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The Chromosomal Basis of Inheritance CAMPBELL & REECE CHAPTER 15 Chromosome Theory of Inheritance 1860: Mendel 1875: stages of mitosis 1890: stages of meiosis 1902: Walter Sutton & Theodor Boveri noted parallels between Mendel’s “factors” & what chromosomes do in mitosis & meiosis Chromosome Theory of Inheritance Chromosomes & genes are present in pairs in diploid cells Homologous chromosomes separate during meiosis Fertilization restores chromosomes to 2n Chromosomes segregate & assorts independently Morgan’s Experiment provided 1st evidence that associated specific gene with specific chromosome Drosophila melanogaster (fruit flies) 100’s offspring from 1 mating new generation 2 wks 4 chromosomes (3 pair autosomes/1 pair sex chromosomes) BOZEMAN Morgan’s Experiment after months of mating & inspecting each fly Morgan finally got what he wanted: normally fruit flies have red eyes; now he had one with white eyes Morgan’s Experiment wild type: the phenotype for a character most commonly observed in natural populations symbols: w+ wild type (red eyes) any alternative is mutant phenotype symbols: w wild type (white eyes) Morgan’s Experiment mated white eyed male with a red eyed (w+) female First generation: all red eyes (red is dominant) Second generation: 3:1 BUT the ratios were different white-eyed trait showed up only in male offspring: 100% F2 females red eyes 50% F2 males white eyes/ 50% red eyes Conclusion Eye color was linked to X sex genes Gene Linkage Linked Genes: genes located near each other on same chromosome & tend to be inherited together in genetic crosses results of genetic crosses deviate from what is expected using the Law of Independent Assortment How Linkage Affects Inheritance Morgan’s Drosophila experiments: Wild-type flies have gray bodies & normal-sized wings thru breeding Morgan produced flies with black bodies & much smaller wings (vestigial wings) both characters have genes not on the X chromosome & both are recessive to the wild type He bred black vestigial wings with gray normal wing Produced dihybrids (wild type in appearance, but carried mutant gene) Crossed female dihybrid with true breeding double mutant male Expected Medelian results, but didn’t get that (9:3:3:1) Conclusion: Body color and wing size are usually inherited together in specific combinations Morgan’s Experiments with Linkage results had much higher proportion of the combinations of traits seen in P generation flies than would be expected if the 2 genes assorted independently Again, Morgan concluded that body color & wing size are usually inherited together in parental combinations because the genes for these characters are near each other on the same chromosome Genetic Recombination production of offspring with combinations of traits that differ from those found in either parent occurs with unlinked genes in simple dihybrid cross of parents heterozygous for the 2 characters phenotypes that match those of the parents called: parental types phenotypes that do not match those of parents called: recombinant types or recombinants if 50% of offspring are recombinants: 50% frequency of recombination: will see 50% if the 2 genes in testcross are on different chromosomes Cross of hybrid parents Recombination of Linked Genes back to Morgan’s flies: saw >50% (most) offspring with parental types so conclude these genes are linked What about the 17% that were recombinants? Answer: Crossing Over (1st proposed by Morgan) proteins in Prophase I orchestrate an exchange of corresponding segments of 1 maternal chromosome with its homolog Recombinant Chromosomes add to Genetic Variation many new genetic variations possible thru crossing over random fertilization then increases even further the # of variant allele combinations that can be created Mapping Distances between Genes genetic map: an ordered list of the genetic loci along a particular chromosome 1st done by Sturtevant (student of Morgan) hypothesized the % of recombinant offspring (recombination frequency) depends on the distance between genes on a chromosome assumed crossing over a random event, equally likely to occur anywhere along length of a chromosome Linkage Map Sturtevant predicted that the farther apart 2 genes are, the higher the probability that a crossover will occur between them & therefore the higher the recombination frequency. Linkage Map: genetic map based on recombination frequencies Map Unit: distances between genes with: 1 map unit = 1% recombinant frequency Observed frequency of recombination in crosses involving linked genes can have a maximum value of 50%, or the genes would be on different chromosomes Linkage Maps b-vg recombination frequency is slightly less than the sum of the b-cn and cn-vg frequencies because double the crossovers are fairly likely to occur between b and vg in matings tracking these two genes. Sex-Linked Genes: Unique Patterns of Inheritance in mammals: ova: 1 X chromosome sperm: 50% X chromosome/ 50% Y chromosome short segments of X & Y are homologous & there is opportunity for crossing over in Prophase I Other Chromosomal Systems of Sex Determination Sex-Linked Gene any gene located on either sex chromosome Gene on y chromosome required for testes development (SRY) SRY gene codes for proteins that regulate other genes very few genes on Y chromosome so very few Y-linked most related to male-ness rare example produces abnormal sperm X-Linked Genes Sex-linked genes: genes on either sex chromosome chromosome Historically referred to genes on the x chromosome ~1,100 genes many unrelated to sex X-Linked Recessive Traits terms homozygous & heterozygous lack meaning when describing X-linked genes males only have 1 copy females will have 2 copies rare, but not impossible for female to show recessive phenotype X-Linked Recessive Disorders Color-blindness 2. Duchenne Muscular Dystrophy 1. 