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REVIEWS Genetics of mammalian meiosis: regulation, dynamics and impact on fertility Mary Ann Handel* and John C. Schimenti‡ Abstract | Meiosis is an essential stage in gamete formation in all sexually reproducing organisms. Studies of mutations in model organisms and of human haplotype patterns are leading to a clearer understanding of how meiosis has adapted from yeast to humans, the genes that control the dynamics of chromosomes during meiosis, and how meiosis is tied to gametic success. Genetic disruptions and meiotic errors have important roles in infertility and the aetiology of developmental defects, especially aneuploidy. An understanding of the regulation of meiosis, coupled with advances in genomics, may ultimately allow us to diagnose the causes of meiosis-based infertilities, more wisely apply assisted reproductive technologies, and derive functional germ cells. Disjunction The separation of chromosomes or chromatids during anaphase of mitosis or meiosis. The failure of chromosomes to separate at anaphase is called non-disjunction. Aneuploidy The presence of an abnormal number of chromosomes, either more or less than the diploid number. It is associated with cell and organismal inviability, birth defects and cancer. *The Jackson Laboratory, 600 Main Street, Bar Harbor, Maine 04609, USA. ‡ Cornell University, College of Veterinary Medicine, Ithaca, New York 14853, USA. e-mails: maryann.handel@ jax.org; [email protected] doi:10.1038/nrg2723 Published online 6 January 2010 Meiotic recombination generates diversity within a population but, equally importantly, it creates the con nections between homologous chromosomes — chias mata — that hold them in opposition on the meiotic spindle and ensure their accurate segregation. Correct execution of meiosis is essential for fertility, for main taining the integrity of the genome and for ensuring the normal development of offspring. In most organ isms, crossover (CO) recombination in meiosis is required to ensure accurate segregation of homologous chromosomes at the first meiotic division. The absence of crossing over can result in random disjunction and aneuploidy, which leads to embryonic death or develop mental abnormalities. Indeed, gametic aneuploidy is a major cause of birth defects in humans1. Most gametic aneuploidy originates during oogenesis, particularly during the first meiotic division, and the frequency of such errors increases with female age. Therefore, aside from the fundamental importance of meiosis to the eukaryotic life cycle and the evolution of diversity, the process of meiosis is of paramount relevance to successful human reproduction. Our understanding of the genetic control of meiosis and meiotic recombination in mammals has depended heavily on studies of tractable model organisms, such as yeast, as well as directed approaches in mice. Although there are clear differences among organisms 2, the most salient features of meiosis are conserved. Indeed, many of the fundamental genes and proteins that are involved in conserved structures and processes related to recombination and chromosome behaviour have rec ognizable orthologues from fungi to mammals. Mouse models with null mutations in many of the orthologous yeast genes have been generated. Often (but not always) they have phenotypes that are similar to yeast. However, it is also clear that many meiotic proteins show little sequence conservation and that mammals have many genes required for meiosis that do not have orthologues in yeast, and vice versa. Because most of the genetic ‘low hanging fruit’ — that is, the mammalian orthologues of meiosis genes from other organisms — have already been ‘picked’ through the generation of mouse mutants, the challenge now becomes one of identifying the other genes that are required for mammalian meiosis and that potentially affect human fertility. Methods such as tran scriptional profiling have helped to identify genes for targeted mutagenesis. Alternatively, unbiased mutagen esis and phenotype screening for infertility have led to the discovery of novel and/or previously unsuspected meiotic genes3–5. These genetic approaches and other increasingly powerful genomic technologies are likely to result in new discoveries in the genetics of human and mammalian meiosis. Here, after a brief overview of meiotic events, we focus on the essential features of meiosis. For each of the most important steps in meiosis we consider what is known about genetic regulation in mammals and how this com pares to yeast, in addition to the implications of meiotic errors and mutations for human fertility. We consider how understanding the regulation of meiosis can affect 124 | FeBruAry 2010 | VOluMe 11 www.nature.com/reviews/genetics © 2010 Macmillan Publishers Limited. All rights reserved REVIEWS S phase Prophase I Metaphase I Two chromatids Two chromatids Anaphase I Chiasma Haploid gametes Telophase I Anaphase II Metaphase II (Ovulation) Fertilization Nature Reviews | Genetics Figure 1 | Mammalian meiosis and gametogenesis. The beige cells in the central portion of the figure depict the events of meiosis. Spermatocytes and oocytes differ markedly in their development. The distinctions are highlighted at key stages by diagrams of the male (blue) and female (pink) germ cells in brackets outside the central diagram. Meiosis is preceded by DNA replication in a pre-meiotic S phase that is frequently longer than the usual mitotic S phase. It results in cells with 4C DNA content. S phase is followed by the long meiosis I prophase, during which homologous chromosomes pair and undergo recombination in a series of events that define the substages of meiosis I prophase (FIGS 2,3). These events are accompanied by synapsis of the chromosomes in a specialized meiotic structure, the synaptonemal complex (SC, shown in green in the prophase I gonocyte). At metaphase of the first meiotic division (metaphase I), chiasmata (one chiasma is shown) maintain homologous chromosomes in a bipolar orientation. The first, reductional meiotic division separates the homologues (anaphase I and telophase I). The result is two cells (or, in females, one cell with a polar body, shown as a small yellow sphere). These are the secondary gametocytes: each has haploid chromosome content, but each chromosome is still comprised of two chromatids. The second meiotic division is an equational one: in male germ cells the chromatids are separated to form immature spermatids, each of which contains the haploid 1N chromosome number and 1C DNA content; in female germ cells the second meiotic division occurs after fertilization, so that the fertilized egg contains two haploid pronuclei, one paternal (blue) and the other maternal (pink), as well as three polar bodies. Chromatid An identical copy of a chromosome that is created through DNA replication. The two sister chromatids of a chromosome each become a chromosome when their centromeres are separated in mitosis or in the second meiotic division. recent applications of assisted reproductive technologies (ArTs) and efforts to derive gametes in vitro. Although neither the frequency of meiotic mutations nor the rate of infertility due to such mutations in the human popula tion is known, the incidence of human aneuploidy due to meiotic error is quite high — approximately 5% of all conceptuses exhibit monosomy or trisomy 1. Therefore, we draw attention to particular features of mammalian meiosis, including sexual dimorphism, and how these affect human fertility and the wellbeing of offspring. Meiosis and gametogenesis: an overview Meiosis, which is intimately tied to gametogenesis in higher eukaryotes, is characterized by an extended prophase, followed by two divisions that produce gam etes (FIG. 1). The premeiotic DNA replication generates primary gametocytes in which each chromosome is com prised of two chromatids (4C DNA content). In females, the entire