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Anu Singh-Cundy • Gary Shin Discover Biology SIXTH EDITION CHAPTER 9 Patterns of Inheritance © 2015 W. W. Norton & Company, Inc. CHAPTER 9 Patterns of Inheritance, Part 1 THE LOST PRINCESS 9.1 Principles of Genetics: An Overview Genes determine traits Diploid cells have two copies of every gene Genotype directs phenotype Some phenotypes are controlled by dominant alleles Gene mutations are the source of new alleles Controlled crosses help us understand patterns of inheritance 9.2 Basic Patterns of Inheritance Mendel’s genetic experiments began with true-breeding pea plants Mendel inferred that inherited traits are determined by genes 9.3 Mendel’s Laws of Inheritance Mendel’s single-trait crosses revealed the law of segregation Mendel’s two-trait experiments led to the law of independent assortment Mendel’s insights rested on a sound understanding of probability CHAPTER 9 Patterns of Inheritance, Part 2 9.4 Extensions of Mendel’s Laws Many alleles display incomplete dominance The alleles of some genes are codominant A pleiotropic gene affects multiple traits Alleles for one gene can alter the effects of another gene The environment can alter the effects of a gene Most traits are determined by two or more genes Complex traits are polygenic and potentially influenced by the environment BIOLOGY MATTERS: KNOW YOUR TYPE APPLYING WHAT WE LEARNED: SOLVING THE MYSTERY OF THE LOST PRINCESS The Lost Princess • The last Russian czar and his family were executed in 1918. Could Mendelian genetics help settle persistent rumors that one of his daughters, Anastasia, had escaped the murder of the Romanov family? Humans Have Used the Principles of Inheritance for Thousands of Years to Domesticate Plants and Animals Shar-pei, one of the oldest dog breeds • The field of genetics originated in 1866 after Gregor Mendel published a paper on inheritance in pea plants. • Mendel’s work was largely ignored for 30 years before it was adopted as the foundation for modern genetics. • Genetics is the study of inherited characteristics (genetic traits) and the genes that affect those traits. Gregor Mendel (1822–1884) A Genetic Trait Is Any Inherited Characteristic of an Organism That Can Be Observed or Detected • Invariant genetic traits are the same in all individuals in a population. • Variant genetic traits come in two or more different versions, or phenotypes. • The display of a particular version of a genetic trait in a specific individual is the phenotype of that genetic trait in that individual. Diploid Cells Have Two Copies of Every Gene • • • Somatic cells (nonsex cells) in the body of plants and animals are diploid: they contain two copies of each type of chromosome, which together make up a homologous pair. Each homologous pair contains one paternal homologue and one maternal homologue. Humans have 23 pairs of homologous chromosomes, making a total of 46 chromosomes. An Allele Is a Variant Form of a Gene • Alleles are different versions of a given gene. • Allelic variation is what makes a population genetically diverse. • Mutations are the source of new alleles. • A mutation is a change in the DNA sequence of a gene. • Gene mutations occur at random. • Mutations are commonly neutral, sometimes harmful, and occasionally beneficial, to the individual. • Only mutations that are present in the gametes, or the cells that produce gametes, can be passed to offspring. Genotype Directs Phenotype • The genotype of an individual is the allelic makeup of that individual with respect to the specified genetic trait(s): – The genotype completely or partially controls an individual’s phenotype. • An individual who carries two copies of the same allele is said to be homozygous for that gene. • An individual whose genotype consists of two different alleles for a given phenotype is said to be heterozygous for that gene. The baby’s genotype for the genes shown here is rrHhDDeeGg. Some Phenotypes Are Controlled by Dominant Alleles • The allele that exerts a controlling influence on the phenotype in a heterozygote is said to be dominant. • An allele that has no effect on the phenotype when paired with a dominant allele in a heterozygote is said to be recessive. Breeding Trials Help Us Understand Patterns of Inheritance • A genetic cross is a controlled mating experiment performed to examine how a particular trait is inherited. • The parents, or P generation, are crossed to produce offspring, called the F1 