1/3500 males in the US Weakening of muscles, loss of coordination 3. Hemophilia Absences of 1+ proteins required for blood clotting X Chromosome Inactivation in Female Mammals 1 of the 2 X’s in females becomes inactivated during embryonic development Cells of females and males have the same effective dose (one copy) of genes with loci on the x chromosome Barr body: inactive X condenses, found along inside edge of nuclear envelope selection of which X will inactivate occurs randomly & independently in each embryonic cell …. females are a mosaic of the 2 X chromosomes Barr Bodies Inactivating an X involves modification of DNA & the histone proteins bound to it (includes attachment of methyl groups, --CH3) Several genes on each X involved in inactivation process XIST gene (X-inactive specific transcript) becomes active only on the X that will become the Barr body Still being investigated for further understanding Genetic Disorders due to Chromosomal Abnormality large-scale chromosomal changes many abortion of fetus (spontaneous miscarriage) Chromosomes can be damaged: in meiosis by chemical or physical means Abnormal Chromosome # occasionally, meiotic spindle does not distribute chromosomes equally nondisjunction: an error in meiosis or mitosis in which members of a pair of homologous chromosomes or a pair of sister chromatids fail to separate properly from each other Nondisjunction in Meiosis I when any of the gametes to the right go thru fertilization zygote with abnormal # of a particular chromosome: condition called aneuploidy if 1 gamete has 0 copies of chromosome the aneuploid zygote is said to be monosomic for that chromosome if 1 gamete has 2 copies of chromosome the aneuploid zygote is said to be trisomic for that chromosome Aneuploidy Aneuploidy Mitosis will subsequently transmit the anomaly to all embryonic cells most of these zygotes will end in spontaneous abortion those that survive it has characteristic set of traits (syndrome) If nondisjunction takes place during mitosis in early embryonic development passed to large # of cells & is likely to have substantial effect on organism Polyploidy 2 or more complete sets of chromosomes in all somatic cells: 3n = triploidy 4n = tetraploidy individuals appear more normal than having 1 extra or 1 missing chromosome common in plant kingdom 3n: bananas 6n: wheat 8n: strawberries animal kingdom: few examples: fish & amphibians Alterations of Chromosome Structure breakage in chromosome can lead to 4 types of changes: 1. 2. 3. 4. deletion: chromosome fragment is lost duplication: “deleted” fragment attaches to some other chromosome inversion: fragment reattaches to original chromosome but is in reverse orientation translocation: fragment joins a nonhomologous chromosome Alterations in Chromosome Structure deletions & duplications likely to occur during meiosis sometime crossing over exchange unequal fragments If missing any # of essential genes condition is usually lethal translocations & inversions can alter phenotype because a gene’s expression can be influences by its location among neighboring genes Human Disorders due to Chromosomal Alterations Trisomy 21 (Down Syndrome) 1/700 children born in USA each have 47 chromosomes (extra 21st) characteristic facial features short stature, treatable heart defects, developmental delays, increased risk of leukemia, Alzheimer’s disease, and a lower rate of hypertension, atherosclerosis, stroke, many types of solid tumors Trisomy 21 frequency of having baby with trisomy 21 increases with age of mother <30 years old: found in 0.04% of babies 40 years old: found in 0.92% >40 risk increases every year Prenatal screening offered to women in pregnancy Aneuploidy in Sex Chromosomes less likely to be lethal than in autosomes Klinefelter Syndrome: XXY 1/500 to 1/1000 live male births phenotype: male sex organs, sterile, small testes, tall stature, +/- subnormal intelligence, +/breast enlargement XYY (Klinefelter Syndrome) 1/1000 live male births normal sexual development somewhat taller not a well-defined syndrome XXX (Trisomy X) 1/1000 live female births healthy with no unusual physical features somewhat taller than average XO (Turner’s Syndrome) 1/2500 live female births *only known viable human monosomy sterile because their sex organs do not mature given estrogen replacement to develop secondary sex characteristics normal intelligence Cri du Chat deletion in chromosome 5 severely intellectually disabled small head with unusual facial features cry that sounds like cat in distress Philadelphia Chromosome shortened chromosome 22 due to translocation of fragment with chromosome 9 during mitosis in WBC production individuals have higher incidence of CML by activating a gene that leads to uncontrolled cell cycle progression Exceptions to Standard Mendelian Inheritance Genomic Imprinting variation in phenotype depending on which parent it was inherited from most of the time it does not matter whether a particular gene was inherited from mother or father 2 – 3 dozen traits in mammals that depend on whether an allele is inherited from the male or female parent = genomic imprinting most of these genes are on autosomes Genomic Imprinting occurs during gamete formation & results in silencing a particular allele of certain genes genes imprinted differently in sperm & ova zygote expresses only 1 allele of imprinted gene: the 1 inherited from the female or male parent imprints transmitted to all somatic cells during development gamete-producing cells “erase” the imprints & the chromosomes of the developing gametes are newly imprinted according to the sex of the person making the gametes Imprinted Genes 1 of 1st identified: mouse gene for insulin growth factor 2 (Igf2) -CH3 groups added to cytosine nucleotides of 1 of allele seems to silence the allele (in some genes it activates the gene) found in small fraction of mammalian genes but most known one critical for embryonic development Inheritance of Organelle Genes extranuclear genes found in organelles: mitochondria & chloroplasts plastids found in some plants organelles reproduce themselves & transmit their genes to daughter organelle organelle genes do not display Mendelian inheritance