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7 Sugar Amino Acids 7.1 Introduction A recognized strategy in drug discovery for generating new bioactive molecules takes into account the vast array of natural products and fundamental building blocks used by nature, like amino acids, sugars and nucleosides, to produce new chemical entities with multifunctional groups anchored on a single framework as the starting point for the creation of new molecules. Sugar amino acids (SAAs) represent an important class of templates deriving from the chiral pool that have attracted noteworthy interest in the area of peptidomimetics. Sugar amino acids [1] are defined as carbohydrates possessing at least one amino and one carboxylic functional group directly attached to the cyclic sugar moiety. Thus, such compounds represent an important class of building blocks for the generation of peptide scaffolds and constrained peptidomimetics, owing to the presence of a relatively rigid furanoid or pyranoid ring decorated with space-oriented substituents. Much effort has been devoted during last the two decades to expanding the chemical diversity of this class of hydroxylated cyclic amino acids. Specifically, SAAs have been synthesized mainly as furanoid or pyranoid compounds, and both cyclic and bicyclic scaffolds have been reported (Figure 7.1). There are several advantages to using SAAs as building blocks: • These molecules possess the typical rigid furan and pyran rings as of carbohydrates, which make them ideal candidates as non-peptide scaffolds for peptidomimetic chemistry. • They can be easily incorporated into peptide sequences by virtue of their carboxylic and amino functional groups according to standard solid- or solution-phase peptide synthesis methods. • These compounds take advantage of the structural diversities of carbohydrate molecules, as the presence of several stereocenters gives access to a wide array of isomers that can be used to create combinatorial libraries of SAA-based molecular frameworks. • The protected/unprotected hydroxyl groups on the sugar rings can be exploited to modulate the hydrophobic/hydrophilic nature of such molecular assemblies. Peptidomimetics in Organic and Medicinal Chemistry: The Art of Transforming Peptides in Drugs, First Edition. Andrea Trabocchi and Antonio Guarna. © 2014 John Wiley & Sons, Ltd. Published 2014 by John Wiley & Sons, Ltd. 138 Peptidomimetics in Organic and Medicinal Chemistry O (OH)k H2N O (OH)k CO2H H2N m n CO2H m n n = 0,1 m = 0,1 k = 0,3 pyranoid-SAA furanoid-SAA Figure 7.1 General structure of furanoid (five-membered ring) and pyranoid (six-membered ring) sugar amino acids Generally, the amino group is introduced by azidolysis of a hydroxyl group followed by reduction and protection of the resulting amine, although cyanide and nitro equivalents have been also reported. The carboxylic group is usually obtained by oxidation of a primary alcohol; in addition, hydrolysis of cyanide or direct insertion of CO2 have been also described. A quite recent compendium by Fleet and Overhand reported on the panorama of SAAs, differing in ring size and further arranged by the amino acid class depending on the relative orientation of the amino and carboxylic groups in the molecule [2]. Accordingly, a similar description of the class of SAAs is presented, taking into account the amino acid subclass and the furanoid or pyranoid structure within each amino acid group. 7.2 7.2.1 𝛂-SAAs Furanoid 𝛂-SAAs Furanoid α-SAAs have been reported mainly by Fleet and colleagues starting from the mid-1990s. The common features of these molecules, possessing the furanoid scaffold, is to have the carboxylic and amino functional groups installed at C1 in place of the hemiacetalic moiety (Figure 7.2). Dondoni and collaborators reported in 1994 [3] a general synthesis to anomeric furanoid-based α-amino acids taking into account the azido group as a protecting group for the amine. This synthesis considered the use of a thiazolyl ketol acetate species as the key intermediate in the formylation of the sugar moiety at the anomeric position. Starting