generation. • Two individuals from the F1 generation are then crossed to produce the F2 generation. Mendel’s Genetic Experiments Began with True-Breeding Pea Plants • Mendel proposed that offspring inherit two separate units of genetic information (two copies of each gene), one from each parent. • Mendel used true-breeding lines of pea plants to conduct highly controlled experiments . • True-breeding, or purebred, individuals have a homogenous genotype. • Mendel crossed two lines of purebreeding plants to produce two generations of hybrid plants and recorded the phenotypic data. Mendel Began By Studying the Inheritance of Single Traits • In a single-trait cross, the experimenter tracks the inheritance of the two alleles of a single gene. • If all F2 offspring are hybrids for that one trait, as they were in all of Mendel’s experiments, this type of cross is a monohybrid cross. • For the P generation: Mendel crossed true-breeding pea plants with contrasting phenotypes for a particular genetic trait, such as flower color. • He performed many such crosses and recorded the phenotypes of the resulting F1 generation; next he crossed individuals of the F1 generation to raise the F2 generation. Mendel Observed a 3:1 Ratio of Dominant to Recessive Phenotypes in the F2 Generation Mendel’s observations: • Odds that the dominant phenotype will be seen in the F1 generation: 100 percent (4 in 4) • Odds that the recessive phenotype will reappear in the F2 generation: 1 in 4 (25 percent) • Phenotypic ratio (dominant to recessive phenotype) is 3:1 • Genotypic ratios: 1:4 (25 percent) PP 1:2 (50 percent) Pp 1:4 (25 percent) pp A Punnett Square Can Be Used to Show All the Possible Ways in Which Two Alleles Can Recombine Through Fertilization Mendel’s Single-Trait Crosses Revealed the Law of Segregation • Mendel concluded that the results were best explained by assuming that the two copies of a gene separate into different cells during the formation of egg or sperm (meiosis). • Thus, according to Mendel’s law of segregation, the two copies of a gene are separated during meiosis and end up in different gametes. • Therefore, each offspring receives one copy of the gene (one allele) from the egg and the other copy (other allele) from the sperm. Mendel’s Experiments with Two Traits (Dihybrid Crosses) • Next, Mendel sought to determine if a particular phenotype of one trait is always inherited together with a particular phenotype of a different trait. • Is the yellow seed color always inherited with the round seed shape? Or would he find combinations of phenotypes (yellow color and wrinkled shape) among the offspring that were not present in the P generation? Mendel’s question was rather like asking whether a particular eye color phenotype (say, blue eyes) always goes with a particular hair color phenotype (say, blond hair). Two Trait Cross between True-Breeding Parents: Recombinant Phenotypes Appear in the F2 Generation • Mendel crossed dihybrids, individuals that are heterozygous for two traits. • He observed two nonparental combinations of phenotypes (recombinant phenotypes) in the F2 : - Round shape; green color (RRyy and Rryy) - Wrinkled shape, yellow color (rrYY and rrYy) • The phenotypic ratios were 9:3:3:1 -9/16 dominant for both traits -3/16 dominant for seed shape, recessive for seed color -3/16 recessive for seed shape, dominant for seed color -1/16 recessive for both seed shape and color Predicting Genotypes of Gametes Produced by Dihybrids of the F1 Generation • Mendel deduced that the alleles of one gene (R/r) are sorted into gametes independently of the alleles of the other gene (Y/y). • The gametes that a dihybrid produces have genotypes that include all possible combinations: • RY, Ry, rY, and ry. Mendel’s Two-Trait Experiments Led to the Law of Independent Assortment • The law of independent assortment states that when gametes form, the two copies of any given allele are sorted independently of any two alleles of other genes. • The law of independent assortment applies to the inheritance of two genes that are physically separated on different chromosomes. The 9:3:3:1 phenotypic ratio is best explained by assuming that the alleles of one gene (RR/Rr/rr) are sorted into gametes independently of the alleles of the other gene (YY/Yy/yy). Chromosomal Basis of Mendel’s Law of Independent Assortment The random assortment of different homologous pairs explains Mendel’s law of independent assortment: the alleles (R/r) of one genetic locus on a certain pair of homologues are sorted independently of the alleles (Y/y) of another genetic locus that is located on a different pair of homologous chromosomes. What Mendel Inferred from His Breeding Experiments: A Summary 1. Alternative versions of genes (alleles) cause variation in inherited traits. 