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Lecture 5 The chemical nature of the Gene CAMPBELL BIOLOGY Chapter 10: The Molecular Biology of the Gene Some elegant experiments that provided insights into fundamental concepts in genetics (1) Evidence that Genes are located on Chromosomes 1902 – McClung – a particular chromosome (X) determines sex in insects (XO = male; XX = female) 1903 – Sutton and Boveri – chromosomes behave just like the unit factors described by Mendel 1910 – Morgan – the white eye color gene of Drosophila is located on the X-chromosome - there are many other X-linked genes 1 (2) But what are Genes made of? 1869 – Meischer - he separated nuclei from cells - examined their chemical composition - extracted a phosphorus-rich polymer called nuclein - this was actually DNA 1912 – Feulgen - developed stains for detection of proteins - showed that the nucleus and chromosomes contained proteins as well as DNA (3) Problem: If chromosomes contain both DNA and proteins, which one is the genetic material (genes)? Arguments in favour of genes being made of proteins: • Proteins are sufficiently complex to store genetic information but DNA is not • Proteins - contain 20 different subunits (amino acids) and • There are many different types of proteins • DNA - contains only 4 different subunits • The complexity found in proteins was considered sufficient to specify genetic complexity 2 Arguments in favour of genes being made of DNA • All cells of a given species contain a constant amount of DNA but the types and amounts of proteins differ in different cells • The amount of DNA doubles in every cell just before it divides and an exactly equal amount is distributed to the two daughter cells • Gametes contain half the number of chromosomes and half the amount of DNA • Therefore, although DNA is a very simple molecule, it behaves in the way genetic material would be expected to behave During the 1940 s the widely accepted conclusion was: Genes are likely to be made of protein DNA merely provides a structural framework in chromosomes Conclusive experimental evidence that genes are made of DNA came from studies of: (a) bacterial transformation and (b) virus replication Bacterial Transformation 1928 Griffith Streptococcus pneumoniae: two types S strains - virulent:caused lethal pneumonia in mice - can be isolated from blood of dead mice - bacterium has a polysaccharide coat - forms large, slimy colonies on agar plates 3 R strains - non-virulent: doesn t kill mice - doesn t make a polysaccharide coat - grows as small, rough colonies on agar plates Griffith s experiments: inject mice with the different strain types observe effect on mice and analyse their blood for bacteria Strain injected Type II R Type III S killed Type III S killed Type III S + Type IIR Effect none dead all dead none dead Blood analysis no bacteria present Type III S present no bacteria present all dead Type III S present Pretty amazing idea to decide to test this last category! 4 Explanation: Bacterial Transformation 1. The killed Type IIIS did not come back to life! 2. Genetic material contained in the Type IIIS cells has leaked out and entered the living Type IIR cells 3. The genetic material has converted (or transformed) cells of the Type IIR strain into Type III S cells 4. The genetic material from the Type III S contains the information for making the polysaccharide coat required for virulence 5. Griffith didn t realise this! What is the transforming substance? Griffith s discovery of bacterial transformation provided a way of identifying what chemical substance in the bacterium contained the genetic information i.e. the genes themselves 1944 Avery, McLeod and McCarthy Proved that the transforming substance = DNA 1. Made a soluble cell extract from Type IIIS cell cultures 2. Tested the cell extract for its ability to transform Type II R into Type IIIS. Before testing for transformation 3. Treated the extract with different enzymes i.e. (a) one that destroys proteins = protease