oogonial population initiates meiosis synchro nously in fetal ovaries. Meiotic prophase is arrested before birth and resumed in small subsets of the oocyte popula tion at periodic intervals after puberty. By contrast, male mammals are born with a population of spermatogonial stem cells; meiosis is initiated in maturing cohorts of spermatogonia, resulting in the continuous production of sperm throughout the reproductive lifespan. During the meiosis I prophase, homologous chro mosomes pair and synapse, a process that is mediated by a unique meiotic scaffold, the synaptonemal complex (SC). The substages of meiosis I prophase are defined by chromosome configurations and structure: pairing, which occurs during the leptotene and zygotene stages; NATure reVIeWS | Genetics VOluMe 11 | FeBruAry 2010 | 125 © 2010 Macmillan Publishers Limited. All rights reserved REVIEWS Synapsis The intimate apposition that occurs after pairing of homologous chromosomes along their length during prophase I of meiosis; synapsis is mediated by a proteinaceous structure, the synaptonemal complex. Double-strand break A serious form of DNA damage that is created enzymatically during meiosis and that stimulates repair by crossover or non-crossover recombination. Induced pluripotent stem cells These are derived from somatic cells by ‘reprogramming’ or de-differentiation triggered by the transfection of pluripotency genes, which alters the somatic cells to a state that is similar to that of embryonic stem cells. synapsis, which is completed at the onset of the pachytene stage; and desynapsis, which occurs during the diplotene stage (FIG. 2). This intricate chromosomal choreography accompanies the events of recombination, which is initiated by DNA double-strand breaks (DSBs); during recombination, these breaks are repaired by either CO or nonCO (NCO) processes (see below). Patterns of recombination in meiotic prophase differ between sexes (see below). The first meiotic division is reductional and separates homologous chromosomes, producing secondary gametocytes (FIG. 1). This division is sexually dimorphic: in males it results in two secondary sperma tocytes and in females it results in one secondary oocyte and a polar body. The second meiotic division — an equational division that separates sister chromatids — is also sexually dimorphic, both in its timing and in the products formed. In males it occurs immediately after the first division and produces four haploid sperma tids. In females, the timing of the second meiotic divi sion is coordinated with ovulation and fertilization, and Leptonema SPO11 DMC1 RAD51 γH2AX yields a haploid oocyte and another polar body. In both cases, the products are gamete cells with the haploid 1N chromosome number and 1C DNA content. The fact that meiosis is always a subprogram of gametogenesis in higher eukaryotes (FIG. 1) raises several important considerations. First, mammalian germ cells are surrounded by specialized somatic cells (Sertoli cells in males and granulosa cells in females) that influence their homeostasis and meiotic status. For these reasons, it has not yet been possible to successfully sustain ini tiation and continuous execution of all steps of meiosis in vitro. This is relevant to attempts to derive germ cells from embryonic stem cells or induced pluripotent stem cells (iPS cells). The key features of meiosis (FIGS 1,2) are the essential hallmarks that must be met for a convinc ing demonstration of meiosis in vitro and in mamma lian germ cells derived from precursor stem cells. Our inability to promote all of the meiotic stages of male germ cells in vitro is also important to consider in the context of ArTs that involve the injection of immature Pachynema Sister chromatids MLH1 MLH3 Zygonema Diplonema Centromere Cohesins Central zone γH2AX DMC1 RAD51 SYCP1 SYCP2 SYCP3 Chiasma AE Figure 2 | Meiotic chromatin substages. The substages of meiosis I prophase in mammals; similar substages occur in yeast and many other organisms (here mammalian protein symbols are indicated). During leptonema, homologous Nature the Reviews | Genetics chromosomes begin to align but are not yet paired. A chromosomal scaffold begins to form through the assembly of axial elements (AEs) from cohesin proteins (for example, REC8 and structural maintenance of chromosomes 1B (SMC1B)) and synaptonemal complex (SC)-specific proteins, such as SYCP3 and SYCP2. The chromatids experience genetically programmed double-strand DNA breaks (induced by SPO11), which provide the substrate for recombination (the two chromatids of the upper homologue are depicted by a turquoise line, and the two chromatids of the lower homologue are depicted by a gold line). The breaks are recognized by homologous recombination repair machinery (including phosphorylation of H2AX to form γH2AX by ataxia telangiectasia mutated (ATM)) and resected, which triggers binding by the recombinase A (RECA)-related proteins DMC1 and RAD51, among other proteins, which colocalize to electron-dense structures called recombination nodules (RNs) along the developing AEs. By zygonema, it is obvious that homologous chromosomes have found each other; pairing extends and synapsis is initiated, forming the SC, and the AEs begin to ‘zip’. Through this process the AEs become the lateral elements (LEs) of the SC. Pachynema is defined by completion of synapsis, at which point the central zone of the SC is apparent; it is comprised of proteins such as SYCP1, synaptonemal complex central element protein 1 (SYCE1) and SYCE2. The pachytene stage is lengthy and includes maturation of a subset of meiotic recombination sites (<10%) into crossovers marked by the mismatch repair proteins MutL protein homologue 1 (MLH1) and MLH3, which also colocalize to RNs. After recombination is completed, chromosomes undergo desynapsis and condense in the final diplotene substage. At this stage, the homologues are held together by the recombination sites (crossovers), which are seen in cytological preparations as chiasmata. Figure is modified, with permission, from REF. 127 (2005) Society for Reproduction and Fertility. 126 | FeBruAry 2010 | VOluMe 11 www.nature.com/reviews/genetics © 2010 Macmillan Publishers Limited. All rights reserved REVIEWS male germ cells into oocytes; research shows that some events of meiosis may not be properly recapitulated outside the testis6. Initiation and regulation of the meiotic program Yeast. Control over entry into meiosis is best under stood in Saccharomyces cerevisiae, in which genetic and molecular studies have led to a relatively comprehen sive understanding of the transcriptional regulation of genes involved in meiosis 7. The ‘master regulator’ of yeast meiosis is meiosisinducing protein 1 (Ime1), which, by interacting with the DNAbinding protein ume6, activates transcription of ‘early’ meiosis genes. Ime1 expression is affected by nutritional signals and is dependent upon respiration8,9. The early genes, which encode proteins that are required for premeiotic DNA synthesis and subsequent meiosisspecific chromosomal events, such as recombination and synapsis, enable entry into the meiotic cell cycle. Among the genes activated in this first wave are NDT80 (which encodes a transcrip tion factor) and IME2 (which encodes a kinase that acti vates Ndt80). These in turn stimulate the transcription of ‘middle’ genes that are required for meiocyte divisions and spore formation, followed by ‘late’ genes that are involved in spore maturation. The application of gene expression profiling technology to meiotically synchro nized budding 10 and fission11 yeast cultures aided in the characterization of transcriptional regulatory cascades. Cohesins Multi-protein complexes that maintain tight association (cohesion) of sister chromatids. Resection In the context of recombination, strand-biased enzymatic removal of nucleotides at the site of a double-strand break. In most recombination models, resection occurs in