from the addition of 2-lithiothiazole to the lactone, and subsequent acetylation, the corresponding α- or β-anomer 1 (Scheme 7.1) was treated with trimethylsilyl triflate (TMSOTf) and trimethylsilyl azide (TMSN3 ) to give the corresponding α- and β-azido glycosides α-2 or β-2 in high yield and stereospecificity. Subsequent manipulation of this R O α NH2 1 CO2H HO OH R = H, CH3, CH2OH, CH(OH)CH2OH Figure 7.2 General structure of furanoid α-SAAs Sugar Amino Acids S O O O O S O N OAc O NaBH4 N3 TMSOTf O O 1 HgCl2 O 2 O CHO O O N3 O TfOMe N O TMSN3 139 O Ag2O, then diazomethane CO2Me O O O N3 O O H2, Pd/C isolated as crude 3 4 O O α CO2Me O 1 NH2 O O 5 Scheme 7.1 Synthetic approach to anomeric furanoid-based α-amino acids using thiazolyl ketol acetate species species resulted in the formylated derivative 3, which was subjected to oxidation with Ag2 O, followed by esterification with diazomethane, and final catalytic hydrogenation over Pd/C catalysis to give the final furanoid α-amino acid 5, as the α- or β-anomer, depending on the stereochemistry of starting thiazolyl ketol acetate. This approach was also reported for a galacto-derived pyranoid species (see Scheme 7.6 below). Similarly, Fleet and coworkers obtained α-SAAs bearing the amino and carboxylic functions at the anomeric position through the corresponding azido and methyl ester functionalities as the protected forms (Scheme 7.2). The approach from δ-lactones considered the process of ring contraction, followed by introduction of the azido group after a bromination reaction at the α-position of the ester group [4]. This synthetic strategy is based upon the propensity of 2-O-trifluoromethanesulfonates of carbohydrate lactones to ring contract in basic or acidic methanol to afford the corresponding highly substituted tetrahydrofuran (THF) carboxylates. These compounds can be regioselectively brominated and the bromine subsequently displaced with sodium azide to give access to a range of anomeric furanoid α-SAAs, after further chemical manipulation. A similar approach was also applied for the generation of l-rhamnose mimetics [5]. Specifically, ring contraction of readily available δ-1actones provided a short route to the synthesis of both epimers of rhamnofuranosides, followed by radical bromination to give access to the corresponding α-azido carboxylates. The Kiliani chain extension of isopropylidene-rhamnose 6 was taken into account for the epimeric δ-lactones. Esterification of the major isomer 7 with trifluoromethanesulfonic anhydride (Scheme 7.3) 140 Peptidomimetics in Organic and Medicinal Chemistry O RO O RO ring contraction O CO2Me RO OTf RO OR OR 1. α-bromination 2. azide displacement 1 O 1 CO2R 2 α NHR functionalization HO HO CO2Me O RO OH N3 RO OR Scheme 7.2 General approach to furanoid α-SAAs via ring contraction of carbohydrate δ-lactones O OH Kiliani chain extension OH HO O RO O OH O OH 6 O 7: R = H 8: R = Tf triflate formation ring contraction O 1 N3 azide α CO2Me displacement HO O O 11 X O CO2Me HO O radical bromination O 9: X = H 10: X = Br Scheme 7.3 α-SAA from L-rhamnose gave the corresponding triflate 8, which evolved to the corresponding THF 9 in 41% overall yield upon treatment with potassium carbonate in methanol. Radical bromination of ester 9 by N-bromosuccinimide in carbon tetrachloride and in the presence of benzoyl peroxide produced the relatively unstable bromide 10, which reacted with sodium azide in dimethylformamide to give the final α-azido ester 11 in an overall yield of 60%. The azido carboxylates as rhamnofuranose mimetics containing a constituent α-amino acid moiety at the anomeric position were applied to the generation of a wide range of rhamnofuranose mimics, including anomeric spiro derivatives such as the rhamnose analogue of the bicyclic herbicide hydantocidin. These compounds were conceived as tools for elucidating the biosynthesis of the cell walls of mycobacteria [6]. Sugar Amino Acids HO HO O HO 141 O THF HO formation O HO OH HO glucoheptonolactone HO OH OH 1. α-bromination 2. azide displacement O O 1 N3 α CO2Me O RO OR Scheme 7.4 Three-step approach