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Review guide – Trimester 1 Finals General Biology – 2012 Chapter 1: Section 1.1 Vocabulary Biosphere, ecosystem, community, population, organism, organ system, organs, tissues, cells, organelles, molecules Producers, consumers, decomposers, inflow, recycling, nutrients, energy Prokaryotic cell, eukaryotic cell Order, regulation, growth/development, energy use, response, reproduction, evolution Species, kingdoms, Domains, Bacteria, Archaea, Eukarya Concepts Identify and describe the levels of organization 1.6 Natural Selection, theories 1.7 Inductive reasoning, deductive reasoning, hypothesis, inquiry Falsifiable, control, controlled experiment, variables Review exercises #1-17 on pp. 13 - 14 Explain the three key observations that led to Darwin’s theory of natural selection. How are natural selection and adaptation related? Describe how inquiry is used in science 1.2 1.3 1.4 1.5 1.8 Distinguish between flow of energy and flow of chemicals in ecosystems. Explain why they differ. How are cells the structural and functional unit of life? Define and relate vocabulary to requirements of living organisms. Distinguish among the three domains – how are they organized. Be able to explain the set up, control, and results of the experiment on the snakes described on pp. 10 - 11 Chapter 2: Section 2.1 2.2 2.3 Vocabulary Matter, element, trace elements 2.4 Atoms, neutrons, electrons, protons, nucleus, atomic number, atomic mass, isotopes Compound, molecule, atom 2.5 2.6 Chemical bonds 2.7 Ion, salt, ionic bond 2.8 Covalent bond, molecule, single, double, triple bonds Concepts Identify most common elements found in living systems. Identify examples of and role of trace elements Review basic concepts of chemistry – how atoms form molecules or compounds Know how subatomic particles make up atoms, know role of subatomic particles in behavior of atom, identify isotopes Describe examples of how isotopes are used in medicine and research How are electrons involved in bonding? What makes an atom “want” to bond? How does bonding relate to an atom’s position on the periodic table? What are characteristics of ionic compounds? Where do we find ions and ionic compounds in living systems? How are covalent bonds formed? How many electrons make up a covalent bond? Why do some atoms form 2.9 Polar covalent bond, electronegativity, nonpolar vs. polar molecules 2.10 Hydrogen bond 2.11 Cohesion, surface tension 2.12 Heat, temperature, evaporative cooling, moderate 2.13 Density 2.14 Solution, solute, solvent, aqueous solution 2.15 Base, acid, pH scale, dissociate, hydrogen ion, hydroxide ion, buffers 2.16 Acid precipitation 2.17 Chemical reactions, products, reactants, chemical properties covalent and others form ionic bonds? Distinguish between ionic and covalent bonds and how do nonpolar and polar bonds reflect the spectrum from covalent to ionic bonds? How does the shape of a water molecule contribute to the overall polarity of the molecule? Which end is negative? What are hydrogen bonds and what role do they play in molecular interactions? When will hydrogen bonds form? Explain how water is cohesive and how cohesion contributes to surface tension. What role in nature do cohesion and surface tension play? Describe all the ways water can moderate temperature. What is it about water and its hydrogen bonds that allow it to moderate temperature? Why is solid ice less dense than liquid? What does this mean for living systems? What properties of water make it a good solvent? What kinds of molecules is it most able to dissolve? What kinds of molecules will not dissolve in it? How is its role as a solvent critical to living systems? Define acids and bases in several ways – be sure to understand how one is a hydrogen acceptor and the other is a hydrogen donor. Why is water neutral? What does the pH scale really represent? How do buffers work and why are they important for living systems? What causes the build-up of acid precipitation? What effect does acid precipitation have on both a large and a small scale? Distinguish between chemical and physical properties. Demonstrate the conservation of mass in a chemical reaction. Review exercises #1-23 on pp. 30 - 31 Chapter 3: Section 3.1 3.2 3.3 3.4 Vocabulary Organic compounds, isomers, hydrocarbons, carbon skeleton Functional groups, hydrophilic, hydrophobic, phosphate group, hydroxyl group Monomers, polymers, dehydration synthesis (condensation