the 5′ to 3′ direction. Mammals. In mammals, meiotic entry requires exit from a mitotic program — for example, the mitotic population of oogonia or spermatogonial stem cells and differentiated spermatogonia. Meiotic prophase is marked by a prolonged premeiotic S phase. Mammals have no clear orthologues of the key meiotic transcrip tional regulatory genes NDT80 and IME2. A germ cellspecific gene encoding a protein with sequence similarity to Ime2, malegermcellassociated kinase (Mak), is not essential for fertility in mice12. Several studies have characterized the transcriptome during male meiosis in mice13,14, but regulators of the mam malian meiotic program remain largely unidentified. A major advance was the discovery that the onset of meiosis in mice is regulated by retinoic acid (rA) and mediated by the product of stimulated by retinoic acid 8 (Stra8), which is conserved throughout amniotes15–17. The effect of rA on Stra8 induction and initiation of meiosis is sexually dimorphic in timing. In fetal ova ries, rA emanating from the mesonephroi induces Stra8 expression and causes germ cells to enter meiosis, which can be detected by waves of expression of meiotic markers, such as disrupted meiotic cDNA 1 homologue (Dmc1) and synaptonemal complex protein 3 (Sycp3) (see below). In fetal testes, which are also exposed to rA from the mesonephroi, Stra8 expression is not induced because a retinoiddegrading enzyme, CyP26B1 (a member of the cytochrome P450 family), is expressed in Sertoli cells (but not in fetal ovaries). Consequently, male germ cells do not enter meiosis at this time; the entry of germ cells into meiosis in the adult testis may be controlled, at least in part, by stagespecific expression of CyP26B1. The role of STrA8 and rA in regulating meiotic initiation in both spermatogenesis and oogenesis was confirmed by genetic analysis18. The regulation of meiotic initiation by rA could involve germcellintrinsic factors, such as the rNAbinding protein deleted in azoospermialike (DAZl), which may act upstream of Stra8 in the pathway of meiotic induction19. The lack of obvious mechanistic conserva tion between yeast and mice in regulating meiotic entry sets a challenge for future gene and pathway discovery. It is currently unclear whether meiotic entry failure underlies any cases of human infertility. Recombination: the crux of meiosis Crossing over is crucial for the proper segregation of homologous chromosomes at the first meiotic division of most organisms. The chiasmata formed by CO events, minimally one per chromosome in humans20, physically tether chromosome homologues to keep them attached during the end of prophase, when interhomologue cohesins are removed. Failure of a chromosome pair to undergo at least one CO can result in both homologues segregating to the same daughter cell at the reductional division, leading to aneuploidy. Meiotic recombination involves several steps (FIG. 3), including formation of DSBs, exonucleolytic resection of 5′ ends at the breaks and strand invasion into a chroma tid of the homologous chromosome. After this point, there is a divergence in subsequent steps between two major, distinct pathways — CO and NCO recombina tion (also known as the ‘modified Szostak model of doublestrand break repair’ and the ‘synthesisdependent strand annealing’ pathways, respectively 21). The molec ular components of the steps after DSB formation — such as the recombinase A (recA) homologues DMC1 and rAD51, which are involved in homolo gous recombination repair (Hrr) of DSBs — comprise the most conserved group of meiotic recombination proteins. This is consistent with Hrr being essential in mitosis as well as meiosis; in mitosis it is a crucial pathway for DNA damage repair in all organisms. Recombination initiation. Initiation of recombination by the genetically programmed formation of DSBs is an essential event that leads to both recombination and synapsis in mammals and yeast (FIG. 3). In S. cerevisiae, DSB formation occurs after premeiotic DNA replica tion and is catalysed by the SPO11 transesterase and at least nine other proteins22,23 (FIG. 3). Whereas SPO11 is highly conserved and is also required for meiotic DSB induction in mice24–26 (FIG. 4), only two of the other pro teins have defined mammalian homologues. These two are rAD50 and Mre11, which are part of a mitotic DSB repair complex, but no role has been found for them in meiotic DSB formation in mammals. It is likely that, as in yeast, several more mammalian proteins exist that are required for recombination initiation and the early steps of DSB processing. More sensitive methods for functional orthologue detection might identify these. Indeed, mouse orthologues of Mei4 and rec114 have recently been identified (r. Kumar, H. M. Bourbon and NATure reVIeWS | Genetics VOluMe 11 | FeBruAry 2010 | 127 © 2010 Macmillan Publishers Limited. All rights reserved REVIEWS DSB formation SPO11, MEI1, RAD50? (Locations influenced by: H3K4Me3, RNF212, DSBC1/RCR1) 5′ end resection 3′ end invasion D-loop formation DMC1, RAD51, MSH4, MSH5, HORMADs? dHJ formation Branch migration SDSA MLH1, MLH3, EXO1 dHJ resolution Reannealing Mismatch repair Crossovers Chiasmata Non-crossover Gene conversion Figure 3 | Overview of major meiotic recombination pathways. The horizontal red and blue lines represent Nature Reviews |single Genetics DNA strands. At the top, two homologous unpaired acrocentric chromosomes (which have centromeres at one end, as is the case in mice) are depicted. The remainder of the figure (except for the recombinant chromosomes on the bottom left) focuses on a small region (indicated by yellow boxes) of two homologous sister chromatids. Recombination is initiated by double-strand breaks (DSBs), and subsequent steps of recombination are thought to help establish inter-homologue interactions, including pairing, as indicated at the strand invasion step. Proteins that are known or thought (‘?’) to contribute to the various indicated steps are named on the left in bold. The two major recombination pathways are shown: on the left is the crossover (CO) pathway (the canonical Szostak model with double Holliday junctions (dHJs)), which leads to CO products that are visualized at metaphase I as chiasmata, and on the right is the non-crossover (NCO) pathway (also known as synthesis dependent strand annealing (SDSA)), which does not produce chiasmata but may result in a phenomenon called gene conversion, which has the appearance of a double CO within a small interval. The CO pathway is subject to the phenomenon of interference, but there is also evidence for a less prevalent, interferenceindependent pathway in mice, as has been observed in yeast128. Note that small regions of gene conversion can also occur in association with COs (bottom left). Recombination regulator 1 (RCR1) and double strand break control 1 (DSBC1) are the putative products of loci (or a single locus) on chromosome 17 that have been shown to influence recombination hotspot activity. EXO1, exonuclease 1; H3K4Me3, histone H3 lysine 4 trimethylation; HORMAD, HORMA domain-containing; MLH, MutL protein homologue; MSH, MutS protein homologue; RNF212, RING finger protein 212. B. de Massy, personal communication). Other yeast recombination initiation proteins may not have ortho logues outside vertebrates. This underscores the need for alternative discovery methods. One such method is forward genetic mutation screening in mice, which identified the only other mammalian gene known to be required for DSB formation, Mei1 (which encodes a pro tein of unknown activity)27 (FIG. 4). Other clues to genes involved in DSB formation are emerging from genetic studies that are aimed at revealing how the locations of crossing over are determined, as described below. Distribution of recombination events. The distribution of recombination events (both CO and NCO) through out the genome is not entirely random. rather, there are preferential