderma. Histopathologic examination of skin biopsy specimens disclosed cell-cell disadhesion in the suprabasal layers of the epidermis, as previously described in keratoderma palmoplantaris striata. We therefore genotyped all family members using microsatellite markers encompassing 3 keratoderma palmoplantaris striata-associated loci. Hap- I Author Affiliations: Department of Dermatology and Laboratory of Molecular Dermatology, Rambam Medical Center, Haifa (Ms Keren, Drs Bergman, Kashi, and Sprecher, and Mr Mizrachi); Faculty of Biotechnology and Food Engineering (Ms Keren and Dr Kashi), Bruce Rappaport Faculty of Medicine (Drs Bergman and Sprecher), and Biotechnology Interdisciplinary Unit (Mr Mizrachi), Technion–Israel Institute of Technology, Haifa. Financial Disclosure: None. lotype analysis suggested linkage of the disease to 18q12.1, which harbors the DSG1 gene, encoding desmoglein 1. Mutation analysis eventually led to the identification of a causative recurrent nonsense mutation in this gene. Conclusions: Mutations in DSG1 are not exclusively associated with striated palmoplantar keratoderma. The present study illustrates the efficacy of an integrative diagnostic approach to palmoplantar keratodermas involving clinical assessment, pathologic examination, microsatellite marker screening, and mutational analysis. Arch Dermatol. 2005;141:625-628 NHERITED PALMOPLANTAR KERAtodermas (PPKs) occur in a large group of cornification disorders characterized by extensive phenotypic heterogeneity.1 The Online Mendelian Inheritance in Man (OMIM) catalogue (http://www.ncbi.nlm .nih.gov/entrez/query.fcgi?db=OMIM) mentions more than 35 genetic diseases manifesting with prominent PPK. Over the last several years, much progress has been achieved toward a better understanding of the molecular basis of these disorders. Mutations in more than 20 distinct genes have been described in various forms of PPK. Many of these genes code for structural proteins (eg, keratins) or components of the desmosomal plaque, which are all known to play an important function during keratinocyte differentiation. 1 The physiologic role of other molecules associated with the pathogenesis of PPK, such as connexins and secreted LY6/UPAR– related protein 1 (SLURP-1), is less well understood.2,3 To overcome the difficulties posed by phenotypic and genetic heterogeneity in the diagnosis of inherited PPK, a number of classification schemes have been de- (REPRINTED) ARCH DERMATOL/ VOL 141, MAY 2005 625 vised in which morphologic features are used to predict the underlying molecular defect.4 For example, the association of periodontitis and PPK is suggestive of Papillon-Lefevre syndrome caused by mutations in the cathepsin C gene,5 whereas the coexistence of PPK and deafness is suggestive of a connexin gene mutation.2 Keratosis palmoplantaris striata (KPS) is a rare autosomal dominant disorder characterized by linear hyperkeratotic streaks along the volar surface of the fingers and focal keratoderma over the soles. Nonsense and frameshift mutations in DSG1 and DSP encoding 2 desmosomal proteins, desmoglein 1 and desmoplakin, demarcate 2 KPS subtypes, type I (OMIM 148700) and type II (OMIM 125647), respectively.6,7 Recently, a frameshift mutation affecting the keratin 1 tail domain was found to underlie KPS type III (OMIM 607654) in a large kindred of British extraction.8 Keratosis palmoplantaris striata is regarded as a prototypic desmosomal genodermatosis.9 Indeed desmoglein 1 and desmoplakin are critical components of the desmosomal plaque in the upper epidermis, and frameshift mutations at the tail WWW.ARCHDERMATOL.COM Downloaded from www.archdermatol.com at ROYAL PERTH HOSPITAL, on June 12, 2005 ©2005 American Medical Association. All rights reserved. A C MUTATION ANALYSIS B Genomic DNA was PCR amplified with primer pairs covering the entire coding sequence of the DSG1 gene as well as intronexon boundaries.13 Polymerase chain reaction amplification was performed using Taq polymerase (Qiagen, Valencia, Calif) and Q solution according to the manufacturer’s instructions. Gelpurified amplicons were subjected to bidirectional sequencing using Big Dye Terminator (PE Applied Biosystems). To verify R26X, a 169–base pair PCR fragment, encompassing exon 2, was PCR amplified and digested with BsiYI endonuclease. D RESULTS CLINICAL FINDINGS Figure 1. Clinical and pathological features. A, Diffuse thickening and fissuring of the palmar skin and volar surface of the fingers. B, Plantar keratoderma involving weight-bearing areas. C, A skin biopsy specimen from the patient’s palmar skin demonstrates