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Mode of Inheritance Genotype and Phenotype Dominant/Recessive Traits Polygenic Traits Multiple Allelic Traits Dominance Has Degrees Sex-Linked Traits HUMAN INHERITANCE All human phenotypic characters require the interaction of many loci Possible modes of inheritance: Mendelian inheritance Polygenic (Quantitative) inherit Mendelian inheritance Particular genotype at one locus is both necessary and sufficient for the character to be expressed TERMS: locus: the location of a gene on a chromosome Allele: Different forms of the same gene, at the same locus on a pair of homologous chromosomes Dominant alleles are given capital (uppercase) letters e.g. A,H.B etc. Recessive alleles are given small (lower case) letters e.g. a,h,b etc Number of traits with simple modes of inheritance HOW MANY LOCI? HUMAN HAPLOID GENOME ~ 3 billion basepairs 20-25,000 genes in human genome > 100,000 BP PER GENE? average protein ~ 500-1000 a.a. THEREFORE: lots of non-coding material ALLELIC VARIATION MUTANT = "abnormal" or "defective" allele [“mutant” should correctly be applied to a new allele arising by mutation] VARIANT = alternative rare alleles POLYMORPHISM = two or more alleles at “significant” frequency (second allele with frequency greater than 0.01) Genotype Genotype: the genes present in an individual for a given trait or characteristic (or represents the actual genes of an individual) We have two copies of every gene (one maternal allele, one paternal allele) if the two alleles of a gene are the same the individual is said to be homozygous if both alleles are recessive alleles the individual is homozygous recessive if both alleles are dominant the individual is homozygous dominant if the two alleles are different (i.e. one dominant and one recessive allele) the individual is heterozygous Phenotype Phenotype: The physical appearance of the individual or physical trait (e.g., red hair). Individuals with the homozygous dominant genotype have a dominant phenotype Individuals with the homozygous recessive genotype have a recessive phenotype Individuals with the heterogeneous genotype have a dominant phenotype Dominant/Recessive Traits Forming the Gametes During oogenesis and spermatogenesis (collectively, gametogenesis), chromosome number is reduced to half, and each gene pair for a trait is separated, so that the offspring receives one gene for each trait from each parent. Figuring the Odds A parent who is homozygous dominant or homozygous recessive for a trait can pass on only one type of gamete in each case. Heterozygous parents can pass on either the dominant or the recessive gene for a given trait. A Punnett square is useful for determining the possible outcomes of a genetic cross. EXAMPLE Ear lobes E dominant allele for unattached ear lobes e Recessive allele for attached ear lobes (in any example always say what the letters represent) genotype EE dominant phenotype unattached ear lobes genotype ee recessive phenotype attached ear lobes genotype Ee dominant phenotype unattached ear lobes A Punnett square Example 1 Heterozygous - by Heterozygous cross Egg E Sperm e E EE Ee e Ee ee Phenotypic Ratio 3:1 Phenotypes Unattached earlobes Attached earlobes A cross of the gametes of two heterozygotes results in a 25% chance that the offspring will be homozygous recessive, a 50% chance that the offspring will be heterozygous, and a 25% chance that the offspring will be homozygous dominant. Each offspring has a 25% chance of being homozygous recessive or of being homozygous dominant. Genotypic ratio: 1:2:1 1 EE: 2Ee : 1ee Mother E e Father E EE Ee e Ee ee Example 2 Heterozygous - by homozygous recessive cross Mother Father E e e e Ee Ee ee ee Give phenotypes of parents Give genotype of parents State gametes produced Make punnet square Genotypic Ratio 1:1 1 Ee : 1 ee Phenotypic Ratio 1:1 1 Unattached ear lobes : 1 attached ear lobes 1 dominant phenotype: 1 recessive phenotype A cross of the gametes of two individuals who are both homozygous for a trait results in a …………..of having an offspring who is homozygous for the trait. 100% chance Inherited genetic diseases Autosomal dominant diseases Autosomal recessive diseases X-linked recessive diseases Autosomal dominant inheritance All affected individuals should have an affected parent Both sexes should be equally affected Roughly 50% of the offspring of an affected individual should also be affected Huntington’s disease and Neurofibromatosis. Chromosome 17 Neurofibromatosis Neurofibromatosis is inherited as an autosomal dominant. People with this condition develop benign neurofibromas under the skin and in various organs. The effects can range from mild to severe, and some neurological impairment if possible. The gene for this trait is a nested gene on chromosome 17 Chromosome 4 Huntington Disease Huntington disease is also inherited as an autosomal dominant and is characterized by progressive neurological degeneration of brain cells, Further, it is a late acting gene, and often is diagnosed after the person has reproduced The gene causing Huntington disease was