locations, called hot spots, and other locations that rarely have recombination events, called cold spots. evidence is accumulating that hot spots are locations of more frequent DSB formation and that their locations are influenced by chromatin structure28,29. In yeast, in which genome size and other features make the detection of Spo11induced DSBs relatively sim ple, single DSB sites can be detected by Southern blot 128 | FeBruAry 2010 | VOluMe 11 www.nature.com/reviews/genetics © 2010 Macmillan Publishers Limited. All rights reserved REVIEWS SYCP3 RAD51 SYCP3 γH2AX SYCP3 MLH3 SYCP3 WT γH2AX Dmc1 Trip13 Ccnb1ip1 Genes Causes Mutant phenotype Mutant Spo11 Leptonema Zygonema/pachynema Pachynema Pachynema/diplonema • Asynapsis in zygonema • Absence or diminished γH2AX phosphorylation • No RAD51 foci • Extensive asynapsis • Excessive RAD51 foci and γH2AX • No/abnormal XY body in pachynema • Minor asynapsis • Persistent RAD51 foci • γH2AX on autosomes • No/abnormal XY body • Abnormal chromosome condensation or cohesion • Premature separation of homologues • No chiasmata • Metaphase I univalents • Lagging anaphase chromosomes • Failure to initiate recombination (no DSBs) • Failure to signal presence of or to process DSBs • Failure to repair DSBs • SC defects • Cell cycle defects • Minor DSB repair defect • SC defects • Cell cycle defects • Cohesion defects • Faulty meiotic sex chromosome inactivation • No crossing over • Faulty kinetochore cohesion • Cell cycle defects • Mismatch repair defects • Incomplete recombination repair • Mei1; Spo11 • Cdk2; Dmc1; Fkbp6; Psmc3ip (Hop2); Msh4; Msh5; Piwil2; Prdm9; Rec8; Syce1; Syce2; Sycp1; Sycp2; Sycp3 • Cpeb; H2afx; Smc1b; Tex11; Trip13 • Ccna1; Ccnb1ip1 (Hei10); Dmrtc2 (Dmrt7); Exo1; Hspa2; Mlh1; Mlh3 Reviews Figure 4 | Mouse meiotic mutant phenotypes. Numerous mouse meiotic mutants have been Nature generated, and| Genetics their underlying molecular defects can be deduced by probing surface-spread meiotic chromosomes with antibodies that are diagnostic for double-strand break (DSB) repair, synapsis or other chromatin features. Coupled with histopathological analysis, this provides a good assessment of processes that are disrupted. The figure gives examples of mutations that act at different stages of meiotic prophase I, as characterized by immunolabelling of surface-spread spermatocyte nuclei with the synaptonemal complex (SC) axial element synaptonemal complex protein 3 (SYCP3; in red) and γH2AX (a marker of DSBs), RAD51 (a marker of sites at which DSB repair by homologous recombination has begun) or MutL protein homologue 3 (MLH3; a marker of reciprocal recombinations). In leptonema, DSBs are induced by SPO11, which leads to phosphorylation of histone H2AX (to form γH2AX). γH2AX is absent in Spo11 mutants, but persists in some other mutants, such as thyroid hormone receptor interactor 13 (Trip13). In zygonema, synapsis between homologues is ongoing as DSBs are repaired by recombination. In the recombination-defective disrupted meiotic cDNA 1 homologue (Dmc1) mutant, there are persistent RAD51 foci and failed synapsis, which prevents entry into pachynema. Chromosomes are fully synapsed in pachynema and crossover sites contain MLH3; these sites are mostly absent in a cyclin B1 interacting protein 1 (Ccnb1ip1) mutant. Synapsed chromosomes separate prematurely in the mutant, which leads to activation of the spindle checkpoint at metaphase I. Other meiotic mutants and phenotypes that are typically observed are listed below these specific examples. The same analyses can be performed on germ cells from sterile human males who display maturation arrest, thereby allowing one to form a list of candidate genes (based on the mouse mutant phenotypes) that potentially underlie the phenotype. The images on the top row, second from right, and bottom row, second from right are from REF. 59. The image on the top right is from REF. 116. Ccna1, cyclin A1; Cdk2, cyclin dependent kinase 2; Dmrtc2, doublesex and mab-3 related transcription factor-like family C2; Exo1, exonuclease 1; Fkbp6, FK506 binding protein 6; Hspa2, heat shock-related 70 kDa protein 2; Msh5, MutS protein homologue; Piwil2, piwi-like 2; Prdm9, PR domain-containing 9; Psmc3ip, proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein; Smc1b, structural maintenance of chromosomes 1B; Syce, synaptonemal complex central element; Sycp, synaptonemal complex protein; Tex11, testis-expressed sequence 11. NATure reVIeWS | Genetics VOluMe 11 | FeBruAry 2010 | 129 © 2010 Macmillan Publishers Limited. All rights reserved REVIEWS Gene conversion Originally coined to describe non-Mendelian segregation of alleles obtained from a single meiosis, this typically (but not always) refers to a non-reciprocal form of non-crossover recombination that results in the alteration of the sequence of a gene (or DNA sequence) to that of its homologue. In ectopic gene conversion, the donor and recipient DNA strands are not allelic copies of the same locus. Checkpoint A mechanism that monitors the fidelity of cellular events and triggers cell cycle arrest and possibly apoptosis when errors are not corrected. In meiosis, unrepaired DNA damage and synapsis failure trigger checkpoints that can halt meiotic progression. analysis. With microarray technology, highresolution mapping of all recombination events in single yeast mei osis is possible30,31. This is a powerful way to analyse the effects of mutation or genetic variation on the distribu tion of DSBs. recently, Borde and colleagues32 found that recombination initiation sites in yeast are marked — before DSB formation — by histone H3 lysine 4 trimethylation (H3K4me3), which indicates that the selection of hot spots has an epigenetic component. This epigenetic mark of DSB sites is also a feature of mouse hot spots33. Notably, H3K4me3 modification is a fea ture of transcriptional promoters, which have long been recognized as sites of preferential DSB formation34. Hot spot analysis in mammals presents far greater technical difficulties, the two most serious of which are the larger genome size and the inability to recover all four products of meiosis. Nevertheless, it has been clear for a long time that COs are unequally distributed and that some hot spots in mice are strain dependent 35,36. Although detection of hot spots and their timing is more difficult than in yeast, singlemoleculebased PCr strategies have allowed highresolution analy ses of recombination events37,38. One important ques tion regarding the selection of recombination sites in hybrid strains is whether selection is driven by DNA sequences or by key proteins, or by a combination of the two. A subset of yeast hot spots have cisacting determinants, such as transcription factorbinding sites near promoters. However, there are clearly trans acting loci in both yeast and humans that influence hot spot site selection39,40. In mice, two remarkable genetic studies revealed a transacting locus or loci on chro mosome 17 that affects strainspecific hot spots41,42. Interestingly, this region contains the Pr domain containing 9 (Prdm9) H3K4 trimethyltransferase ‘speciation gene’, which is essential for both male and female meiosis in mice43,44 (FIG. 4). H3K4me3 marks yeast SPO11 break sites, as noted above. It is clear from highresolution haplotype analysis that the bulk of recombination in humans occurs at hot spots, although there is differential usage of particular hot spots between the sexes45. An analysis of recombina tion patterns in human families has implicated rING finger protein 212 (rNF212), a homologue of the yeast SC protein Zip3, as a determinant of sexspecific, genomewide human recombination rates46. A separate study also implicated this and other loci47. Therefore, in addition to forward genetics, classical genetic studies can be a powerful way of identifying genes that influence recombination patterns. Repair of double-strand breaks by recombination. SPO11induced DSBs