for the generation of epimeric azido esters containing a glucofuranosyl moiety from glucoheptonolactone The three-step approach consisting of ring contraction, radical bromination and azide displacement was also applied for the generation of epimeric azido esters containing a glucofuranosyl moiety from glucoheptonolactone. In this case, the furanoid species was generated from a γ-lactone (Scheme 7.4). These protected molecules were further reduced to the corresponding amino esters, and taken as intermediates for the generation of combinatorial libraries of glucofuranose mimics and of spiro derivatives of glucofuranose at the anomeric position [7]. The same research group reported other papers on anomeric α-SAAs derived from mannofuranose as building blocks for the incorporation of mannofuranose units into peptide chains and for the formation of spirodiketopiperazines [8]. In this report, a novel oxidative ring contraction was conceived, starting with bromination at C2 of the lactone, followed by azide reduction and ring opening of imino lactone by methanol to give an open-chain hydroxyimine, which then cyclized to form the epimeric amino esters. Interesting work on the synthesis of α-SAAs was proposed by Lakhrissi and Chapleur [9], who reported a two-step route to α-chloro- and α-azido-ulosonic esters from lactones involving the reaction of dichloroolefins with m-chloroperbenzoic acid (mCPBA). Subsequent substitution of chlorine by the azide ion yielded the corresponding anomeric α-azido esters (Scheme 7.5). This reaction proceeds with high stereocontrol, likely via dichloro-epoxide formation followed by fast rearrangement to acyl chloride and esterification. The first step is the formation of a dichloro-epoxide 13 from dichloroolefin 12, which rearranges quickly to the corresponding chloroacyl chloride 14 and reacts with methanol. As a consequence of the rearrangement, the chlorine atom is cis to the isopropylidene ring, and as a result the final α-azido ester 15 has the azide group trans to the isopropylidene, due to inversion of configuration during azide substitution by treatment of the chloro ester with sodium azide. Finally, Fleet et al. reported a multigram synthesis of two epimeric six-carbon THF carboxylates based upon a d-arabinofuranose template, to obtain such building blocks suitable for the generation of oligomers possessing well-defined secondary structures. Here, the radical bromination was also taken into account for the introduction of the nitrogen species at C2 to afford anomeric α-amino acid derivatives [10]. 142 Peptidomimetics in Organic and Medicinal Chemistry Cl O Cl O O O O Cl O O mCPBA O O Cl O 12 O 13 1. MeOH 2. NaN3 O 1 N3 O O O O O O 15 Scheme 7.5 Cl Cl O α CO2Me O O O 14 α-SAA from the reaction of dichloroolefins with m-chloroperbenzoic acid HO O 1 NH2 α CO2H HO OH OH (a) O OH 4 H2N α HO2C OH OH (b) Figure 7.3 Structure of pyranoid SAA possessing the amino and carboxylic functions at the anomeric position (a) C1 and (b) at C4 7.2.2 Pyranoid 𝛂-SAAs Most reported α-SAAs have a furanoid scaffold, and only a few examples of pyranoid species were developed. Among this group of SAAs, application of the two amino and carboxylic groups was conceived also at positions other than the anomeric one, as always found in furanoid scaffolds; an example of an α-SAA possessing such groups at C4 appeared in the literature in 2000 (Figure 7.3). According to the procedure using thiazolyl ketol acetate species reported for furanoid SAA (Scheme 7.1), with 16 the N-glycosidation of either α- or β-anomer with TMSN3 -TMSOTf gave stereospecifically the azido galactopyranoside 17 in 88% isolated yield (Scheme 7.6). The crude aldehyde 18, obtained by application of the thiazolyl-to-formyl deblocking procedure, was converted into the α-azido ester 19 (54% yield from 18), which gave the amino ester 20 in 62% yield by selective reduction of the azido group using Pd-catalysed hydrogenation. A different approach to pyranoid α-SAAs took advantage of the incorporation of the anomeric centre of d-mannopyranose [11]. The authors reported the development of