marked orthohyperkeratosis and papillomatosis (hematoxylin-eosin, original magnification ⫻25). D, Higher magnification demonstrates widening of the intercellular spaces and disadhesion of keratinocytes in the spinous and granular cell layers (hematoxylin-eosin, original magnification ⫻400). domain of keratin 1 have been shown to affect the function of the desmosomal plaque during cornification.10 Thus, striated hyperkeratosis, as opposed to diffuse hyperkeratosis, is considered to be predictive of mutations in genes coding for components of the desmosomal plaque. In this article, we present the unusual case of a family affected by a diffuse nonepidermolytic form of PPK caused by a recurrent mutation in DSG1. METHODS PATIENTS We obtained skin biopsy and blood samples after receiving informed and written consent from each participant according to a protocol reviewed and approved by the local Helsinki Committee and by the Israeli Ministry of Health. Skin biopsy specimens were processed for regular histologic analysis as previously described.11 Blood was drawn from each individual (15 mL) and genomic DNA was isolated from blood samples using the salt chloroform extraction method. MICROSATELLITE ANALYSIS Ten polymorphic microsatellite markers (F13A1, D6S1564, D6S309, D6S470, D12S368, D12S83, D12S1294, D18S877, D18S1102, and D18S535) were selected from the GDB human genome database (http://www.gdb.org), spanning each of the 3 gene loci previously shown to be associated with KPS.6-8 Genotypes of all individuals for each marker locus were established by polymerase chain reaction (PCR) amplification of genomic DNA using Supertherm Taq polymerase (Eisenberg Brothers Co, Givat Schmuel, Israel). The PCR products were separated by polyacrylamide gel electrophoresis, run on an ABI 310 sequencer (PE Applied Biosystems, Foster City, Calif) for fluorescently labeled markers, or visualized using the silver staining method.12 (REPRINTED) ARCH DERMATOL/ VOL 141, MAY 2005 626 The proband was a 50-year old man of Jewish Yemenite origin. From age 3 years, he had thickening of the skin of his palms and soles accompanied by painful fissures. Three of his children displayed a milder form of keratoderma, mainly evident on the soles. His grandparents and parents were unavailable for examination or DNA sampling, but the proband indicated that his maternal grandfather, but not his mother, had reportedly been affected by a similar disease. Treatment with etretinate for several months led to partial improvement of his condition but was discontinued at the patient’s request because of excessive skin dryness. On examination, diffuse hyperkeratosis and fissuring of the volar surface of the hands and digits were observed (Figure 1A). Similar features were seen over weight-bearing areas of the soles and toes (Figure 1B). Mild onycholysis was accompanied by yellowish discoloration of most nails. Hair, teeth, mucosae, and nonpalmoplantar skin were normal. Histologic examination of a skin biopsy specimen obtained from the palmar skin revealed some papillomatosis and marked orthohyperkeratosis in the epidermis (Figure 1C). Widening of the intercellular spaces and disadhesion of keratinocytes were observed in the upper spinous and granular cell layers (Figure 1D). HAPLOTYPE ANALYSIS Since the histopathologic features observed in skin biopsy specimens from the patient resembled those previously described in KPS,6,7 we considered the possibility that a mutation in a gene previously associated with this disease might underlie the diffuse PPK displayed by the proband. To assess this possibility, we established 3 panels of microsatellite markers spanning the 3-gene loci previously shown to be associated with KPS on 18q12.1 (DSG1), 6p24 (DSP), and 12q13 (KRT1).6-8 Markers were selected based on their index of heterogeneity and short distance to each of the 3 genes. We established the genotype of each of the 7 family members at the 3 loci. Haplotype analysis revealed that all affected individuals shared a common 11.4-megabase chromosomal segment between markers D18S877 and D18S535 on 18q12.1, encompassing the DSG1 locus (Figure 2), which suggested the existence of a pathogenic mutation in this gene. WWW.ARCHDERMATOL.COM Downloaded from www.archdermatol.com at ROYAL PERTH HOSPITAL, on June 12, 2005 ©2005 American Medical Association. All rights reserved. R26X/WT 126 126 D18S877 D18S1102 94 126 130 92 90 148 146 D18S535 T G A A T T C N G A A T C C A G A A T C C A 92 146 146 D18S877 126 126 126 126 126 126 126 126 D18S1102 92 90 92 90 94 90 94 90 D18S535 146 146 146 146 148 146 148 146 126 126 