trigger the meiotic equivalent of a DNAdamage response, which involves sensing of breaks, recruitment of Hrr proteins, and processing of recombination intermediates (FIG. 3). This general process is similar among organisms. Because DSB repair is a fundamental process in both somatic and meiotic cells and many of the proteins are highly conserved, we have more knowledge about this step than any other in meiosis. repair of a DSB by homologous recombination is eventually resolved either by an NCO event (poten tially resulting in gene conversion) or by a reciprocal CO event (which can also be associated with gene conver sion). Work in S. cerevisiae revealed that CO and NCO pathways are distinct 48; they have different recombina tion intermediates and are dependent upon different proteins21. Mice also seem to have independent CO and NCO pathways38. The number of recombination events per mouse meiosis can be estimated by the number of immunocytologically detected ‘foci’ of the recArelated rAD51/DMC1 proteins in leptonema49; these proteins catalyse homologous strand invasion in recombina tion. Of the >200 events estimated per meiosis, the vast majority are resolved as NCO events, compared with ~23 COs. This large amount of NCO recombination contributes to homologous chromosome pairing, but its contribution to haplotype structure is unclear. A major gap in our knowledge relates to the regula tion of recombination partner choice in mammals. In mitotic cells that have replicated their DNA (the S and G2 stages), spontaneous or environmentally induced DSBs are preferentially repaired using the identical sister chromatid as a template, because proximity and cohesion of sister chromatids predisposes to this out come. As the ‘purpose’ of meiotic DSBs is to stimulate recombination between homologous chromosomes, ultimately ensuring proper disjunction at the first mei otic division, mechanisms have evolved to prevent DSB repair through sister chromatid recombination — the socalled ‘barrier to sister chromatid repair’ (BSCr), which has been wellstudied in yeast 50,51. Whether or not mammals have this bias has not been shown formally; however, it must exist because without it homologues would not be joined and aneuploidy would result. In S. cerevisiae, the two key regulators of homologue bias are the small SC axial element (Ae) phosphoproteins red1 and Hop1. Potential mammalian orthologues of Hop1 — known as HOrMA domaincontaining 1 (HOrMAD1) and HOrMAD2 — also localize to chro mosome axes52,53. Obtaining functional evidence that a particular protein is involved in recombination partner bias presents a challenge; it will be difficult in mam mals to identify intersister recombination products that would be characteristic of a mutation disrupting the hypothetical BSCr. Checkpoints and quality control in meiosis. Defects in recombination can preclude homologous chromosome pairing and leave unrepaired chromosome breaks. To avoid such deleterious outcomes, surveillance systems (‘checkpoints’) exist to sense meiotic errors and elimi nate meiocytes that contain unresolved defects. In many organisms, including S. cerevisiae, Drosophila melanogaster and Caenorhabditis elegans 54–56, meiocytes with defects in recombination and/or chromosome synapsis trigger delay or arrest in the pachytene stage of prophase I. This response to meiotic defects is referred to as the ‘pachytene checkpoint’57. The pachytene check point monitors two aspects of meiotic chromosome metabolism in S. cerevisiae and C. elegans: DSB repair and chromosome synapsis55,58. 130 | FeBruAry 2010 | VOluMe 11 www.nature.com/reviews/genetics © 2010 Macmillan Publishers Limited. All rights reserved REVIEWS Despite the extensive work in yeast, mammalian meiotic checkpoint genes have yet to be identified unequivocally. The mouse orthologues (ataxia telangiectasia mutated (Atm) and thyroid hormone receptor interactor 13 (Trip13)) of two yeast checkpoint genes (TEL1 and PCH2) do not exhibit meiotic check point activity; rather, mutations in each cause severe recombination defects leading to meiotic arrest and infertility. Known mitotic DNAdamage checkpoint pro teins probably have a role in mammalian meiosis, but for those that are essential for viability, it is difficult to prove a meiotic function. Nevertheless, in mouse spermato cytes, as in S. cerevisiae, the DNAdamage and synapsis checkpoints are distinct 59,60. The molecular basis of the synapsis checkpoint, which is either more sensitive in males or different between the sexes61,62, also remains unknown. Immunocytological data support the idea that ataxia telangiectasia and rAD3related (ATr; the S. cerevisiae orthologue is Mec1), which is a key serine/threo nine kinase checkpoint protein that responds primarily to DNA damage arising during DNA replication, has a role in the mammalian meiotic pachytene checkpoint. In particular, it is thought to trigger meiotic silencing of unsynapsed chromatin (MSuC)63–65. However, direct evidence for a meiotic role has been precluded by the fact that Atr nullizygosity is lethal. In spite of their obvious importance in avoidance of gametic aneuploidy, the identification of the components of mammalian meiotic checkpoints faces major chal lenges. Features of a meiotic checkpoint gene would be that a mutation would not block meiosis but would allow the bypass of a particular defect, such as failed DSB repair or asynapsis. Forward genetic screens for such mutants are routine in S. cerevisiae, but sensi tized meiotic screens are not practical in mice. Possible strategies might be to use proteomics approaches (mass spectrometry) to identify signalling cascades that occur in response to defects66, or to genetically map alleles that are associated with elevated aneuploidy rates in mice or humans. Piwi-interacting RNAs Small germ-cell RNAs that interact with PIWI proteins. They are thought to be involved in the repression of retrotransposon expression during gametogenesis. Chromosome dynamics: pairing to segregation Fidelity of recombination and chromosome segregation and avoidance of aneuploidy are dependent upon the dynamics of chromosome pairing and synapsis during meiotic prophase. Much is known about the roster of proteins that contribute to formation of the chromo somal axes and the SC (FIG. 2), but little is known in any organism about exactly how the separable events of pair ing and synapsis come about. It is frequently assumed that the singlestrand overhangs at DSBs mediate the search by which homologous chromosomes find each other. Although this may well be true for the final stages of homologous synapsis, it is unlikely that small single stranded regions of DNA could be effective for early stages of the homology search, in which long lengths of longitudinally compacted DNA (that is, metres of DNA packaged into nuclei micrometres in diameter) must recognize homology and pair. Furthermore, DNA participating in the homology search is not naked, but is intimately associated with histones and other chromosomal proteins. Therefore, suprachromosomal features are likely to be important facilitators of the homology search. The two most well studied of these features in mammalian germ cells are the clustering of telomeres and the assembly of chromosomal Aes to form the SC; both processes are required for meiotic success and fertility in mammals and are discussed below. Telomere bouquets. A striking and highly conserved feature of early meiotic prophase cells is attachment and clustering of telomeres at the nuclear envelope (Ne). They form of a chromosomal ‘bouquet’67,68 that might facilitate homologous alignment along the length of chromosomes. In C. elegans, the cytoskeleton and the Ne protein SuN1 have been implicated as participating in chromosome pairing 69–71. In mammalian germ cells, telomere clustering involves uNC84A (also known as SuN1), which is an inner nuclear membrane protein that is required for anchoring Neinteracting