d-mannopyranose derivatives incorporating an anomeric α-amino acid component. The Sugar Amino Acids S S N O BnO OAc BnO 143 TMSN3 TMSOTf 88% OBn N O BnO N3 BnO OBn 16 OBn OBn 1. TfOMe 17 2. NaBH4 O BnO 3. HgCl2 1 CO2Me 1.Ag2O α N3 BnO 2.CH2N2 54% OBn OBn OBn 18 19: R = N3 62% N3 BnO OBn H2, Pd/C CHO O BnO 20: R = NH2 Scheme 7.6 Synthetic approach to a pyranoid-based α-amino acid a using thiazolyl ketol acetate species OH OPg O PgO PgO O N-bromophthalimide N Pg OPg H 21 H2 Pd/C HO O PgO PgO O HN Pg 22 O O 1 NH α O OPg HO OPg 23 Pg=protecting group Scheme 7.7 Synthesis of D-mannopyranose-derived α-SAA from an acylated bicyclic [2.2.2] lactone N-acylated bicyclic [2.2.2] lactone 22, formed via an oxidative ring closure, gave access to glycopeptide analogues of d-mannopyranose. It was ascertained that mannopyranose derivatives containing an α-amino acid moiety at the anomeric position are less stable than the mannofuranose isomers. The synthetic strategy employed the oxidation of the C2 nitrogen-bearing substituent of δ-lactone 21 with concomitant closure from the hydroxy group at C6 to produce a [2.2.2] bicyclic lactone 22, which upon opening gave the amino acid derivative 23 with complete anomeric stereocontrol (Scheme 7.7). A pyranoid SAA from the corresponding hydantoin derivative was prepared by taking advantage of the carbohydrate precursor 24, which possess the ketone moiety at C4, thus resulting in a non-anomeric pyranoid α-SAA (Scheme 7.8) [12]. The addition of cyanide ion, followed by hydantoin formation (26) and hydrolysis of the deprotected hydantoin 27 provided inclusion of the amino and carboxylic functions at the C4 position of the pyranoid scaffold 28. 144 Peptidomimetics in Organic and Medicinal Chemistry O OMe O KCN O O O OMe NC (NH4)2CO3 O HO HN NH O 24 O O OMe O O O 25 26 H3O+ O HO2C OMe 4 H2N OH α OH OH 28 O O OMe - HN NH O OH OH 27 Scheme 7.8 Pyranoid sugar α-amino acid via the corresponding hydantoin derivative to install the amino and carboxylic functions at C4 7.3 7.3.1 𝛃-SAAs Furanoid 𝛃-SAAs Most research in the field of β-SAAs has concentrated on the furanosidic scaffold. In the group of β-SAAs encompassing both furanosidic and pyranosidic structures, two major subgroups can be ascribed as a function of the position of the carboxylic and amino functions, one group embracing all the compounds possessing both the amino and carboxylic groups at C1 of the sugar moiety and the second group consisting of compounds having the amino group at C2 and the carboxylic group at C1. To produce inexpensive and chemically diverse carbohydrate building blocks more amenable for use in combinatorial organic synthesis, amino and carboxylic functional groups were incorporated into several monosaccharides. In the work by McDevitt and Lansbury [13], a series of 12 SAAs were prepared from commercially available starting materials, and oligomeric ‘glycotides’ were generated through conventional solution-phase peptide synthesis techniques. The synthesis considered the suitably protected furanosidic species 29 to install the azido group via triflate displacement reaction by sodium azide, followed by oxidation of the primary alcohol group of 30 to produce the anomeric furanoid β-SAA 31 (Scheme 7.9). Fleet and coworkers reported a series of β-SAAs possessing the carboxylic function at the anomeric position. In a first report [14], furanoid β-SAAs derived from d-glucoheptonolactone were synthesized and applied as building blocks for β-oligopeptides (Scheme 7.10). Specifically, the β-azido-tetrahydrofuranyl-2-carboxylate 32, as the β-SAA precursor, was derived from the corresponding azido ester 33. This compound was obtained by introducing the azido group at C4 of the five-membered ring 34 with inversion of configuration, thus obtaining a building block with the d-glycero-d-allo-heptonate stereochemistry. The key step in the synthesis of the furanoid C-glycoside 34 involved the treatment of a 2-O-triflate of a carbohydrate lactone with acidic methanol, followed by hydrolysis of the side-chain acetonide and methanolysis of Sugar Amino Acids HO O O O HO O 2. CH3I