* Your assessment is very important for improving the workof artificial intelligence, which forms the content of this project
Download APPENDIX A: FITNESS DERIVATIVES AND BRANCHING CRITERIA
Dual inheritance theory wikipedia , lookup
Gene therapy wikipedia , lookup
Transposable element wikipedia , lookup
Genomic imprinting wikipedia , lookup
Epigenetics of human development wikipedia , lookup
Genetic engineering wikipedia , lookup
Gene nomenclature wikipedia , lookup
Nutriepigenomics wikipedia , lookup
Polymorphism (biology) wikipedia , lookup
Minimal genome wikipedia , lookup
Biology and consumer behaviour wikipedia , lookup
Gene desert wikipedia , lookup
Therapeutic gene modulation wikipedia , lookup
Public health genomics wikipedia , lookup
History of genetic engineering wikipedia , lookup
Helitron (biology) wikipedia , lookup
The Selfish Gene wikipedia , lookup
Koinophilia wikipedia , lookup
Genome editing wikipedia , lookup
Gene expression profiling wikipedia , lookup
Site-specific recombinase technology wikipedia , lookup
Adaptive evolution in the human genome wikipedia , lookup
Population genetics wikipedia , lookup
Artificial gene synthesis wikipedia , lookup
Genome (book) wikipedia , lookup
Gene expression programming wikipedia , lookup
Designer baby wikipedia , lookup
search Advanced Search About Resources Contact Us My Account : Log in | Admin | Help Browse | Subscribe | Publish Titles Publishers Featured Articles How to SubscribeList of SubscribersDeveloping World Programs Current PublishersJoining BioOne CompleteBenefits of ParticipationPublishing Open AccessSubmit to a BioOne Journal Article Access To access the full text of this article please log in, or select from the access options below. ALLELIC DIVERGENCE PRECEDES AND PROMOTES GENE DUPLICATION Stephen R. Proulx, Patrick C. Phillips, and L. Katz Evolution May 2006 : Vol. 60, Issue 5, pg(s) 881-892 doi: 10.1554/05-507.1 Abstract & References ALLELIC DIVERGENCE PRECEDES AND PROMOTES GENE DUPLICATION CLOSE Stephen R. Proulx Center for Ecology and Evolutionary Biology, 5289 University of Oregon, Eugene, Oregon 97403 [email protected] Stephen R. Proulx and CLOSE Patrick C. Phillips Center for Ecology and Evolutionary Biology, 5289 University of Oregon, Eugene, Oregon 97403 Patrick C. Phillips L. Katz The Society for the Study of Evolution Received: September 6, 2005; Accepted: February 23, 2006 [+] Author & Article Info Author Affiliations Stephen R. Proulx1 Center for Ecology and Evolutionary Biology, 5289 University of Oregon, Eugene, Oregon 97403 [email protected] Patrick C. Phillips Center for Ecology and Evolutionary Biology, 5289 University of Oregon, Eugene, Oregon 97403 Copyright & Usage The Society for the Study of Evolution Abstract One of the striking observations from recent whole-genome comparisons is that changes in the number of specialized genes in existing gene families, as opposed to novel taxon-specific gene families, are responsible for the majority of the difference in genome composition between major taxa. Previous models of duplicate gene evolution focused primarily on the role that neutral processes can play in evolutionary divergence after the duplicates are already fixed in the population. By instead including the entire cycle of duplication and divergence, we show that specialized functions are most likely to evolve through strong selection acting on segregating alleles at a single locus, even before the duplicate arises. We show that the fitness relationships that allow divergent alleles to evolve at a single locus largely overlap with the conditions that allow divergence of previously duplicated genes. Thus, a solution to the paradox of the origin of organismal complexity via the expansion of gene families exists in the form of the deterministic spread of novel duplicates via natural selection. Keywords: Gene duplication, heterozygote advantage, natural selection, multigene family, polymorphism Literature Cited Abrams, P. A., H. Matsuda, and Y. Harada. 