proteins to the Ne. In spermatocytes, uNC84A colocalizes with telomeres. Unc84a deletion disrupts both bouquet for mation and homologous chromosome synapsis, result ing in male and female infertility 72. However, because altered expression of reproductive genes and piwiinteracting RNAs (pirNAs) also occurs, the exact causes of the phenotypic defects are uncertain73. In addition to telomere clustering in early meiotic prophase, the telomeric sequences themselves might have a role in recombination, as there is a relatively high rate of recombination in subtelomeric sequences, particu larly in the male germline74. In an examination of the effect of telomere erosion in telomerasedeficient mice, shortened telomeres were observed to correlate with lack of perinuclear distribution of telomeres, impaired homologous synapsis and decreased recombination75. Therefore, telomeres are structural and functional com ponents of chromosomes that are required for meiosis and fertility in mammals. The synaptonemal complex: structure and function. The most obvious suprachromosomal scaffold element associated with pairing and synapsis is the SC (FIG. 2). Although its role is not well understood, the SC is a feature of meiosis in nearly all eukaryotes, and its func tion (although not its specific proteins) must be evolu tionarily conserved because mutational disruption of the SC structure impairs meiosis in a wide variety of organisms. The SC is assembled from the precursor chromosomal Aes that align to form the lateral elements (les), which are separated in the mature SC by a central region (FIG. 2). Several excellent reviews of the mamma lian SC have appeared recently 76–78, and therefore aspects of its assembly will be only briefly covered here. The Aes along each pair of sister chromatids form initially from a chromosomal core of cohesin proteins 79. In mam mals, these include meiosisspecific variants of cohesin proteins, structural maintenance of chromosomes 1B (SMC1B), reC8 (which is related to rAD21) and STAG3 (which is related to STAG1). In mice, null alleles of SMC1B80 and reC8 (REFS 81,82) cause both male and female infertility with meiotic disruption (FIG. 4). NATure reVIeWS | Genetics VOluMe 11 | FeBruAry 2010 | 131 © 2010 Macmillan Publishers Limited. All rights reserved REVIEWS Interference A phenomenon in which the occurrence of a crossover recombination at one position on a chromosome suppresses the frequency of additional, nearby crossovers; inhibition decreases with physical distance. Bivalent Two paired or synapsed homologous chromosomes, each formed of two sister chromatids. Dictyate A ‘resting’ stage at the end of the first meiotic prophase. It is at the end of diplonema but before the resumption of meiosis and the onset of progress to metaphase of the first meiotic division. Anastral spindle A spindle formed without centrosomes (microtubuleorganizing centres) or the astral microtubules that usually surround the centrioles at spindle poles. Moreover, the axes of meiotic chromosomes that lack SMC1B or reC8 are notably shorter than normal and the chromatin loops that surround the Aes are longer than normal, which provides evidence for a role of Aes in longitudinal differentiation of meiotic chroma tin. Two SCspecific proteins, SyCP2 and SyCP3, are recruited to the chromosomal cores to form the mei otic Aes. In mice, the null allele of Sycp3 causes male infertility with failure of synapsis and reduced female fertility with elevated rate of oocyte aneuploidy 83,84 (FIG. 4). A similar phenotype is caused by a deletion of the coiledcoil domain of SyCP2, which is required for binding to SyCP3 (REF. 85) (FIG. 4), highlighting the essen tial nature of protein–protein interactions within the Aes and les. The sexually dimorphic phenotype of the Sycp3 and Sycp2 mutations suggests the possibility of different roles for the Aes in spermatocytes versus oocytes, or different kinds of checkpoints that moni tor meiotic progress. All of the proteins that have been identified so far that localize to the central region — including SyCP1 (REF. 86), synaptonemal complex cen tral element protein 1 (SyCe1)87, SyCe2 (REF. 88) and testisexpressed sequence 12 (TeX12)89 — seem to be essential for both male and female fertility (FIG. 4). These proteins, although not evolutionarily conserved at the amino acidsequence level, seem to have conserved functions and are required for the formation of COs that are subject to interference76. exactly what does the SC do? In spite of more than 50 years of study of the SC, the answer to this question is still not known for the wellstudied yeast model nor for mammalian germ cells. At the simplest level, it might serve solely to keep long loops of chromatin out of the way of the recombination machinery. It is more likely, however, that it has active, functional roles in homo logy searching, synapsis and recombination. By form ing a chromosomal scaffold and thereby partitioning the genome into ‘attached’ and ‘unattached’ sequences, the Aes might limit the homology search by a mecha nism that is dependent on the sequence specificity of attachment of genomic DNA to the SC scaffold. recently, Dernburg and colleagues90 identified repeat sequence motifs in the pairing centres of C. elegans chromosomes; these bind to several zinc fingercontaining proteins that interact with inner and outer Ne proteins. Although there is little knowledge of specific sequences that associ ate with the mammalian SC, two studies have suggested that such sequences might be enriched for long inter spersed elements (lINes) and short interspersed ele ments (SINes)91,92. The SC might also function through interactions of le scaffold proteins with proteins of the central region to bring about synapsis, mediated by protein–protein interactions rather than DNA–protein interactions. Specialized structures in the central region might provide the solid surface for the assembly of recombination complexes. Clearly, future genomic and proteomic analyses of chromatin modifications, DNA binding proteins and protein–protein interactions in the meiotic chromosomal scaffold are required to resolve these gaps in our understanding of the most fundamental chromosomal mechanics of meiosis. Segregating chromosomes. Although the roots of chro mosome segregation lie in the formation of chiasma during prophase, the dynamics of the division phase are also important for the production of chromosoma lly normal gametes. First, germ cells must ‘know’ that meiotic recombination is completed (for example, com pletion of recombination is linked to checkpoint mecha nisms) and then disassemble the SC to allow homologue separation at the first meiotic division. In budding yeast, several components of the meiotic exit signalling path way are known. A pololike kinase, Cdc5, is required for both CO resolution and SC disassembly, although the precise mechanisms by which it acts are not known93. Additionally, the kinase activity of an aurora B kinase promotes SC disassembly 94. In mammals, the exit from meiotic prophase shows significant sexual dimorphism. Spermatocytes, like budding yeast, proceed directly from pachynema into diplonema (FIG. 1). Desynapsis, the first and key step of prophase exit, requires the spermatocytespecific chap erone heat shockrelated 70 kDa protein 2 (HSPA2)95,96. The formation of highly condensed metaphase I bivalents and the disassembly of SCs are regulated by cyclin dependent kinases and aurora kinases97. HSPA2 also is required for CDC2 kinase–cyclin B1 complex formation and activation of the CDC2 kinase98. In oocytes, meiotic prophase is arrested in a diplotenelike dictyate stage; the arrest can last for months (in laboratory mice) or decades (in humans). resumption of meiotic progress and entry into the meiotic division phase is controlled by somatic cells and in vivo is hormonally prompted99. In the first meiotic division, nonsister kinetochores must orient to opposite