2. Offspring inherit one copy (one allele) of a gene from each parent. 3. An allele is dominant if, when paired with a different allele, it has exclusive control over an individual’s phenotype. 4. The two copies (alleles) of a gene segregate during meiosis and end up in different gametes. 5. The alleles of one gene (such as R/r) are sorted independently of the alleles of another gene (Y/y).* 6. Gametes fuse randomly, without regard to the particular alleles they carry. *A modern caveat: this principle will hold if the two genes are located on a different pair of homologous chromosomes. Mendel’s Insights Rested on a Sound Understanding of Probability • To deduce the patterns of inheritance, Mendel used probability to analyze the data he collected from the offspring of the genetic crosses. • We can predict the probability that a particular offspring will have a certain phenotype or genotype, but we cannot predict the actual phenotype or genotype of a particular individual. • The probability that a particular offspring will display a specific phenotype is completely unaffected by the number of offspring. Extensions of Mendel’s Laws of Inheritance • Mendel’s work was based on genetic traits controlled by a single gene with a dominant and a recessive allele. • Mendel’s laws have been expanded to help explain more complex patterns of inheritance. Most human traits are non-Mendelian (their inheritance patterns cannot be explained by Mendel’s laws alone). Modern Variations on the Theme by Mendel • Incomplete dominance of alleles produces an intermediate phenotype in the heterozygote. We can still predict the genotypes and phenotypes of F1 and F2 offspring using Mendelian laws of inheritance. Another Example of Incomplete Dominance: Coat Color in Horses and Other Mammals Intermediate phenotype The Alleles of Some Genes Are Codominant • Codominance occurs when the effect of both alleles is equally visible in the phenotype of the heterozygote. • Neither allele is diminished or diluted in a heterozygote that displays codominance. • The ABO blood groups provide an example of codominance: -The I/i gene controls the type of cell surface sugars that are found on a person’s red blood cells – The I allele is dominant over the i allele – However, the IA and IB alleles are codominant A Pleiotropic Gene Affects Multiple Traits • The situation in which a single gene influences two or more distinctly different traits is called pleiotropy. • A mutation in a pleiotropic gene can cause changes in many different traits. • Albinism is an example of a pleiotropic disorder. Albinism is caused by a single recessive allele affecting pigment formation, but other traits such as vision are also affected. Another Example Of Pleitropy: Marfan Syndrome [Marfan syndrome is a connective tissue disorder with a dominant pattern of inheritance. Connective tissue is a mixture of cell types that binds and strengthens organs and other tissue types. Bone, cartilage, tendons, and the sheath surrounding blood vessels are examples of specialized connective tissue.] Flo Hyman was diagnosed with Marfan syndrome only after her death, shortly after she and her teammates won the silver at the 1984 Olympic games. Alleles for One Gene Can Alter the Effects of Another Gene • The term epistasis applies when the phenotypic effect of the alleles of one gene depends on the presence of certain alleles for another, independently inherited gene. • Epistasis can be seen in the coat color of numerous animals, whose many genes code for enzymes that convert the amino acid tyrosine into melanin in a multistep pathway. The Environment Can Alter the Phenotype • Chemicals, nutrition, sunlight, and other internal and external environmental factors can alter the effects of certain genes. • The production of melanin in Siamese cats is sensitive to temperature— cooler temperatures produce dark fur on the extremities. Polygenic Inheritance of a Genetic Trait Leads to a Range of Phenotypes in the Population • Traits governed by the action of more than one gene are polygenic traits. • Skin color, running speed, blood pressure, and body size are all polygenic traits in humans. • Skin color