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Patterns of Inheritance Chapter 12 1 Terms • Allele – variations of a gene • Every individual has 2 alleles for the same gene • On homologous chromosomes (1came from mom, 1 came from dad) • Homozygous – same allele • Example – BB or bb • Heterozygous – different alleles • Example - Bb • Dominant – trait that will be expressed • Example – B • Recessive – trait that will only be expressed when in homozygous form • Example - b 2 Mystery of heredity • Before the 20th century we knew: – Heredity occurs within species – Traits are transmitted directly from parent to offspring • Heredity thought to be fluid and blended • Problem: If blending occurs why don’t all individuals look alike? 3 Gregor Mendel Chose to study heredity in pea plants because: 1. Other research showed that pea hybrids could be produced 2. Many pea varieties were available 3. Peas are small plants and easy to grow 4. Peas can self-fertilize or be cross-fertilized 1.Self-fertilization – male and female parts on same flower so there will be self fertilization if flower not disturbed 4 • Mendel's Method: 1. Produce true-breeding strains for each trait • Example – pea plants with all purple flowers • OR • Pea plants with all white flowers 2. Cross-fertilize true-breeding strains • Example – cross purple flower pea plant with white flower pea plant 3. Allow the hybrid offspring to self-fertilize for several generations… …Then count the number of offspring showing each form of the trait 5 6 Monohybrid crosses • Cross to study 2 variations of a single trait • Example – pea color (yellow or green) • Mendel produced true-breeding pea strains for 7 different traits 7 Mendel's 7 pea traits Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Dominant Recessive F2 Generation Dominant Recessive F2 Generation 5. Pod Shape 1. Flower Color 882 Inflated: 299 Constricted 705 Purple: 224 White X X 2.95:1 3.15:1 Purple Inflated White Constricted 6. Flower Position 2. Seed Color 6022 Yellow: 2001 Green 651 Axial: 207 Terminal X X 3.01:1 Yellow 3.14:1 Green Axial Terminal 3. Seed Texture 7. Plant Height 5474 Round: 1850 Wrinkled 787 T all: 277 Short X 2.96:1 Round X Wrinkled 2.84:1 Tall 4. Pod Color Short 428 Green: 152 Yellow X 2.82:1 Green Yellow 8 F1 generation • First filial generation • Offspring produced by crossing 2 truebreeding strains • Example – cross pea plant that has green peas with one that has all yellow peas • For every trait Mendel studied, all F1 plants resembled only 1 parent – Referred to the trait shown in F1 as dominant – Alternative trait was recessive (hidden) 9 F2 generation • Offspring resulting from the self-fertilization of F1 plants • The recessive trait had reappeared among some F2 individuals • Counted proportions of traits – Always found about 3:1 ratio • (3 dominant to 1 recessive) 10 3:1 is actually 1:2:1 • F2 plants • ¾ plants with the dominant form • ¼ plants with the recessive form • The dominant to recessive ratio was 3:1 • Mendel discovered the ratio is actually: • 1 true-breeding dominant plant • 2 not-true-breeding dominant plants • 1 true-breeding recessive plant 11 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Truebreeding Purple Parent Truebreeding White Parent Parent generation Cross-fertilize Purple Offspring F1 generation Self-cross Purple Dominant Purple Dominant Purple Dominant White Recessive Truebreeding Non-truebreeding Non-truebreeding Truebreeding Self-cross Self-cross Self-cross Self-cross F2 generation (3:1 phenotypic ratio) F3 generation (1:2:1 genotypic ratio) 12 Conclusions • His plants did not show intermediate traits – Each trait is intact, discrete • For each pair, one trait was dominant, the other recessive • Pairs of alternative traits examined were segregated among the progeny of a particular cross • Alternative traits were expressed in the F2 generation in the ratio of ¾ dominant to ¼ recessive 13 This results in Mendel's model: 1. Parents transmit discrete factors (genes) 2. Each individual receives one copy of a gene from each parent (total per indiv.= 2 copies) 3. Not all copies of a gene are identical – Different versions of a gene are different ALLELES of that gene • Homozygous – 2 of the same allele • Heterozygous – different alleles Alleles remain discrete – no blending 4. 5. Presence of allele does not guarantee expression • If Dominant allele – expressed • If Recessive allele – can be hidden by dominant allele 14 • Genotype – The set of alleles an individual contains • Phenotype – physical appearance 15 Principle of Segregation • Two alleles for a gene separate during gamete formation and are rejoined at random, one from each parent, during fertilization • Physical basis for allele segregation is the behavior of chromosomes during meiosis • Mendel had no knowledge of chromosomes or meiosis – had not yet been described 16 Punnett square • Cross purple-flowered plant with white-flowered plant – P is dominant allele – purple flowers – p is recessive allele – white flowers • True-breeding white-flowered plant is pp – Homozygous recessive • True-breeding purple-flowered plant is PP – Homozygous dominant • Pp is heterozygote purple-flowered plant 17 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. P p P p pp 1. p + p = pp. P P p pP 3. p + P = pP. a. P p P Pp p pp 2. P + p = Pp. p P p Pp P PP Pp pp p pP pp 4. P + P = PP. 18 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. White parent pp p p Purple parent PP P Pp Pp Pp Pp P F1 generation Purple heterozygote Pp p P Purple heterozygote Pp P PP Pp pP pp p F2 generation 3 Purple:1 White (1PP: 2Pp :1pp ) b. 19 • This type of inheritance pattern is SIMPLE DOMINANCE – One primary gene controls phenotype – Dominant or recessive alleles • Pedigree analysis is used to track inheritance patterns in Human families • Example: juvenile glaucoma (dominant disease) – Disease causes degeneration of optic nerve leading to blindness – Dominant trait appears in every generation • Unless