* Your assessment is very important for improving the workof artificial intelligence, which forms the content of this project
Download Problem Set 3 Grader: Mayra
Protein moonlighting wikipedia , lookup
Epigenetics of diabetes Type 2 wikipedia , lookup
Long non-coding RNA wikipedia , lookup
Pathogenomics wikipedia , lookup
Genome (book) wikipedia , lookup
Designer baby wikipedia , lookup
Genomic imprinting wikipedia , lookup
Minimal genome wikipedia , lookup
Polycomb Group Proteins and Cancer wikipedia , lookup
Epigenetics of human development wikipedia , lookup
Biology and consumer behaviour wikipedia , lookup
Site-specific recombinase technology wikipedia , lookup
Therapeutic gene modulation wikipedia , lookup
Mir-92 microRNA precursor family wikipedia , lookup
Artificial gene synthesis wikipedia , lookup
Nutriepigenomics wikipedia , lookup
Microevolution wikipedia , lookup
Genome evolution wikipedia , lookup
Problem Set 3 Due Feb. 24, 2011 Grader: Cory (ctobin@caltech) Office hours: Kerckhoff Library (2nd floor) Mon Wed 1-2p Note: Do not use the Internet to answer these questions. It is good practice for the final, which is open book and notes but no Internet. 1. Which tissues are involved in neural crest induction? Is there a way to induce neural crest in the absence of one of these tissues? 2. Is the migration path of trunk neural crest based on intrinsic factors in the neural tube or is migration segmentation imposed by somites? How would you test this? 3. A theory in evolutionary development postulates that the insect hexapod body plan evolved from crustacean-like ancestors. a. Look at the figure below and propose a theory to explain how such changes in homeotic gene expression can give rise to a hexapod body plan. Would expression changes of Ubx and abdA alone account for the shift to a hexapod body plan or would there need to be other changes to one or both of these genes as well? b. You want to know if the Drosophila and Artemia homeotic genes have a new function or if the change in the expression pattern is enough to cause a change to a hexapod body plan. You decide to make transgenic flies which either have a DmUbx or a AfUbx expressed in the thorax, where normally only Antp is expressed, using an arm-Gal4 construct (arm is thorax specific promoter). You find that both Ubx proteins are able to induce abdominal features in the thoracic segments. You also observe that DmUbx is 90 % better at suppressing leg development than AfUbx. What do these finding suggest? Dm= Drosophila melanogastar Af = Artemia franciscana c. Describe how DmUbx might suppress leg formation. Design an experiment to uncover the molecular target of this new leg suppressing function. You do not need to name specific targets. d. Design an experiment to investigate which changes in the Ubx gene are responsible for this difference in the ability to suppress leg formation. The genomes of both organisms have been sequenced so you have access to genome and protein sequence information. 4. There is evidence that suggests neural crest fate is determined before they migrate to their final location, but there is contradicting evidence that suggests their fate is determined by their environment. How is this possible? Briefly describe some of the evidence that supports each view.