in humans, and many other mammals, is controlled by multiple genes. • Assuming control by three genes, each with two incompletely dominant alleles, seven different phenotypes are possible in the offspring of triple-heterozygote parents. A Three-Trait Punnett Square to Predict the Phenotypic and Genotypic Outcomes with Respect to the Skin Color Trait If you imagine that skin color is controlled by just three genetic loci, with only two alleles that display incomplete dominance, you would predict seven possible phenotypes in the offspring of a couple that both have an intermediate phenotype (are heterozygotes for each of the three genetic loci hypothetically controlling skin color). Polygenic Traits, Combined with Environmental Influences, Produce a Smoothly Graded Range of Phenotypic Classes or Continuous Variation Now, consider the influence of sun exposure on the seven Predicted phenotypes. An even broader range of phenotypes, from very pale to very dark, is possible. • Geneticists estimate there are more than a dozen genes that control melanin production in our skin, which, when coupled with environmental influences, results in continuous variation in the trait. Most Traits That Are Essential for Survival Are Complex Traits • Complex traits are those that cannot be predicted using Mendel’s laws of inheritance; complex traits display often display continuous variation in a population. • According to one hypothesis, the evolutionary benefit of continuous variation in phenotypes is that if the environment changes, there are good odds that one out of the many phenotypes will be adaptive under the new conditions. BIOLOGY MATTERS: KNOW YOUR TYPE • Molecules foreign to the body are recognized as antigens by the immune system. • The cell surface sugars responsible for the A/B/AB blood groups are potential antigens. • If type A whole blood is given to a patient with blood type B or O, the recipient’s immune system produces specific antigen-fighting proteins (antibodies) that attack their target antigen (red blood cells with A-type sugars, in this example). The transfused cells clump together when attacked, leading to life-threatening clots. In a blood transfusion, the donor and recipient blood types must match. APPLYING WHAT WE LEARNED: SOLVING THE MYSTERY OF THE LOST PRINCESS • In 1991, the grave of Czar Nicholas and some of his family members was discovered. • Five alleles of one gene—A1, A2, A3, A4, and A5— are common in people of European descent. Anna Anderson, a Polish factory worker, claimed she was Anastasia. • The czar’s genotype: A1A2; czarina’s genotype :A2A3 • Anna Anderson’s genotype: A4A5 • Mendelian genetics shows that Anna Anderson could not be the offspring of Czar Nicholas and Czarina Alexandra. • In 2009, DNA recovered from a skeleton buried near the Romanov family was confirmed to be that of Anastasia and her brother Alexei. Grand Duchesses Maria (left) and Anastasia visiting a hospital for soldiers. List of Key Terms: Chapter 9 allele (p. 194) codominance (p. 204) complex trait (p. 210) dihybrid (p. 200) dominant allele (p. 195) epistasis (p. 207) F¹ generation (p. 196) F² generation (p. 196) gene (p. 192) genetic cross (p. 196) genetic trait (p. 192) genetics (p. 192) genotype (p. 194) heterozygote (p. 195) homozygote (p. 195) hybrid (p. 198) incomplete dominance (p. 203) law of independent assortment (p. 202) law of segregation (p. 199) monohybrid (p. 199) mutation (p. 195) P generation (p. 196) phenotype (p. 193) pleiotropy (p. 206) polygenic (p. 208) Punnett square (p. 199) recessive allele (p. 195) Phenotypic variation in guppies Class Quiz, Part 1 The orange gene (O) controls the production of a pigment (pheomelanin) that gives Bengal tigers their orange coat color. Felines that are homozygous for the inactive version of the gene (oo) fail to make pheomelanin and have white fur. If a white tiger (oo) mates with a carrier for the trait (Oo), what are the odds that they will have a white tiger cub? A. 4/4 B. 1/2 C. 1/4 D. 0/4 (The O gene controls orange fur. Black pigment is controlled by other genes, expressed in a stripelike pattern of skin cells; in white tigers (oo), no orange pigment is made anywhere, but the black pigment is produced in the normal pattern, so these tigers keep their stripes.) Class Quiz, Part 2 A. B. C. D. A red carnation and a white carnation produce offspring that are all pink. The alleles controlling these flower phenotypes show complete dominance. incomplete