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Glossary of Terms Antigen: Almost anything that is non-self. Typical antigens are viruses, bacteria, parasites, pollen and foreign cells. The term antigen may refer to the whole complex, or to a piece of the complex. T-cells generally see pieces of the antigen while B-cells can either bind to the whole antigen or to a piece of the antigen. Epitope:The small area on the antigen that the B-cell or T-cell actually recognizes and binds. Cytokine: Small molecules secreted during an immune response that help to signal and activate responding cells. Interferons (IFNs) are cytokines that inhibit viral replication within cells. Chemokines: Also small molecules secreted during an immune response, these often signal cells to migrate to areas of inflammation. HLA: Human Luekocyte Antigens. Encoded by the major histocompatibility complex (MHC) on chromosome 16 in humans. Present antigens and determine tissue type. Class I antigens: HLA antigens found on all nucleated cells, bind and present antigens that are made within the cell. Interact with the CD8 molecule on cytotoxic T-cells. Class II antigens: HLA antigens that are predominately on antigen presenting cells. Can be upregulated on other cells in response to interferon and cytokines. Presents antigens that are endocytosed or phagocytosed into the cell. Interacts with the CD4 molecule on helper T-cells.