completely removed from a lineage 20 21 • Example of a Recessive disease pedigree – Albinism – Condition in which the pigment melanin is not produced – Pedigree for form of albinism due to a nonfunctional allele of the enzyme tyrosinase – Males and females affected equally (autosomal) – Most affected individuals have unaffected parents 23 Dihybrid crosses • Examination of 2 separate traits in a single cross • To test if the 2 traits are connected • First, Mendel bred true-breeding lines for 2 traits: RRYY x rryy • The F1 generation of a dihybrid cross (RrYy) shows only the dominant phenotypes for each trait 25 The F1 self-fertilizes • RrYy x RrYy • The F2 generation shows all four possible phenotypes in a set ratio – 9:3:3:1 R is Round (dominant) – 9 Round Yellow – 3 Round green – 3 wrinkled Yellow – 1 wrinkled green r is wrinkled (recessive) Y is Yellow (dominant) y is green (recessive) 26 Principle of independent assortment • In a dihybrid cross, the alleles of two different genes assort independently of one another • Independent alignment of different homologous chromosome pairs during metaphase I leads to the independent segregation of the different allele pairs 29 Probability • Rule of addition – Probability of either of 2 exclusive events occurring is the sum of their individual probabilities • The probability of getting this OR that. • When crossing Pp x Pp, the probability of producing PP or pp offspring is – probability of obtaining Pp (1/4), PLUS probability of obtaining pp (1/4) –¼ + ¼ = ½ 30 • Rule of multiplication – most useful in genetics – Probability of 2 independent events occurring simultaneously is the product of their individual probabilities • The probablility of getting this AND that. • When crossing Pp x Pp, the probability of obtaining pp offspring is… – Probability of obtaining p from father = ½ – Probability of obtaining p from mother = ½ – Probability of pp = ½ x ½ = ¼ 31 Testcross • Cross used to determine the genotype of an individual with dominant phenotype – But the genotype is unknown (Pp or PP?) • Cross the individual with unknown genotype (e.g. P_) with a homozygous recessive (pp) • Phenotypic ratios among offspring are different, depending on the genotype of the 32 unknown parent Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Homozygous dominant Homozygous P recessive Dominant Phenotype (unknown genotype) P p Pp Pp Alternative 1: All offspring are purple and the unknown flower is homozygous dominant (PP) Heterozygous dominant Homozygous recessive If PP If Pp then then PP or Pp P p p Pp pp Alternative 2: Half of the offspring are white and the unknown flower is heterozygous (Pp) 33 Extensions to Mendel • Mendel’s model of inheritance assumes SIMPLE DOMINANCE – Each trait is controlled by a single gene – Each gene has only 2 alleles – There is a clear dominant-recessive relationship between the alleles • However, most genes do not meet these criteria 34 Polygenic inheritance • Occurs when multiple genes are involved in controlling the phenotype of a trait • The phenotype is an accumulation of contributions by multiple genes • These traits show continuous variation and are referred to as quantitative traits – For example – human height – Histogram shows normal distribution 35 Number of Individuals Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. 30 20 10 0 0 5′0″ 5′6″ Height 6′0″ ' (top): From Albert F. Blakeslee, “CORN AND MEN: The Interacting Infl uence of Heredity and Environment—Movements for Betterment of Men, or Corn, or Any Other Living Thing, One-sided Unless Th ey Take Both Factors into Account,” Journal of Heredity, 1914, 5:511-8, by permission of Oxford University Press 36 Pleiotropy • Refers to an allele which can effect more than one phenotype • Pleiotropic effects are difficult to predict, because a gene that affects one trait often performs other, unknown functions • This can be seen in human diseases such as cystic fibrosis or sickle cell anemia – Multiple symptoms can be traced back to one defective allele 37 Multiple alleles • May be more than 2 alleles for a gene in a population • ABO blood types in humans – 3 alleles • Each individual can only have 2 alleles • Number of alleles possible for any gene is constrained, but usually more than two alleles exist for any gene in an outbreeding population 38 • Incomplete dominance – Heterozygote is intermediate in phenotype between the 2 homozygotes – Red flowers x white flowers = pink flowers • Codominance – Heterozygote shows some aspect of the phenotypes of both homozygotes – Type AB blood 39 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. CRCR CWCW Parent generation Cross-fertilization CRCW F1 generation CR CW CRCR CRCW CRCW CWCW CR F2 generation CW 1:2:1 CRCW: CWCW CRCR: 40 Human ABO blood group • The system demonstrates both – Multiple alleles • 3 alleles of the I gene (IA, IB, and i) – Codominance • IA and IB are dominant to i but codominant to each other 41 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Alleles IAIA, IAi (IA dominant to i) IBIB, IBi (IB dominant to i) IAIB (codominant) ii (i is recessive) Blood Type Sugars Exhibited Donates and Receives A Galactosamine Receives A and O Donates to A and AB B Galactose Receives B and O Donates to B and AB Both galactose and galactosamine Universal receiver Donates to AB None Receives O Universal donor AB O 42 Environmental influence Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. • Coat color in Himalayan rabbits and Siamese cats – Allele produces an enzyme that allows pigment production only at temperatures below 30oC Temperaturebelow 33º C, tyrosinase active, dark pigment Temperature above 33º C, tyrosinase inactive, no pigment 43 © DK Limited/Corbis Epistasis • Behavior of gene products can change the ratio expected by independent assortment, even if the genes are on different chromosomes that do exhibit independent assortment • One gene has effect on another gene if it’s present • Coat color in Labrador retreivers 44