94 WT/WT 90 148 146 T G A A T T C C Figure 2. Haplotype analysis of 18q12.1, which harbors the DSG1 locus. All affected individuals share a common haplotype (allele size in base pairs indicated in the red boxes) over 11.4 megabases spanning the DSG1 gene (arrows). MUTATION ANALYSIS We analyzed genomic DNA extracted from the patient’s blood lymphocytes for pathogenic mutations in DSG1. All exons and intronic boundary regions of the gene were PCR amplified and directly sequenced. A single heterozygous C→T transition at complementary DNA position 76 (starting from the ATG) was identified in all affected individuals (Figure 3). This mutation results in the substitution of a stop codon for an arginine residue at position 26 of the amino acid sequence (R26X) and has been previously described in a sporadic case of striated keratoderma.13 We developed a PCR–restriction fragment length polymorphism assay based on the fact that the mutation abolishes a restriction site for BsiYI endonuclease (Figure 4). Using this assay, we confirmed segregation of the mutation in the family. COMMENT Desmosomal cadherins, which include a number of desmocollin and desmoglein isoforms, are transmembranal proteins that play a critical role in cell-cell adhesion and are part of pivotal signal transduction pathways regulating cell growth and differentiation.14 In accordance with their pleiotropic functions, abnormal desmosomal cadherins have been linked to a growing number of inherited and acquired skin diseases.9 Desmoglein 1, a major component of the desmosome in the upper epidermal layers, is associated with the pathogenesis of at least 3 skin diseases: pemphigus foliaceus, staphylococcal scalded skin syndrome, and autosomal dominant KPS.15 In the present study, we identified a heterozygous nonsense mutation, R26X, that causes a diffuse nonstriated form of PPK. The R26X location at the start of the DSG1 coding sequence predicts loss of function of the mutant allele due to either severe truncation or, more likely, nonsense-mediated messenger RNA decay. This mutation has previously been described in a sporadic case of European ancestry affected with typical KPS.13 The variable phenotypic expression of the mutation (diffuse PPK vs KPS) in 2 cases and the reported absence of any phenotype in the mother of the proband suggest the influence of epigenetic factors such as physical trauma to the pal(REPRINTED) ARCH DERMATOL/ VOL 141, MAY 2005 627 Figure 3. Sequence mutation analysis revealed in an affected individual a heterozygous C→T transition (C76T; upper panel, arrow) resulting in the substitution of a stop codon for an arginine residue at position 26 of the amino acid sequence. The wild-type (WT) sequence (lower panel) is given for comparison. 169 bp 139 bp Figure 4. Findings of a polymerase chain reaction–restriction fragment length polymorphism assay. To confirm segregation of R26X in the family, a 169–base pair (bp) fragment encompassing DSG1 exon 2 was amplified by polymerase chain reaction and digested with BsiYI endonuclease. Since R26X abolishes a recognition site for BsiYI endonuclease, healthy individuals display a 139-bp fragment, while affected individuals display an additional undigested 169-bp fragment. moplantar skin. Interestingly, our proband denied any physical activity for the past 5 years, possibly suggesting the existence of other epigenetic or genetic modifier traits. Despite the diffuse nature of the PPK affecting our index case, histologic findings led us to focus our initial molecular analysis on genes coding for desmosomal components. It has been known for many years that, in skin biopsy specimens obtained from patients with PPK, epidermolytic changes in the upper epidermal layers very often indicate mutations in KRT9 or KRT1.16 Our data underscore the usefulness of another histopathologic clue for the diagnosis of PPK caused by mutations in genes encoding desmosomal proteins, namely widening of the intercellular spaces and disadhesion of suprabasal keratinocytes. However, these histopathologic findings cannot be considered as entirely specific or sensitive for KPS; they must be interpreted with caution because similar histologic features have been reported in other inherited desmosomal disorders,17,18 and these changes were absent in a number of typical KPS cases caused by dominant mutations in DSG1 (including a patient carrying R26X).13 Thus, to confirm our working diagnosis and restrict our subsequent mutation analysis, we developed a screening approach based on the use of 3 panels of microsatellite markWWW.ARCHDERMATOL.COM Downloaded from