poles without premature separa tion of sister chromatids. Precise control of the timing of degradation of the cohesin connections between sister chromatid arms compared with connections at the centromere ensures biorientation of homologues at metaphase I100,101. Additionally, a spindle assembly checkpoint (SAC) inhibits the dissolution of cohesion, which ensures that the reductional division does not occur until all bivalents are correctly attached; much is now known about the timing and mechanisms by which SAC proteins act 101,102. In the second meiotic division, sister chromatids are accurately segregated to spindle poles. Human oocyte aneuploidy rates are much higher than in sperm (25% compared with ~2%)103. Why are human oocytes, especially those from older women, so much more prone than spermatocytes to generate aneu ploidy? This is the key human health issue that must be resolved in future studies of meiosis. There is sexual dimorphism in the number, place ment and resolution of COs, in the assembly and func tion of the apparatus for the first meiotic division, and in checkpoint proteins, all of which might affect the fidelity of chromosome segregation62,101,102,104. The barrel shaped anastral spindle of the oocyte is asymmetrically positioned close to the egg surface, and in each of the two meiotic divisions chromosomes segregate either to a small polar body or to the oocyte; this is unlike the symmetric division of spermatocytes. evidence suggests that the ‘egg’ pole of the spindle could be a dominant 132 | FeBruAry 2010 | VOluMe 11 www.nature.com/reviews/genetics © 2010 Macmillan Publishers Limited. All rights reserved REVIEWS pole, which attracts a univalent X chromosome105, or acrocentric chromosomes rather than a biarmed chro mosome106,107, providing a potential mechanism for nonrandom segregation and biased chromosome con tent. Furthermore, oocytes have a long resting period, so the temporal stability of chromosome interactions might have implications for the rate of gametic aneu ploidy in human females compared with males108. For example, there might be agerelated failure of cohesin proteins to maintain sisterchromatid cohesion in the first meiotic division109 or deficiencies in checkpoint pro teins that lead to agerelated deterioration of checkpoint mechanisms110. However, a study of a naturally ageing mouse model suggests that these explanations may be simplistic111. Therefore, determining the mechanisms in the aetiology of nonrandom chromosome segrega tion begs the resolution of our poor understanding of the function of the oocyte spindle. This is likely to come not only from the unbiased discovery of gene functions in meiosis (for example, the discovery of the genes that encode proteins involved in cohesion, kinetochores and motor functions) but also from highresolution, real time, threedimensional imaging of chromosome inter actions with the spindle in oocytes and spermatocytes. Box 1 | A scenario for identifying and curing meiotic infertility mutations Advances in next-generation DNA sequencing technology, germline stem cell culture and assisted reproductive technologies have allowed us to envision a scenario for correcting meiosis-based infertility in the future. As outlined in the figure, the approach would permit the identification of potentially causative mutations, the functional evaluation of candidate mutations, and gene transfer to create viable sperm that are not genetically altered. In this scenario, a patient with meiotic arrest would have his genome sequenced, and computationally predicted deleterious mutations in known or presumed meiotic genes would be identified (such as ‘gene X’). The ‘meiotic’ genes could be informed from knowledge accumulated in model organisms, such as mice (for example, the mouse mutations shown in FIG. 4). An expression construct bearing a fully functional copy of gene X would be built (and possibly tagged with a reporter such as GFP, denoted in green in the figure) and transfected into spermatogonia cultured from the patient — these would be available because stem cells are still present in testes that have meiotic arrest. After culturing under conditions such as those developed in recent years126, transformed spermatogonia could be either re-introduced into the patient’s testes or induced to undergo meiosis in culture; the latter option assumes the development of methods that support accurate meiosis (for example, Sertoli cell co-cultures in the presence of differentiation-inducing factors). The rescue of meiosis, especially using an in vitro system, would prove that the mutation was indeed causative of the arrest phenotype. The resulting spermatozoa (or round spermatids) from the testis could be used for in vitro fertilization (IVF), and the spermatozoa from the culture system could be used for IVF, intracytoplasmic sperm injection (ICSI) or round spermatid nucleus injection (ROSNI). Note that although only half of the sperm would carry the rescuing transgene (shown as an orange bar), even non-transgenic sperm would be rescued owing to syncytial development during spermatogenesis (FIG. 1) and consequent sharing of meiotic products (all meiotic products are shown in green as they share the GFP tag). However, after fertilization only embryos that lack the transgene (that is, that do not contain any altered DNA) would be chosen for transfer to the patient’s partner. Notably, in the event that a meiotic defect is caused by a genetic situation other than homozygosity for a recessive allele — such as heterozygosity for a haploinsufficient or semidominant mutation — transgene overexpression could rescue meiosis. Therefore, the infertility specialist could select embryos that lack both the transgene and mutant allele so that infertility alleles would not be propagated. Testis ATTAGCCA Gene X DNA from sterile patient Sequence genome Identify mutation in meiotic gene X Spermatogonial stem cells IVF Gene X Univalent An unpaired chromosome at metaphase I: usually one that has failed to synapse or recombine with its homologue. Acrocentric chromosome A chromosome with a centromere near to one end so that one arm is very short. IVF ICSI ROSNI Culture system for meiosis Nature Reviews | Genetics NATure reVIeWS | Genetics VOluMe 11 | FeBruAry 2010 | 133 © 2010 Macmillan Publishers Limited. All rights reserved REVIEWS Isodicentric chromosome A cytogenetically anomalous chromosome characterized by the presence of two centromeres, with additional, identical copies of DNA segments joined end to end. 1. 2. 3. 4. 5. 6. Perspectives and challenges for fertility and ARTs As emphasized throughout this review, the penalties of mutations that cause meiotic error are either germcell arrest (hence, infertility) or the generation of aneuploid or mutationcontaining gametes (FIG. 4). However, the astute reader may have noticed that there has been no discussion of human infertility caused by meiotic muta tions in the preceding sections, which is because we really have no unequivocal evidence for causality. There have been a number of candidate gene resequencing studies on humans who have ‘maturation arrest’ — a common male infertility phenotype that resembles some of the mouse meiotic mutants shown in FIG. 4 — and putative mutations have been identified in SC and recombina tion genes112–115. However, causality is difficult to estab lish for individual human patients. Furthermore, all of the reported mutations have been heterozygous, which means that they would most likely have to be dominant to be causative; proof in principle for dominant meiotic mutations has been presented for only one key recom bination gene in mice, Dmc1 (REF. 116). Furthermore, the use of ArT poses the risk of passing such mutations to offspring. The advent of personal genome sequencing and further targeted resequencing of candidate genes in infertile individuals will facilitate the identification of more potentially causative mutations that underlie maturation arrest. The major issues then become vali dating the causality of the mutations and developing safe assisted reproduction methods to correct or overcome a validated mutation. In BOX 1, we present a hypothetical scenario that addresses both issues. What is the impact of meiotic recombination itself on the health of offspring and future generations, aside from issues of infertility and aneuploidy? unequal cross ing over between regions with closely related sequences and repeats can give rise to sequence copynumber variants and deletions or duplications. Such structural changes are implicated in some of the human ‘genomic’ disorders, including some hereditary neuropathies, Prader–Willi syndrome and Angelman syndrome117. The frequency of such events might be affected by cer tain alleles of mismatch repair proteins that normally prevent recombination of partially divergent sequences (‘homeologous’ recombination), or might increase in environmental or genetic situations in which there is Hassold, T., Hall, H. & Hunt, P. The origin of human aneuploidy: where we have been, where we are going. Hum. Mol. Genet. 