O MeO2C 3. TBAF O β O N3 O 29 1. KMnO4 O 2. NaN3 O HO HO 1. Tf2O OTBDPS O TBDPS-Cl py 145 O N3 31 30 Scheme 7.9 Furanoid β-SAA obtained by installing the azido group via a triflate displacement reaction, and the carboxylate function through oxidation of the primary hydroxyl group O O HO2C O O CO2Me OR β N3 N3 OTBDMS 32 OTBDMS 33 HO HO HO O HO HO 35 O OH O HO HO CO2Me OH 34 Scheme 7.10 Furanoid β-SAA derived from D-glucoheptonolactone the lactone, with concomitant intramolecular displacement of the triflate at C2 of 35 by the hydroxyl group at C5. In another report [15], an anomeric β-SAA was obtained by azide insertion to the suitably protected furanosidic hexose 36, followed by deprotection via hydrolysis to achieve a free azido hexopyranose 37 as the substrate for the formation of γ-lactone 38 through bromine oxidation. After selective protection of C5 and C6 hydroxyls as acetonide, the target β-azido ester 39 was obtained by esterification of the remaining free hydroxyl group in 38 with triflic anhydride, followed by reaction with hydrogen chloride in methanol (Scheme 7.11). A similar approach (Scheme 7.12) was applied for the straightforward synthesis of the furanoid β-SAA 3-amino-3-deoxy-1,2-isopropylidene-α-d-ribofuranoic acid 44 starting from diacetone glucose 40. This building block was also applied in the synthesis and NMR conformational analysis of linear and cyclic oligomers as structural templates for peptidomimetic drug design [16]. After insertion of the azido group at C3 of 41, the desired anomeric β-SAA was obtained by deprotection and oxidative demolition of the 146 Peptidomimetics in Organic and Medicinal Chemistry OH O O O O O OH 1. Br2, BaCO3 aq. TFA 2. acetone, CSA HO OH O N3 N3 36 37 O O O N3 O HO 1.Tf2O, py O 2.HCl-MeOH CO2Me β OH HO 38 N3 39 Scheme 7.11 Synthesis of anomeric β-SAA via the formation of a γ-lactone intermediate through bromine oxidation 1. Tf2O,py O O O O 2. NaN3 O O O O HO 41 O O N3 42 Scheme 7.12 glucose 40 1.H2,Pd/C 1. NaIO4 2. KMnO4 HO2C O HO HO AcOH O N3 40 O O O O N3 43 O 2.Fmoc-Cl HO2C O β Fmoc NH O 44 Synthesis of the α-D-ribofuranoic acid-based furanoid β-SAA 44 from diacetone hydroxyl groups at C5 and C6 of 42, followed by final oxidation of the primary alcohol to the corresponding carboxylic acid 43. The β-SAA was then obtained as a Fmoc-derivative after azide reduction by catalytic hydrogenolysis and amine protection. Access to another furanoid β-azido ester (Scheme 7.13) was achieved from l-arabinose 45 through conversion of this hexose into the corresponding δ-lactone 46, and activated as 2-O-triflate, followed by ring contraction and subsequent manipulation of 47 to introduce the azide via the 3-O-triflate [17]. Finally, entry to a furanoid β-SAA possessing the carboxylic group at C2 and the amino surrogate at the anomeric position was achieved by formal homologation of the anomeric α-SAA species [18]. Specifically, the synthesis of fused furanosyl β-amino esters from protected sugar lactones was accomplished by combining a Wittig-type reaction and the 1,4-addition of benzylamine on the resulting glycosylidenes (Scheme 7.14). This sequence of reactions afforded either N-glycosyl-3-ulosonic acid esters, which are the β-analogues of anomeric sugar β-amino esters. This series of glycosyl β-amino acids are characterized Sugar Amino Acids O OH O O K2CO3 MeOH ox OH O O Tf2O 147 OTf O O py 46 45 1. Tf2O O CO2Pr OH TBDPSO O CO2Pr 2. NaN3 β TBDPSO N3 47 48 Scheme 7.13 Access to a furanoid β-azido ester (48) from L-arabinose through ring contraction of the δ-lactone to the tetrahydrofuran ring R1 O O R2 O Wittigtype reaction (Z or E) R1 O CHCO2Me R2 O O O R1=H, OMe R2=CH3, OMe R1=R2=OC(CH3)2OCH2 amine 1,4 addition R1 NHR O β CO2Me R2 O O Scheme 7.14 Formal homologation of anomeric α-SAA species to give the corresponding furanoid β-SAA by having the amino group directly linked to the anomeric centre, whereas the carboxylic group is spaced from C1 by a methylene unit. Such structures can also be regarded as β,β-disubstituted β-amino acids, which are obtained by a two-carbon chain elongation of the sugar skeleton from protected aldonolactones using a Wittig-type methodology. 