dominance. codominance. epistasis. Class Quiz, Part 3 Fur color in rabbits shows incomplete dominance. FBFB individuals are brown, FBFW individuals are cream, FWFW individuals are white. What is the expected ratio of a FBFW x FWFW cross? A. 3 white : 1 brown B. 3 white : 1 cream C. 2 white : 2 cream Class Quiz, Part 4 Marfan syndrome is caused by a single allele, M, that codes for an abnormal version of a protein called fibrillin-1 that is produced by many different cell types and plays an important role in gluing cells together. The symptoms of Marfan syndrome include unusual tallness, with long arms, legs, fingers, and toes; weakening of the aorta, the largest blood vessel carrying blood away from the heart; and eye problems. From this information we can conclude that A. the M allele is codominant with m allele. B. the M and m allele is incompletely dominant. C. Marfan syndrome shows polygenic inheritance. D. the gene that codes for fibrillin-1 displays pleitropy. E. the M and m alleles display epistasis. Relevant Art from Other Chapters • All art files from the book are available in JPEG and PPT formats online and on the Instructor Resource Disc A fluorescence in situ hybridization of chromosomes Genes Are Located on Chromosomes Autosomes and Sex Chromosomes Most Chronic Diseases Are Complex Traits Crossing-Over The Sorting of One Pair of Homologous Chromosomes Is Independent of the Sorting of Any Other Pair of Homologous Chromosomes • Which homologue of each pair goes to which pole is essentially random. The Flow of Genetic Information Messenger RNA Directs Protein Synthesis 9.1 Concept Check, Part 1 1. What is an allele? How do new alleles arise? How many different alleles can a single person carry for a particular gene? ANSWER: Alleles are different versions of a particular gene. New alleles arise by mutation, a change to the gene’s DNA code. Normally, an individual carries only two alleles for any gene. 9.1 Concept Check, Part 2 2. For a single genetic trait, what is the difference between a phenotype and a genotype? ANSWER: The phenotype is the particular version of a genetic trait that is displayed by an individual, such as wiry hair or smooth hair in dogs. The genotype specifies the allelic makeup that determines the phenotype. Dogs with wiry hair (a dominant trait) have either the genotype WW or Ww; those with smooth hair (recessive) have the genotype ww. 9.2 Concept Check, Part 1 1. Hair length in cats is controlled by a gene that has at least two alleles, L and l. Short-haired cats are LL or Ll. Long hair is a breed standard for Maine coon cats. Are these cats homozygous for the hair length allele? What is their genotype? ANSWER: Purebred Maine coon cats are homozygous recessive for the hair length gene, with the ll genotype. 9.2 Concept Check, Part 2 2. Which of Mendel’s observations demonstrated that the theory of blending inheritance was false? ANSWER: The F1 generation did not have an intermediate phenotype, and moreover, the parental phenotypes reappeared in the F2 generation instead of vanishing forever into a blended phenotype. 9.3 Concept Check, Part 1 1. For the offspring of a cross between an Rr plant and an rr plant, with R being dominant, predict the number and ratio of genotypes and phenotypes. ANSWER: Two genotypes (Rr and rr) and two phenotypes are predicted, each in a ratio of 1:1. Constructing a Punnett square confirms this. 9.3 Concept Check, Part 2 2. Explain Mendel’s law of segregation and law of independent assortment. ANSWER: The law of segregation states that during gamete formation, two alleles separate into different gametes so that each carries only one allele; the law of independent assortment states that alleles of two different genes are sorted into gametes independently of each other. 9.4 Concept Check, Part 1 1. Allele H produces straight hair; allele HH' produces curly hair. Individuals with the HH' genotype have wavy hair, somewhere between straight and curly. Are alleles H and HH' codominant? ANSWER: No. They display incomplete dominance because they produce an intermediate phenotype in the heterozygote. 9.4 Concept Check, Part 2 2. What is pleiotropy? ANSWER: In pleiotropy, a single gene affects several to many different genetic traits. 9.4 Concept Check, Part 3 3. The ABO blood groups are determined by several alleles of the I gene. Is ABO blood type a polygenic trait? ANSWER: No. Polygenic means “many genes.” ABO blood groups are controlled by a single gene with multiple alleles.