1993. Evolutionary unstable fitness maxima and stable fitness minima of continuous traits. Evol. Ecol 7:465–487. Chervitz, S. A., L. Aravind, G. Sherlock, C. A. Ball, E. V. Koonin, S. S. Dwight, M. A. Harris, K. Dolinski, S. Mohr, and T. Smith. and many others. 1998. Comparison of the complete protein sets of worm and yeast: orthology and divergence. Science 282::2022–2028. Clark, A. G. 1994. Invasion and maintenance of a gene duplication. Proc. Natl. Acad. Sci. USA 91:2950–2954. Crow, K. D., P. F. Stadler, V. J. Lynch, C. Amemiya, and G. P. Wagner. 2006. The “fishspecific” hox cluster duplication is coincident with the origin of teleosts. Mol. Biol. Evol 23::121–136. CrossRef, PubMed Daubin, V. and N. A. Moran. 2004. Comment on “the origins of genome complexity.”. Science 306:978. Dermitzakis, E. T. and A. G. Clark. 2001. Differential selection after duplication in mammalian developmental genes. Mol. Biol. Evol 18:557–562. Dieckmann, U. and M. Doebeli. 1999. On the origin of species by sympatric speciation. Nature 400:354–357. CrossRef, PubMed Dieckmann, U. and R. Law. 1996. The dynamical theory of coevolution: a derivation from stochastic ecological processes. J. Math. Biol 34:579–612. Doebeli, M. 1996. A quantitative genetic competition model for sympatric speciation. J. Evol. Biol 9:893–909. Force, A., M. Lynch, F. B. Pickett, A. Amores, Y. Yan, and J. Postlethwait. 1999. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151:1531–1545. PubMed Geritz, S. A H. and E. Kisdi. 2000. Adaptive dynamics in diploid, sexual populations and the evolution of reproductive isolation. Proc. R. Soc. Lond. B 267:1671–1678. Geritz, S. A H., E. Kisdi, G. Meszena, and J. A J. Metz. 1998. Evolutionarily singular strategies and the adaptive growth and branching of the evolutionary tree. Evol. Ecol 12:35–57. Hammerstein, P. 1996. Darwinian adaptation, population genetics and the streetcar theory of evolution. J. Math. Biol 34:511–532. Holt, R. A., G. M. Subramanian, A. Halpern, G. G. Sutton, R. Charlab, D. R. Nusskern, P. Wincker, A. G. Clark, J. M C. Ribeiro, and R. Wides. and many others. 2002. The genome sequence of the malaria mosquito Anopheles gambiae. Science 298::129–149. CrossRef, PubMed Hughes, A. L. 1994. The evolution of functionally novel proteins after gene duplication. Proc. R. Soc. Lond. B 256:119–124. Hughes, A. L. 1999. Adaptive evolution of genes and genomes. Oxford Univ. Press, New York. Hurst, L. D. and J. P. Randerson. 2000. Dosage, deletions and dominance: simple models of the evolution of gene expression. J. Theor. Biol 205:641–647. Johnson, L. J. and J. F. Brookfield. 2003. Evolution of spatial expression pattern. Evol. Dev 5:593–599. Kisdi, E. 2001. Long-term adaptive diversity in Levene-type models. Evol. Ecol. Res 3:721–727. Kisdi, E. and S. A H. Geritz. 1999. Adaptive dynamics in allele space: evolution of genetic polymorphism by small mutations in a heterogeneous environment. Evolution 53:993–1008. Lander, E. S., L. M. Linton, B. Birren, C. Nusbaum, M. C. Zody, J. Baldwin, K. Devon, K. Dewar, M. Doyle, and W. FitzHugh. and many others. 2001. Initial sequencing and analysis of the human genome. Nature 409:860–921. CrossRef, PubMed Lynch, M. and J. S. Conery. 2000. The evolutionary fate and consequences of duplicate genes. Science 290:1151–1155. CrossRef, PubMed Lynch, M. and J. S. Conery. 2003a. The evolutionary demography of duplicate genes. J. Struct. Funct. Genomics 3:35–44. Lynch, M. and J. S. Conery. 2003b. The origins of genome complexity. Science 302::1401– 1404. CrossRef, PubMed Lynch, M. and J. S. Conery. 2004. Response to comment on “the origins of genome complexity.”. Science 306:978. Lynch, M. and A. Force. 2000. The probability of duplicate gene preservation by subfunctionalization. Genetics 154:459–473. PubMed Lynch, M., M. O'Hely, B. Walsh, and A. Force. 2001. The probability of preservation of a newly arisen gene duplicate. Genetics 159:1789–1804. Metz, J. A J., S. A H. Geritz, G. Meszena, F. J A. Jacobs, and J. S. van Heerwaarden. 