or (b) one that destroys RNA = RNAase or (c) one that destroys DNA = DNAase 5 Transformation Results Transformation of TypeII R ? A. S extract alone Transforming Substance YES ? B. S extract + protease YES NOT PROTEIN C. S extract + RNAase YES NOT RNA D. S extract + DNAase NO must be DNA Avery, McLeod and McCarthy www.visionlearning.com/library/modules/mid149/Image/VLObject-3756-080922120939.jpg 6 1953 A second experiment confirms that DNA = The Genetic material The Hershey-Chase experiment: Used a virus that infects and reproduces inside a bacterial cell = phage The virus is made of 50% DNA and 50% protein Question: which substance contains the genetic information? DNA contains phosphorus ( 32P) but no sulphur – can label the DNA with radioactive 32P Protein contains sulphur ( 35S) but no phosphorus can label protein with radioactive S Alfred Hershey and Martha Chase 7 Experiment 1: The protein coat of the phage is labelled with The DNA is not labelled. S 35 The protein coat stays on the surface of the bacterium and can be knocked off. The progeny phage contain no 35S Experiment 2: The DNA of the phage is labelled with The protein is not labelled. P 32 The phage injects its DNA into the bacterial cell. When the cells are pelleted, the 32P is in the pellet. The progeny phage contain 32P 8 Adapated from http://www.google.ie/imgres?imgurl=http://upload.wikimedia.org/wikipedia/commons/3/3e/Autorecessive.svg&imgrefurl=http:// en.wikipedia.org/wiki/Cystic_fibrosis&usg=__Dt6ThXC_Kf2la0M-qrIeB1PsDOQ=&h=1580&w=1350&sz=39&hl=en&start=1&zoom=1&tbnid=TUA8Jk8JrFTMM:&tbnh=150&tbnw=128&ei=DbtfUs7bKcWd7gblxIGIBg&prev=/search%3Fq%3Dcystic%2Bfibrosis%2Bgene%26hl%3Den-IE%26gbv%3D2%26tbm %3Disch&itbs=1&sa=X&ved=0CCoQrQMwAA 9 The CFTR protein is a channel protein that controls the flow of H2O and Cl- ions in and out of cells inside the lungs. When the CFTR protein is working correctly, as shown in Panel 1, ions freely flow in and out of the cells. However, when the CFTR protein is malfunctioning as in Panel 2, these ions cannot flow out of the cell due to a blocked channel. This causes Cystic Fibrosis, characterized by the buildup of thick mucus in the lungs. Adapted from http://upload.wikimedia.org/wikipedia/commons/3/3e/Autorecessive.svg&imgrefurl=http://en.wikipedia.org/wiki/Cystic_fibrosis&usg=__Dt6ThXC_Kf2la0MqrIeB1PsDOQ=&h=1580&w=1350&sz=39&hl=en&start=1&zoom=1&tbnid=TUA8Jk8JrF-TMM:&tbnh=150&tbnw=128&ei=DbtfUs7bKcWd7gblxIGIBg&prev=/search%3Fq%3Dcystic%2Bfibrosis%2Bgene %26hl%3Den-IE%26gbv%3D2%26tbm%3Disch&itbs=1&sa=X&ved=0CCoQrQMwAA Adapted from https://www.msu.edu/~luckie/cfsa2.gif&imgrefurl=http://www.msu.edu/~luckie/ cfarticle.html&usg=__KS1j0ZXh0WwyFP4EnATW_AKdocA=&h=310&w=341&sz=12&hl=en&start=10&zoom=1&tbnid=HpdjENGFkX08fM:&tbnh=109&tbnw =120&ei=DbtfUs7bKcWd7gblxIGIBg&prev=/search%3Fq%3Dcystic%2Bfibrosis%2Bgene%26hl%3Den-IE%26gbv%3D2%26tbm %3Disch&itbs=1&sa=X&ved=0CDwQrQMwCQ 10 A consortium of researchers from Oxford University, Imperial College London and the University of Edinburgh have been enrolling patients on a UK Cystic Fibrosis Gene Therapy Trial. The primary objective is that the study hopefully may show for the first time whether the gene therapy they have developed can improve the health of CF patients. The phase II clinical trial will involve 130 cystic fibrosis patients using an inhaler to breathe in a working copy of the cystic fibrosis gene once a month for a year. The gene is administered via a nebulizer – much like inhalers used in asthma. Patients simply inhale a fine mist of fat globules which carry the DNA for the gene wrapped up inside. Adapted from www.ox.ac.uk/images/maincolumn/14473_cf_gene_therapy_nebuliser.jpg&imgrefurl=http://www.ox.ac.uk/media/ news_stories 2012/120316.html&usg=__ZcalK7MzkyZUPsFX1oYNhjnpLNc=&h=323&w=215&sz=69&hl=en&start=6&zoom=1& tbnid=2giOlx57tkb9oM:&tbnh=118&tbnw=79&ei=orlfUtK0GK2X7Qbup4HwCg&prev=/search%3Fq%3Dcystic %2Bfibrosis%2Bgene%2Btherapy%26hl%3Den-IE%26gbv%3D2%26tbm %3Disch&itbs=1&sa=X&ved=0CDQQrQMwBQ 11