reaction), hydrolysis, macromolecules 3.5 Carbohydrates, monosaccharides, polysaccharides, simple sugars, starches Disaccharide 3.6 3.7 Polysaccharides, starch, glycogen, Concepts Describe several properties of carbon that make it a good candidate to form the major molecules of living systems. How do functional groups add to the properties of carbon compounds? Describe and define different types of monomers for each category of organic compounds. Explain how monomers are combined to make polymers and vice versa. How is water involved in both making and breaking polymers? What is general composition of carbohydrates? What roles do carbohydrates play in different cells? What is the most common disaccharide? What two monosaccharides make it up? How do different polysaccharades made from the same cellulose 3.8 Lipids, hydrophobic, fat, triglyceride, unsaturated, saturated 3.9 Phospholipids, waxes, steroids 3.10 3.11 3.12 Anabolic steroids Proteins, amino acids Amino acids, peptide bonds, R groups, polypeptides 3.13 Denaturation 3.14 Primary structure, secondary structure, tertiary structure, quaternary structure 3.15 3.16 monomer change in their properties? Distinguish among starch, cellulose, and glycogen – what roles do they play in their cells? What is the general structure of a triglyceride? What is the difference between saturated and unsaturated fats? Where do you find saturated and unsaturated fats? Describe the functions, structures, and locations of waxes, phospholipids, and steroids. What is unique about phospholipids? What role does cholesterol play in animal cells? What are side effects of abuse of anabolic steroids? What roles do proteins play in living cells? How do the different amino acids combine to make a nearly infinite number of polypeptides? How do the properties of each amino acid contribute to the properties of the final protein? What is meant by saying that a protein’s shape determines its function? What happens when a protein is denatured? What kinds of things can cause a protein to denature? Describe how each level determines the next level of shape and how that contributes to the final product. What can happen if just one amino acid is changed? Why? Nucleic acid, DNA, RNA, genes, nucleotides, nitrogenous bases, double helix, sugar-phosphate backbone, complementary pairs Review exercises #1 – 19 on pp. 48 and 49 What are differences between RNA and DNA? How are the two DNA chains held together? What rule is always followed to pair the nitrogenous bases? What is a gene? Vocabulary Light microscope, SEM, TEM, magnification, resolution, cell theory Concepts Compare and contrast light microscope to SEM and TEM. What are advantages and disadvantages of each? What is difference between magnification and resolution? How do you determine magnification in a compound microscope? What is the relationship between field of view and magnification? Explain how the ratio of surface area to volume affects the limits of a cell size. Have a general idea of the relative size and scale of various cells and organisms. Describe basic structure of prokaryotic cells. What elements does it have that meet the requirements of life? What are examples of prokaryotes? What is the advantage of organelles? Compare and contrast plant to animal cells. Be able to label plant and animal cells. Have a general understanding of the contents of the nucleus and how its membranes allow it selective communication with the rest of the cell. Chapter 4: Section 4.1 4.2 4.3 4.4 4.5 Prokaryotic, eukaryotic, plasma membrane, ribosomes, nucleoid region, cell wall, capsule, pili, flagella Cytoplasm, organelles, cellular metabolism Nucleus, chromatin, chromosome, nuclear envelope, pores, nucleolus 4.6 4.7 Endomembrane system, vesicles, endoplasmic reticulum Smooth ER 4.8 Rough ER, secretory protein, glycoprotein, transport vesicle 4.9 Golgi Apparatus, 4.10 Lysosomes, digestive enzymes, recycling 4.11 4.12 4.13 4.14 4.15 Vacuoles, central vacuole, contractile vacuole Endomembrane Chloroplasts, stroma, granum, intermembrane space Mitochondria, intermembrane space, christae, mitochondrial matrix 4.16 Cytoskeleton, microfilaments, intermediate filaments, microtubules 4.17 Extracellular matrix, plasmodesmata, gap junctions, tight junctions, anchoring junctions 4.18 Explain how the cell is filled with interrelated membranes and how they function to support the cell. What roles do the smooth ER play? Why would liver cells have a