1996. Adaptive dynamics, a geometrical study of the consequences of nearly faithful reproduction. Pp. 183–231 in S. J. van Strien and S. M. Verduyn Lunel, eds. Stochastic and spatial structures of dynamical systems. North-Holland, Amsterdam. Notebaart, R. A., M. A. Huynen, B. Teusink, R. J. Siezen, and B. Snel. 2005. Correlation between sequence conservation and the genomic context after gene duplication. Nucleic Acids Res 33::6164–6171. Nowak, M. A., M. C. Boerlijst, J. Cooke, and J. M. Smith. 1997. Evolution of genetic redundancy. Nature 388:167–171. Ohno, S. 1970. Evolution by gene duplication. Springer-Verlag, Berlin. Ohta, T. and G. A. Dover. 1983. Population genetics of multigene families that are dispersed into two or more chromosomes. Proc. Natl. Acad. Sci. USA 80:4079–4083. Otto, S. P. and P. Yong. 2002. The evolution of gene duplicates. Adv. Genet 46:451–483. Phillips, P. C. and N. A. Johnson. 1998. The population genetics of synthetic lethals. Genetics 150:449–458. Piatigorsky, J. and G. Wistow. 1991. The recruitment of crystallins: new functions precede gene duplication. Science 252:1078–1079. Proulx, S. R. and P. C. Phillips. 2005. The opportunity for canalization and the evolution of genetic networks. Am. Nat 165::147–162. CrossRef Salazar-Ciudad, I., S. A. Newman, and R. V. Sole. 2001. Phenotypic and dynamical transitions in model genetic networks. I. Emergence of patterns and genotype-phenotype relationships. Evol. Dev 3:84–94. Spaethe, J. and A. D. Briscoe. 2004. Early duplication and functional diversification of the opsin gene family in insects. Mol. Biol. Evol 21:1583–1594. CrossRef, PubMed Spofford, J. B. 1969. Heterosis and the evolution of duplications. Am. Nat 103:407–432. Van Dooren, T. J. 2000. The evolutionary dynamics of direct phenotypic overdominance: emergence possible, loss probable. Evolution 54:1899–1914. BioOne von Dassow, G., E. Meir, E. M. Munro, and G. M. Odell. 2000. The segment polarity network is a robust developmental module. Nature 406:188–192. Wagner, A. 1999. Redundant gene functions and natural selection. J. Evol. Biol 12:1–16. Walsh, B. 1987. Sequence-dependent gene conversion: Can duplicated genes diverge fast enough to escape conversion? Genetics 117:543–557. PubMed Walsh, B. 2003. Population-genetic models of the fates of duplicate genes. Genetica 118:279– 294. Walsh, J. B. 1995. How often do duplicated genes evolve new functions? Genetics 139:421–428. PubMed Young, J. M., B. M. Shykind, R. P. Lane, L. Tonnes-Priddy, J. A. Ross, M. Walker, E. M. Williams, and B. J. Trask. 2003. Odorant receptor expressed sequence tags demonstrate olfactory expression of over 400 genes, extensive alternate splicing and unequal expression levels. Genome Biol 4:R71. 1 Present address: Department of Ecology, Evolution and Organismal Biology, Iowa State University, 253 Bessey Hall, Ames, Iowa 50011 Login If you have a BioOne account, or have purchased access to this article, log in below. Email: Password: Remember me | Forgot Your Password? Log In or Register Now Login via OpenAthens Contact your librarian for assistance with OpenAthens authentication. List of OpenAthens registered sites. Login via your institution (Shibboleth) Select Purchase Instant Access Instant Access is not available for this title. Find a Subscribing Institution If you believe you should have access to this article via your institution, please visit your library's website or contact your librarian for access information. BioOne Participating Institutions Search Criteria Author: Article or Chapter Title: Abstract: All: DOI: Figure & Table Captions: Refine By All Content in BioOne Only content I can access Select Title(s) All journals Date Range From: Month To: Month Submit Clear BioOne is the product of innovative collaboration between scientific societies, libraries, academe and the private sector. 21 Dupont Circle NW, Suite 800, Washington, DC 20036 • Phone 202.296.1605 • Fax 202.872.0884 Terms of Use | Privacy Policy Copyright © 2017 BioOne All rights reserved