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The Chromosomal Basis of Inheritance CAMPBELL & REECE CHAPTER 15 Chromosome Theory of Inheritance  1860: Mendel  1875: stages of mitosis  1890: stages of meiosis  1902: Walter Sutton & Theodor Boveri noted parallels between Mendel’s “factors” & what chromosomes do in mitosis & meiosis Chromosome Theory of Inheritance  Chromosomes & genes are present in pairs in diploid cells  Homologous chromosomes separate during meiosis  Fertilization restores chromosomes to 2n  Chromosomes segregate & assorts independently Morgan’s Experiment  provided 1st evidence that associated specific gene with specific chromosome  Drosophila melanogaster (fruit flies)     100’s offspring from 1 mating new generation 2 wks 4 chromosomes (3 pair autosomes/1 pair sex chromosomes) BOZEMAN Morgan’s Experiment  after months of mating & inspecting each fly Morgan finally got what he wanted:  normally fruit flies have red eyes; now he had one with white eyes Morgan’s Experiment  wild type: the phenotype for a character most commonly observed in natural populations  symbols: w+ wild type (red eyes)  any alternative is mutant phenotype  symbols: w wild type (white eyes) Morgan’s Experiment  mated white eyed male with a red eyed (w+) female   First generation: all red eyes (red is dominant) Second generation: 3:1  BUT the ratios were different  white-eyed trait showed up only in male offspring:  100% F2 females red eyes  50% F2 males white eyes/ 50% red eyes  Conclusion  Eye color was linked to X sex genes Gene Linkage  Linked Genes: genes located near each other on same chromosome & tend to be inherited together in genetic crosses  results of genetic crosses deviate from what is expected using the Law of Independent Assortment How Linkage Affects Inheritance  Morgan’s Drosophila experiments:  Wild-type flies have gray bodies & normal-sized wings  thru breeding Morgan produced flies with black bodies & much smaller wings (vestigial wings)  both characters have genes not on the X chromosome & both are recessive to the wild type He bred black vestigial wings with gray normal wing  Produced dihybrids (wild type in appearance, but carried mutant gene)  Crossed female dihybrid with true breeding double mutant male  Expected Medelian results, but didn’t get that (9:3:3:1)  Conclusion:  Body color and wing size are usually inherited together in specific combinations  Morgan’s Experiments with Linkage  results had much higher proportion of the combinations of traits seen in P generation flies than would be expected if the 2 genes assorted independently  Again, Morgan concluded that body color & wing size are usually inherited together in parental combinations because the genes for these characters are near each other on the same chromosome Genetic Recombination  production of offspring with combinations of traits that differ from those found in either parent  occurs with unlinked genes in simple dihybrid cross of parents heterozygous for the 2 characters phenotypes that match those of the parents called: parental types  phenotypes that do not match those of parents called: recombinant types or recombinants  if 50% of offspring are recombinants: 50% frequency of recombination: will see 50% if the 2 genes in testcross are on different chromosomes  Cross of hybrid parents Recombination of Linked Genes  back to Morgan’s flies: saw >50% (most) offspring with parental types so conclude these genes are linked  What about the 17% that were recombinants?  Answer: Crossing Over (1st proposed by Morgan)  proteins in Prophase I orchestrate an exchange of corresponding segments of 1 maternal chromosome with its homolog Recombinant Chromosomes add to Genetic Variation  many new genetic variations possible thru crossing over  random fertilization then increases even further the # of variant allele combinations that can be created Mapping Distances between Genes  genetic map: an ordered list of the genetic loci along a particular chromosome  1st done by Sturtevant (student of Morgan) hypothesized the % of recombinant offspring (recombination frequency) depends on the distance between genes on a chromosome  assumed crossing over a random event, equally likely to occur anywhere along length of a chromosome  Linkage Map  Sturtevant predicted that the farther apart 2 genes are, the higher the probability that a crossover will occur between them & therefore the higher the recombination frequency.  Linkage Map: genetic map based on recombination frequencies  Map Unit: distances between genes with:  1 map unit = 1% recombinant frequency  Observed frequency of recombination in crosses involving linked genes can have a maximum value of 50%, or the genes would be on different chromosomes Linkage Maps b-vg recombination frequency is slightly less than the sum of the b-cn and cn-vg frequencies because double the crossovers are fairly likely to occur between b and vg in matings tracking these two genes. Sex-Linked Genes: Unique Patterns of Inheritance  in mammals:  ova: 1 X chromosome  sperm: 50% X chromosome/ 50% Y chromosome  short segments of X & Y are homologous & there is opportunity for crossing over in Prophase I Other Chromosomal Systems of Sex Determination Sex-Linked Gene  any gene located on either sex chromosome  Gene on y chromosome required for testes development (SRY)  SRY gene codes for proteins that regulate other genes  very few genes on Y chromosome so very few Y-linked  most related to male-ness rare example produces abnormal sperm X-Linked Genes  Sex-linked genes: genes on either sex chromosome chromosome  Historically referred to genes on the x chromosome ~1,100 genes  many unrelated to sex  X-Linked Recessive Traits  terms homozygous & heterozygous lack meaning when describing X-linked genes  males only have 1 copy  females will have 2 copies  rare, but not impossible for female to show recessive phenotype X-Linked Recessive Disorders Color-blindness 2. Duchenne Muscular Dystrophy 1.  