16, R203–R208 (2007). Hunter, N. Synaptonemal complexities and commonalities. Mol. Cell 12, 533–535 (2003). Ward, J. O. et al. Toward the genetics of mammalian reproduction: induction and mapping of gametogenesis mutants in mice. Biol. Reprod. 69, 1615–1625 (2003). Handel, M. A., Lessard, C., Reinholdt, L., Schimenti, J. & Eppig, J. J. Mutagenesis as an unbiased approach to identify novel contraceptive targets. Mol. Cell. Endocrinol. 250, 201–205 (2006). O’Bryan, M. K. & Kretser, D. Mouse models for genes involved in impaired spermatogenesis. Int. J. Androl. 29, 76–89 (2006). Kimura, Y., Tateno, H., Handel, M. A. & Yanagimachi, R. Factors affecting meiotic and developmental competence of primary spermatocyte nuclei injected into mouse oocytes. Biol. Reprod. 59, 871–877 (1998). increased DNA damage. These examples underscore the need for better understanding of how chromatin is attached to the SC, which normally allows precise pair ing of nonsister chromatids. Additionally, in spite of the obligatory homologue bias of meiotic recombination, sisterchromatid recombination does occur on human y chromosomes, where gene conversion maintains long stretches of palindromes118. One consequence of this mechanism for maintaining the y chromosome is occa sional unequal exchange, which can result in an unstable isodicentric chromosome. When inherited, an isodicentric y chromosome can lead to disorders that include infer tility, aberrations in sex determination mechanisms and Turner syndrome118. Finally, much attention has been devoted recently to the generation of functional gametes from embry onic stem cells or iPS cells. In any attempt to generate mammalian gametes in vitro, it will be challenging to mimic the roles of the somatic cells that act in both instructive and permissive roles to support meiosis and gametogenesis. Any use of in vitroderived mammalian gametes (for example, for the controlled reproduction of domestic food animals) must be predicated on rigor ous proof of the execution of key steps in meiosis and the fidelity of chromosome segregation. The features expected of a population of cells in meiosis are: that a significant fraction of the cells have 4C DNA content and a small fraction of the population has 1C DNA content; that the 1C population of putative gametes must exhibit appropriate chromosomal content (1N) and segregation of alleles; that homologous chromosomes are compacted with a clearly defined tripartite SC; and that condensed metaphase chromosomes exhibit chiasmata. These are crucial criteria for measuring the success of in vitro deri vation of mammalian meiotic cells, and they have not yet been met in full by studies that report the derivation of germ cells from stem cells119–125. ultimately, the identification of genetic risk factors that have an impact on the generation of gametic aneu ploidy is an imperative for ArTs and human health. 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Bowles, J. & Koopman, P. Retinoic acid, meiosis and germ cell fate in mammals. Development 134, 3401–3411 (2007). www.nature.com/reviews/genetics © 2010 Macmillan Publishers Limited. All rights reserved REVIEWS 18. Anderson, E. L. et al. Stra8 and its inducer, retinoic acid, regulate meiotic initiation in both spermatogenesis and oogenesis in mice. Proc. Natl Acad. Sci. USA 105, 14976–14980 (2008). 19. Lin, Y., Gill, M. E., Koubova, J. & Page, D. C. Germ cell-intrinsic and -extrinsic factors govern meiotic initiation in mouse embryos. Science 322, 1685–1687 (2008). 20. Fledel-Alon, A. et al. Broad-scale recombination patterns underlying proper disjunction in humans. PLoS Genet. 5, e1000658 (2009). 21. Cromie, G. A. & Smith, G. R. Branching out: meiotic recombination and its regulation. Trends Cell Biol. 17, 448–455 (2007). 22. Murakami, H. & Keeney, S. Regulating the formation of DNA double-strand breaks in meiosis. Genes Dev. 22, 286–292 (2008). 23. Maleki, S., Neale, M. 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References 32 and 33 report that recombination initiation sites (hot spots) have signature chromatin modifications — H3K4me3 — in yeast and mice. These studies define epigenetic characteristics of loci that are targets for SPO11-mediated DSB formation, and provide a framework for understanding the underlying signals and mechanisms of recombination site selection. 34. Kniewel, R. & Keeney, S. Histone methylation sets the stage for meiotic DNA breaks. EMBO J. 28, 81–83 (2009). 35. Shiroishi, T. et al. Recombinational hotspot specific to female meiosis in the mouse major histocompatibility complex. Immunogenetics 31, 79–88 (1990). 36. Shiroishi, T., Sagai, T. & Moriwaki, K. Hotspots of meiotic recombination in the mouse major histocompatibility complex. Genetica 88, 187–196 (1993). 37. Kelmenson, P. M. et al. A torrid zone on mouse chromosome 1 containing a cluster of recombinational hotspots. Genetics 169, 833–841 (2005). 38. Guillon, H., Baudat, F., Grey, C., Liskay, R. M. & de Massy, B. Crossover and noncrossover pathways in mouse meiosis. Mol. Cell 20, 563–573 (2005). This paper describes molecular analysis of CO and NCO events at a recombination hot spot in mice. The authors found there were different genetic requirements and recombinant product characteristics that led them to conclude that these two pathways are distinct. 39. Khil, P. P. & Camerini-Otero, R. D. Variation in patterns of human meiotic recombination. Genome Dyn. 5, 117–127 (2009). 40. Borts, R. H. The new yeast is a mouse! PLoS Biol. 7, e106 (2009). 41. Grey, C., Baudat, F. & de Massy, B. Genome-wide control of the distribution of meiotic recombination. PLoS Biol. 7, e35 (2009). 42. Parvanov, E. D., Ng, S. H., Petkov, P. M. & Paigen, K. Trans-regulation of mouse meiotic recombination hotspots by Rcr1. PLoS Biol. 7, e36 (2009). 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MUS81 generates a subset of MLH1–MLH3-independent crossovers in mammalian meiosis. PLoS Genet. 4, e1000186 (2008). Acknowledgements The authors thank P. Cohen, J. Eppig, K. Paigen and L. Reinholdt for comments on the manuscript. We apologize to authors whose papers could not be cited owing to space limitations. Competing interests statement The authors declare no competing financial interests. DATABASES Entrez Gene: http://www.ncbi.nlm.nih.gov/gene IME2 | NDT80 | Prdm9 | Stra8 OMIM: http://www.ncbi.nlm.nih.gov/omim Angelman syndrome | Prader–Willi syndrome UniProtKB: http://www.uniprot.org DMC1 | HSPA2 | Ime1 | RAD51 | RNF212 | SPO11 | SYCE1 | SYCP2 | Ume6 FURTHER INFORMATION Mary Ann Handel’s homepage: http://research.jax.org/faculty/mary_ann_handel.html John C. Schimenti’s homepage: http://www.vet.cornell.edu/BioSci/Faculty/Schimenti All links Are Active in the Online pdf www.nature.com/reviews/genetics © 2010 Macmillan Publishers Limited. All rights reserved