heavy concentration of smooth ER? What role does the SER have in muscle contraction? Explain how proteins may be made at the rough ER, feed into the ER, get packaged and sent out for further processing. What role does the Golgi play in the cell? How is it related to the rough ER and the export of materials from the cell? Describe the different functions of lysosomes. How are they formed as part of the endomembrane system? Explain how faulty lysosomes can lead to organ or organism failure. Compare and contrast the different roles the vacuoles play depending on their location. Review the entire process of making, refining, and exporting a protein through the endomembrane system. Briefly relate the structure of a chloroplast to its function. What is its primary function? Briefly relate the structure of the mitochondria to its function. What is the reason for the extensive infolded interior membrane? Distinguish among the components of the cytoskeleton. How do they each contribute to the many roles the cytoskeleton plays in the cell? Compare and contrast the types of junctions. What different roles do each have? What do you find in animal vs. plant cells? Explain the four general categories defined in the chart and how they together comprise the necessary functions for life. Be able to explain the organelles you find under each category and their contribution to that category. Review exercises #1-22 on pp. 68-69 Chapter 5: Section 5.1 5.2 5.3 Vocabulary Energy, potential energy, kinetic energy, chemical energy Thermodynamics – first and second laws, systems Endergonic, exergonic, metabolism, energy coupling, cellular respiration 5.4 ATP, phosphorylation 5.10 Selective permeability 5.11 Phospholipid, bilayer Concepts Relate the forms of energy to different examples. Explain how both laws of thermodynamics relate to energy use in living systems. How are chemical reactions categorized as exergonic or endergonic? How can the two types of reactions be coupled? How is food related to energy coupling? What is ATP used for in the cell? How are phosphorylation and hydrolysis used to make and break down ATP? What is happening to energy in the previous processes? How are membranes selectively permeable but still provide a way to organize the cell contents? Describe the orientation of the phospholipids that make up 5.12 Fluid mosaic 5.13 5.14 Receptors, signal transduction Diffusion, passive, concentration gradient 5.15 5.16 Facilitated diffusion Osmosis 5.17 Isotonic, hypotonic, hypertonic, osmoregulation, plasmolysis Active transport Exocytosis, endocytosis 5.18 5.19 a cell membrane What are membranes described as fluid mosaics? What is the “fluid” and what makes the “mosaic?” Describe all of the functions of membrane proteins Explain with a diagram or words how and why molecules will diffuse across a membrane or through a medium. How do proteins work to facilitate diffusion? When does osmosis occur and how is it different or similar to diffusion? Compare and contrast the response of animal and plant cells to immersion in solutions of different relative tonicity. When would a cell want to use active transport? Explain how vesicles can fuse with the membrane to export substances or how substances can be engulfed by a section of membrane to take in a substance. Review Exercises #1-12 p. 87 Chapters 6 and 7 overview Section 6.1 Vocabulary Photosynthesis, cellular respiration 6.2 6.3 6.6 Glycolysis, citric acid cycle, oxidative phosphorylation, chemiosmosis, ATP synthases 6.12 6.13 6.15 7.1 7.5 7.11 Fermentation, alcohol fermentation, lactic acid fermentation Biosynthesis Producers, autotrophs, photo-autotrophs Light reactions, Calvin cycle, carbon fixation Concepts How do cellular respiration and photosynthesis complement each other? What is the ultimate destination of oxygen we breathe in and what is the source of the carbon dioxide we exhale? Explain the equation for cellular respiration. Trace the general process of cellular respiration starting with glycolysis and ending with oxidative phosphorylation. Compare the amount of ATP released in glycolysis to that released in the final stage. How is fermentation an alternative to respiration? Why is it not enough to support large organisms? How is ATP also used to build molecules? Where do raw materials for new molecules come from? Why are producers critical for every ecosystem? Trace the general process of photosynthesis. Compare photosynthesis to cellular respiration.