7.3.2 Pyranoid 𝛃-SAAs A glucose-derived pyranoid β-SAA was synthesized and applied in the bioconjugation to a peptide possessing an isosteric replacement of the N-glycosidic linkage through a reversed amide bond [19]. This β-SAA was synthesized by treating the chloro precursor with tributyltin lithium, followed by the generation of the glycosyl dianion 49 and subsequent trapping by carbon dioxide to give β-SAA 50. This building block was also applied in a series of bioconjugation reactions with suitable amino acid moieties to give C-glycopeptides 51 148 Peptidomimetics in Organic and Medicinal Chemistry BnO O BnO OBn BnO O OH 1. SOCl2 BnO 2. Bu3SnLi BnO NHAc 74% NHAc 83% NAc BnO O BnO CO2 CO2H β NHAc BnO OBn Li 1.BuLi, -78°C 2.BuLi, -55°C OBn Li O SnBu3 OBn 50 peptide coupling 49 O BnO O N H β NHAc BnO n O HN OBn 51 Scheme 7.15 β-SAA Synthesis and peptide bioconjugation strategy of a glucose-derived pyranoid possessing an inverted amide linkage with respect to glucopyranosyl-asparagine derivatives (Scheme 7.15). Kessler and coworkers reported an important work on the synthesis of various SAAs, and their application to linear and cyclic peptides, also providing detailed conformational analysis of the peptidic constructs. In this work, a glucosamine-derived β-SAA was conceived as a γ-turn mimetic [20]. Starting from d-glucosamine, the partially benzylated sugar 52 was protected at the amino function as Cbz in 90% yield (Scheme 7.16). Then, chlorination of the anomeric hydroxyl group provided the chloro compound, which was treated with tributyltin lithium to afford 53 in 79% yield. The glycosyl dianion 54 was generated in two steps by modulating the temperature: first, deprotonation of the urethane nitrogen occurred at −78 ∘ C using 1 equiv. of BuLi, and then transmetalation at −55 ∘ C was achieved using 1.2 equiv. of BuLi. The dianion 54 was subsequently trapped by carbon dioxide to afford the Cbz-protected β-SAA 55 (83% yield) possessing the carboxylic function at the anomeric position. 7.4 𝛄-SAAs1 Fleet reported the generation of THF-templated γ-amino acids starting from sugar-derived lactones (Scheme 7.17) [22]. The 2-triflate of carbohydrate δ-lactones 56 when treated 1 Trabocchi et al. [21]. Reproduced by permission of John Wiley and Sons, Copyright (c) 2009 John Wiley and Sons. Sugar Amino Acids 149 1.Cbz-Cl OBn SnBu3 1. 1 eq.BuLi, -78°C 2. 1.2 eq. BuLi, -55°C Cbz N OBn H 52 53 O BnO OH 2.SOCl2 O BnO 3.Bu3SnLi BnO BnO NH3+Cl- O BnO Li CO2 N Cbz BnO O 1 CO2H BnO β BnO γ-turn NH OBn Li OBn Cbz 54 55 Synthesis of a glucosamine-derived β-SAA and application as a γ-turn mimetic Scheme 7.16 R1O OH R2O O a O 57 OR1 XO R1O OH R2O O O 56 O OR1 TfO O N3 γ NH O O b R1O N3 O 59 THF templated γ-peptides O 58 X = Tf or protecting group R1 = protecting group Scheme 7.17 THF-templated γ-amino acids starting from sugar-derived lactones with methanol in the presence of either an acid or base catalyst underwent efficient ring contraction to highly substituted THF-2-carboxylates 57. Initial nucleophilic opening of the lactone ring by methanol, followed by subsequent SN 2-type ring closure of an intermediate hydroxy triflate forms the THF ring, with inversion of configuration at the C2 position. Thus, synthesis of the THF γ-azido esters (59) using this strategy allowed for the introduction of the C4 azido group either after (route a) or before (route b) formation of the THF ring. Access to bicyclic furanoid γ-SAA was reported by Kessler et al. starting from diacetone glucose (60), and the application to solid-phase synthesis for the generation of oligomers 150 Peptidomimetics in Organic and Medicinal Chemistry O O O O O NaN3 O O O RO O N3 62 60: R = H 61: R = Tf Tf2O O AcOH HO O HO2C γ O HN Fmoc 65 O TEMPO NaClO HO HO O R O O 1. H2,Pd/C 63: R = N3 2. Fmoc-Cl 64: R = NHFmoc Scheme 7.18 Synthesis of a furanoid γ-SAA from diacetone glucose was also disclosed [16]. Specifically, azidolysis of the triflate derivative of the diacetone glucose 61 gave the intermediate 62, which, after deprotection of exocyclic