1/3500 males in the US  Weakening of muscles, loss of coordination 3. Hemophilia  Absences of 1+ proteins required for blood clotting X Chromosome Inactivation in Female Mammals  1 of the 2 X’s in females becomes inactivated during embryonic development  Cells of females and males have the same effective dose (one copy) of genes with loci on the x chromosome  Barr body: inactive X condenses, found along inside edge of nuclear envelope  selection of which X will inactivate occurs randomly & independently in each embryonic cell …. females are a mosaic of the 2 X chromosomes Barr Bodies Inactivating an X  involves modification of DNA & the histone proteins bound to it (includes attachment of methyl groups, --CH3)  Several genes on each X involved in inactivation process XIST gene (X-inactive specific transcript) becomes active only on the X that will become the Barr body  Still being investigated for further understanding  Genetic Disorders due to Chromosomal Abnormality  large-scale chromosomal changes  many  abortion of fetus (spontaneous miscarriage)  Chromosomes can be damaged: in meiosis  by chemical or physical means  Abnormal Chromosome #  occasionally, meiotic spindle does not distribute chromosomes equally  nondisjunction: an error in meiosis or mitosis in which members of a pair of homologous chromosomes or a pair of sister chromatids fail to separate properly from each other Nondisjunction in Meiosis I  when any of the gametes to the right go thru fertilization  zygote with abnormal # of a particular chromosome: condition called aneuploidy if 1 gamete has 0 copies of chromosome the aneuploid zygote is said to be monosomic for that chromosome  if 1 gamete has 2 copies of chromosome the aneuploid zygote is said to be trisomic for that chromosome  Aneuploidy Aneuploidy  Mitosis will subsequently transmit the anomaly to all embryonic cells   most of these zygotes will end in spontaneous abortion those that survive it has characteristic set of traits (syndrome)  If nondisjunction takes place during mitosis in early embryonic development  passed to large # of cells & is likely to have substantial effect on organism Polyploidy  2 or more complete sets of chromosomes in all somatic cells: 3n = triploidy 4n = tetraploidy  individuals appear more normal than having 1 extra or 1 missing chromosome  common in plant kingdom 3n: bananas 6n: wheat 8n: strawberries  animal kingdom: few examples: fish & amphibians Alterations of Chromosome Structure  breakage in chromosome can lead to 4 types of changes: 1. 2. 3. 4. deletion: chromosome fragment is lost duplication: “deleted” fragment attaches to some other chromosome inversion: fragment reattaches to original chromosome but is in reverse orientation translocation: fragment joins a nonhomologous chromosome Alterations in Chromosome Structure  deletions & duplications likely to occur during meiosis   sometime crossing over exchange unequal fragments If missing any # of essential genes condition is usually lethal  translocations & inversions can alter phenotype because a gene’s expression can be influences by its location among neighboring genes Human Disorders due to Chromosomal Alterations  Trisomy 21 (Down Syndrome)  1/700 children born in USA  each have 47 chromosomes (extra 21st)  characteristic facial features  short stature, treatable heart defects, developmental delays, increased risk of leukemia, Alzheimer’s disease, and a lower rate of hypertension, atherosclerosis, stroke, many types of solid tumors Trisomy 21  frequency of having baby with trisomy 21 increases     with age of mother <30 years old: found in 0.04% of babies 40 years old: found in 0.92% >40 risk increases every year Prenatal screening offered to women in pregnancy Aneuploidy in Sex Chromosomes  less likely to be lethal than in autosomes  Klinefelter Syndrome: XXY  1/500 to 1/1000 live male births  phenotype: male sex organs, sterile, small testes, tall stature, +/- subnormal intelligence, +/breast enlargement  XYY (Klinefelter Syndrome)  1/1000 live male births  normal sexual development  somewhat taller  not a well-defined syndrome XXX (Trisomy X)  1/1000 live female births  healthy with no unusual physical features  somewhat taller than average XO (Turner’s Syndrome)  1/2500 live female births  *only known viable human monosomy  sterile because their sex organs do not mature  given estrogen replacement to develop secondary sex characteristics  normal intelligence Cri du Chat  deletion in chromosome 5  severely intellectually disabled  small head with unusual facial features  cry that sounds like cat in distress Philadelphia Chromosome  shortened chromosome 22 due to translocation of fragment with chromosome 9 during mitosis in WBC production  individuals have higher incidence of CML by activating a gene that leads to uncontrolled cell cycle progression Exceptions to Standard Mendelian Inheritance  Genomic Imprinting  variation in phenotype depending on which parent it was inherited from  most of the time it does not matter whether a particular gene was inherited from mother or father  2 – 3 dozen traits in mammals that depend on whether an allele is inherited from the male or female parent = genomic imprinting  most of these genes are on autosomes Genomic Imprinting  occurs during gamete formation & results in     silencing a particular allele of certain genes genes imprinted differently in sperm & ova zygote expresses only 1 allele of imprinted gene: the 1 inherited from the female or male parent imprints transmitted to all somatic cells during development gamete-producing cells “erase” the imprints & the chromosomes of the developing gametes are newly imprinted according to the sex of the person making the gametes Imprinted Genes  1 of 1st identified: mouse gene for insulin growth factor 2 (Igf2)  -CH3 groups added to cytosine nucleotides of 1 of allele seems to silence the allele (in some genes it activates the gene)  found in small fraction of mammalian genes but most known one critical for embryonic development Inheritance of Organelle Genes  extranuclear genes found in organelles: mitochondria & chloroplasts  plastids found in some plants  organelles reproduce themselves & transmit their genes to daughter organelle  organelle genes do not display Mendelian inheritance