www.archdermatol.com at ROYAL PERTH HOSPITAL, on June 12, 2005 ©2005 American Medical Association. All rights reserved. ers and haplotype analysis. While a formal mutation analysis of all 3 genes involved in the pathogenesis of KPS would have entailed the sequencing of more than 50 amplicons, by using haplotype analysis as a screening tool, we identified DSG1 (comprising 15 exons only) as a target for subsequent mutation analysis. This integrative approach combining clinical ascertainment, pathogic examination, and candidate gene marker screening proved to be efficient and led ultimately to the discovery of the underlying genetic defect, despite the confusing phenotypic features displayed by the proband. In summary, we have identified a recurrent mutation in DSG1 that causes diffuse, and not striated, PPK. Our data show that the diagnostic challenge posed by phenotypically heterogeneous PPK can be met through the use of a comprehensive clinical, pathologic, and molecular approach. Accepted for Publication: December 21, 2004. Correspondence: Eli Sprecher, MD, PhD, Laboratory of Molecular Dermatology, Department of Dermatology, Rambam Medical Center, Haifa, Israel (e_sprecher @rambam.health.gov.il). Acknowledgment: We are grateful to all family members for their participation in our study. We thank Vered Friedman, PhD, for outstanding DNA sequencing services. REFERENCES 1. Kimyai-Asadi A, Kotcher LB, Jih MH. The molecular basis of hereditary palmoplantar keratodermas. J Am Acad Dermatol. 2002;47:327-343. 2. Richard G. Connexin gene pathology. Clin Exp Dermatol. 2003;28:397-409. 3. Chimienti F, Hogg RC, Plantard L, et al. Identification of SLURP-1 as an epidermal neuromodulator explains the clinical phenotype of Mal de Meleda. Hum Mol Genet. 2003;12:3017-3024. (REPRINTED) ARCH DERMATOL/ VOL 141, MAY 2005 628 4. Lucker GP, Van de Kerkhof PC, Steijlen PM. The hereditary palmoplantar keratoses: an updated review and classification. Br J Dermatol. 1994;131:1-14. 5. Toomes C, James J, Wood AJ, et al. Loss-of-function mutations in the cathepsin C gene result in periodontal disease and palmoplantar keratosis. Nat Genet. 1999;23:421-424. 6. Rickman L, Simrak D, Stevens HP, et al. N-terminal deletion in a desmosomal cadherin causes the autosomal dominant skin disease striate palmoplantar keratoderma. Hum Mol Genet. 1999;8:971-976. 7. Armstrong DK, McKenna KE, Purkis PE, et al. Haploinsufficiency of desmoplakin causes a striate subtype of palmoplantar keratoderma. Hum Mol Genet. 1999;8:143-148. 8. Whittock NV, Smith FJ, Wan H, et al. Frameshift mutation in the V2 domain of human keratin 1 results in striate palmoplantar keratoderma. J Invest Dermatol. 2002;118:838-844. 9. McMillan JR, Shimizu H. Desmosomes: structure and function in normal and diseased epidermis. J Dermatol. 2001;28:291-298. 10. Sprecher E, Ishida-Yamamoto A, Becker OM, et al. Evidence for novel functions of the keratin tail emerging from a mutation causing ichthyosis hystrix. J Invest Dermatol. 2001;116:511-519. 11. Petronius D, Bergman R, Ben Izhak O, Leiba R, Sprecher E. A comparative study of immunohistochemistry and electron microscopy used in the diagnosis of epidermolysis bullosa. Am J Dermatopathol. 2003;25:198-203. 12. Merril CR. Silver stains of proteins and DNA. Nature. 1990;343:779-780. 13. Hunt DM, Rickman L, Whittock NV, et al. Spectrum of dominant mutations in the desmosomal cadherin desmoglein 1, causing the skin disease striate palmoplantar keratoderma. Eur J Hum Genet. 2001;9:197-203. 14. Getsios S, Huen AC, Green KJ. Working out the strength and flexibility of desmosomes. Nat Rev Mol Cell Biol. 2004;5:271-281. 15. Whittock NV, Bower C. Targetting of desmoglein 1 in inherited and acquired skin diseases. Clin Exp Dermatol. 2003;28:410-415. 16. Terron-Kwiatkowski A, Terrinoni A, Didona B, et al. Atypical epidermolytic palmoplantar keratoderma presentation associated with a mutation in the keratin 1 gene. Br J Dermatol. 2004;150:1096-1103. 17. Sprecher E, Molho-Pessach V, Ingber A, Sagi E, Indelman M, Bergman R. Homozygous splice site mutations in PKP1 result in loss of epidermal plakophilin 1 expression and underlie ectodermal dysplasia/skin fragility syndrome in two consanguineous families. J Invest Dermatol. 2004;122:647-651. 18. Whittock NV, Wan H, Morley SM, et al. Compound heterozygosity for nonsense and mis-sense mutations in desmoplakin underlies skin fragility/woolly hair syndrome. J Invest Dermatol. 2002;118:232-238. WWW.ARCHDERMATOL.COM Downloaded from www.archdermatol.com at ROYAL PERTH HOSPITAL, on June 12, 2005 ©2005 American Medical Association. All rights reserved.