cloned in 1993, and a marker is now available The gene is a nucleotide triplet repeat (to over 100 times), and the degree of the repeat appears to be related to severity and age of onset of symptoms No treatment exists, and death occurs a decade or so after the symptoms appear. Most genetic diseases are inherited as autosomal recessive traits Inborn errors of metabolism typically result in prenatal or early death Autosomal Recessive Inheritance Usually there is no previous family history The most likely place to find a second affected child is a sibling of the first Autosomal recessive Inbreeding increases the chance of observing an autosomal recessive condition E.g. Cystic fibrosis, sickle cell disease, Tay Sachs disease and PKU. Tay-Sachs Disease Tay-Sachs disease is inherited as an autosomal recessive. A lysosomal enzyme is missing, which results in improper lipid metabolism in cells, particularly those of the nervous system Between four and six months of age, an affected infant shows neurological impairment. The child gradually becomes blind, helpless, and paralyzed, and usually dies by age four. Tay-Sachs gene is located on chromosome 15. This disease is most prevalent in Jewish people from central and eastern European descent. Chromosome 7 Cystic Fibrosis It is the most common lethal genetic disease among Caucasians. Mucus in the lungs and digestive tract is thick and viscous, making breathing and digestion difficult The cystic fibrosis gene is located on chromosome 7 Chromosome 12 Phenylketonuria (PKU) It is the most commonly inherited metabolic disorder to affect nervous system development . The PKU gene is located on chromosome 12 Polygenic Traits Polygenic traits are those governed by more than one gene pair. Several pairs of genes may be involved in determining phenotype. Skin Color: The inheritance of skin color, determined by an unknown number of gene pairs, is a classic example of polygenic inheritance. Polygenic Disorders Many human traits, like allergies, schizophrenia, and cleft lip, appear to be inherited as polygenic traits. The expression of some genes is subject to environmental influences (e.g., a child allergic to ragweed will never express that trait while living in the Arctic). Multiple Allelic Traits In multiple alleles, more than two alternative types exist for a gene pair. ABO blood grouping is an example. ABO Blood Types The ABO blood grouping represents surface marker proteins on red blood cells. A person can have a gene for an A marker or a B marker, which are codominant, or lack an A or B marker, designated type O, which is recessive. Human ABO blood types can then be type A (which can be AA or AO), type B (BB or BO), type AB (AB), or type O (OO). Blood Types There are three different alleles for human blood type: Blood types For simplicity, we call these IA A IB B i O The ABO blood group is a multiple allele at a single locus Persons with type A blood have the allele IA which codes for the synthesis of a glycoprotein (antigen A) on the surface of the red blood cells Persons with the allele IB produce antigen B; persons with both alleles produce both antigens (AB) Persons with the allele io do not produce either antigen; this allele is recessive to both A and B Other blood "types" are inherited independently Use of blood types can only disprove paternity Today, DNA fingerprinting and tissue typing are more accurate tests Since there are three different alleles, there are a total of six different genotypes at the human ABO genetic locus. Allele from Allele from Genotype of Blood types of the mother the father offspring offspring A A AA A A A B B O A AB* AO AB* AB A AB B B B O BB BO B B O O OO O Rh alleles control the expression of other red blood cell antigens The Rh allele is named for the rhesus monkey The Rh system includes about 8 antigens; antigen D is the most important The majority of persons of western European descent are Rh positive (possessing antigen D on their red blood cells) Rh positive persons are homozygous dominant or heterozygous Rh incompatibility may occur when a woman is Rh negative and the fetus is Rh positive Erythroblastosis fetalis results from a sensitized pregnant woman’s antibodies passing into the fetal blood, and may cause fetal death After a first childbirth, women at risk are now given a RhoGAM shot to prevent sensitization Exceptions to clear cut Mendelian inheritance Lethal alleles Incomplete dominance Codominance Silent alleles Dominance Has Degrees Patterns of dominance often go beyond simple dominant or recessive traits. a. Codominance means that both alleles are expressed (type AB blood). b. Incomplete dominance is exhibited when the heterozygote shows not the dominant trait but an intermediate phenotype, representing a sort of blending of traits (e.g., skin color or hair type). Sickle-Cell Disease Sickle-cell disease is an example of incomplete dominance. An individual with two genes for normal hemoglobin has normal hemoglobin. A heterozygote has a normal gene and a gene for sickled hemoglobin. An individual with two sickling genes has sickle-cell disease. What may have