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Transcript
Examples of Sequencing Analysis Runs we have done:
DNA EXTRACTION
DNA EXTRACTION
Cucumber Mosaic Virus
GENETIC ANALYZER
We have a 3130xl Genetic Analyzer from Applied
Biosystems. This instrument is fluorescence
based genetic analyzing system where theee
genotyping methods are based on the sizing of
fluorescently labeled DNA fragments.
PCR Product of Maize
Examples of Fragment Analysis Runs we have done:
The applied biosystems 3130xl is capable of
performing sequencing and fragment analysis of
applications like microsatellite or short Tandem
Repeats (STR), AFLP, LOH, SNP, rapid sequencing,
standard sequencing de novo sequencing and
resequencing.
The sequencer is typically set up for rapid
sequencing and fragment analysis but upon
request, we can install 50cm array for standard
sequencing (≤900bp) but this can typically give a
read of ≤1200bp.
Available data software sequencing analysis
Software v5.2, CodonCode Aligner and
Genemapper v4.0 for Fragment Analysis. The
system uses POP7 as well as POP6 but mostly
POP7 as its separation matrix.
With an instrument protocol which gives a
shorter read length and allows for maximum
throughput, the 16 capillary array of the 3130xl
genetic analyzer can run up to 384 samples in
24hours
We welcome users that are interested in running
Sequencing and Fragment Analysis.
Two SSRs:Four individuals
CONTACT US
Melaku Gedil, PhD
Head and Molecular Geneticist
PMB 5320 Oyo Road, Ibadan, Nigeria
phone via USA: +1-201 633 6094 extension2703
phone direct: + 234 2 751 7472 extension2703
Email: [email protected]
Ayodele Alonge
Lab Manager
phone via USA: +1-201 633 6094 extension 2702
phone direct: + 234 2 751 7472 extension 2702
Email: [email protected]
WEBSITE
http//bioscience .iita.org