maintained this apparently detrimental gene in equatorial Africa is that heterozygotes for this trait have a marked resistance to the malarial parasite prevalent in the region. Sex-Linked Traits Sex-linked traits are genes (traits) carried most frequently on the X chromosome. (The Y chromosome is too small.) X-Linked Alleles In X-linked traits, the gene is carried on the X chromosome. Since males have only one copy of the X chromosome, they show the phenotype for the allele they possess and are thus much more likely than females to show a recessive trait. A female must have two copies of a recessive trait (one on each X chromosome) to display it. If a female has only one copy of a recessive gene, she is said to be a carrier and will pass the trait on to 50% of her sons, on average. Some Disorders Are X-Linked A. Color Blindness Three types of cones are in the retina: those that detect red, those that detect green, and those that detect blue. Genes for blue cones are autosomal; those for red and green cones are on the X chromosome. Males are much more likely to have red/green colorblindness than are females. B. Muscular Dystrophy Duchenne muscular dystrophy is X-linked and is characterized by progressive muscle deterioration during childhood. . C. Hemophilia Hemophilia (bleeder's disease) can be traced to Queen Victoria of England and is characterized by the absence or minimal presence of one of two different clotting factors. Again, males are much more prone to this trait than females and often require blood transfusions. Hemophilia A is the most common form of hemophilia Hemophilia A was common among the royal families in Europe Currently, hemophiliacs have a high HIV infection rate due to the previous treatment by blood transfusions and injections of Factor VIII Some Traits Are Sex-Influenced Some traits carried on autosomes such as male-pattern baldness, can be influenced by gender. In this instance, the male hormone testosterone is the culprit. Some genetic diseases are inherited as X-linked recessive diseases Hemophilia A is an X-linked recessive disorder that affects blood clotting Hemophilia A is the most common form of hemophilia Hemophilia A was common among the royal families in Europe Currently, hemophiliacs have a high HIV infection rate due to the previous treatment by blood transfusions and injections of Factor VIII Genetic counselling Genetic counselors educate people about genetic diseases Genetic counselors can only give the probability of a certain condition occurring in the offspring The probabilities remain constant with each sequential pregnancy Pedigree Charts Pedigree charts are a way of making a family tree and indicate which individuals are affected by a trait. Since recessive and dominant traits exhibit different patterns of inheritance, pattern of inheritance can be partially determined by examining a pedigree chart. Genetic counselors use pedigree charts and a variety of other means to predict the likelihood of two parents producing an offspring with a genetic disorder. Some tests can be run during pregnancy. Both genetic and environmental factors cause birth defects Birth defects are those that are present at birth, and may be genetic or not Maternal rubella and alcohol consumption may cause non-genetic birth defects Some birth defects can be detected before birth Amniocentesis Amniocentesis involves sampling the fluid of the amniotic sac, which contains shed epidermal cells of the fetus Chorionic villus sampling (CVS) samples fetal cells of the placenta and can be done earlier in pregnancy Amniocentesis Amniocentesis involves sampling the fluid of the amniotic sac, which contains shed epidermal cells of the fetus Positioning of the needle is done via ultrasound imaging After several weeks of laboratory culture, cells of the fetus can be visualized Karyotyping can indicate Down syndrome and other aneuploidies The amniotic fluid may also be chemically analyzed to detect disorders such as Tay-Sachs disease and spina bifida Other tests require the use of genetic engineering methods The main drawback of amniocentesis is that it detects mostly incurable defects and can be done relatively late in the pregnancy Gene replacement therapy is being developed for several genetic diseases One strategy involves introduction of a normal gene into a fertilized egg Another strategy is to introduce the normal gene into body cells of a diseased person This is the focus of most current research, and viruses are often used as vectors The first gene replacement therapy was for persons with severe combined immune deficiency syndrome (SCIDS), and has been relatively successful Much natural variation exists in the human population Humans have several genetically determined blood groups Quantitative traits are controlled by polygenes Many common physical characteristics are inherited The Human Genome Project is studying all human genes The Human Genome Project began in the late 1980s The goal is to sequence the 3 billion base pairs in the human haploid genome It was initially hoped to be completed by the year 2003, but that is unlikely