hydroxyl groups, was subjected to azide conversion into Fmoc-protected amine 64 in a one-pot process. Final oxidation of the primary hydroxyl group furnished the corresponding furanoid α-hydroxy-γ-amino acid 65 (Scheme 7.18). The first effective solid-phase chemical method for the preparation of carbohydrate-based universal pharmacophore mapping libraries was reported by Sofia et al. [23] The sugar scaffold 70 has three sites of diversification, with an amino and a carboxylic group of the γ-amino acid scaffold, and an additional hydroxyl group. The synthesis started from d-glucose derivative 66 (Scheme 7.19), which was treated with NaIO4 and nitromethane to introduce a nitro group at C3. Subsequent orthogonal protections and conversion of the nitro group into the corresponding protected-amino group, gave 69, which was further oxidized to the γ-amino acid 70 by the TEMPO–NaClO system (TEMPO = 2,2,6,6-tetramethylpiperidine-1-oxyl). By anchoring the carboxylic group on a solid phase, libraries of 1648 members were prepared using eight amino acids as acylating agents of the amino group and six isocyanates for functionalization of the hydroxyl group. 7.5 7.5.1 𝛅-SAAs2 Furanoid 𝛅-SAAs Among furanoid δ-SAAs, monocyclic compounds or oxabicyclo[3.3.0]octane and oxabicyclo[3.2.0]heptane structures have been synthesized by several authors according to different synthetic routes (Figure 7.4). 2 Trabocchi et al. [21]. . Reproduced by permission of John Wiley and Sons, Copyright (c) 2009 John Wiley and Sons. Sugar Amino Acids O HO OMe 1.NaIO4 HO O HO 2.NaOMe,MeNO2 OMe HO OH OH OH NO2 66 67 1.PhCH(OMe)2,H+ 2.Ac2O,py O O Ph OMe O 151 1.H2,Pd(OH)2/C 2.Fmoc-O-Su OAc NO2 68 O HO HO HN OMe HO2C TEMPO,NaClO O OMe OAc HO γ HN OAc Fmoc Fmoc 70 69 Scheme 7.19 Development of a pyranoid γ-SAA possessing three sites of diversification for the production of chemical libraries O monocyclic OR' O O O H2N O O H2N O Figure 7.4 SR HO2C CO2H OH O H2N RO CO2H H2N O [3.2.0] CO2H H2N RO [3.3.0] O CO2H H2N O O HO2C NH2 O OH Classification of furanoid δ-SAA structures CO2H 152 Peptidomimetics in Organic and Medicinal Chemistry Furanoid δ-SAAs 73 and 76 have been obtained using different strategic approaches by three different authors: Le Merrer, Chakraborty and Fleet. Le Merrer used mannose as the starting material to generate the enantiomerically pure double epoxide 71 [24], which was treated with NaN3 and silica gel to give the corresponding azidomethyl-furanoid sugar 72. Oxidation of the primary hydroxyl group and conversion of the azide into Boc-protected amine produced the corresponding furanoid δ-SAA 73. Starting from the enantiomeric epoxide 74, also obtained from d-mannitol in six steps, it was possible to achieve the δ-amino acid 76 having the same orientation of functional groups relative to the ring, but inverted configurations of the amino and carboxylic functions at C1 and C5 positions, respectively (Scheme 7.20). Chakraborty’s approach consists of an intramolecular 5-exo ring-opening of a terminal N-Boc-aziridine [25], derived from α-glucopyranose, during alcohol to acid oxidation, resulting in the protected furanoid δ-SAA 82 similar to 73 and with complete stereocontrol (Scheme 7.21). The stereoisomeric aziridine obtained with the same treatment from d-mannose precursor generated the corresponding isomeric δ-amino acid 83, having the configuration at C1 inverted. Fleet et al. reported a range of stereoisomeric furanoid δ-SAAs starting from sugar-derived lactones [26]. For example, the previously described compound 82 was obtained as azido ester 87 from d-mannono-γ-lactone 84 by acid-catalysed ring rearrangement of the corresponding triflate derivative 85 (Scheme 7.22). More recently, the same authors reported the synthesis of all diastereomeric precursors to THF-templated δ-amino acids lacking the hydroxyl at C2, starting from mannono- and gulono-lactones [27], in analogy with the corresponding THF-templated γ-amino acids (Scheme 7.23). Two different strategic approaches have been proposed, by changing the order of deoxygenation and THF formation reactions. The hydroxylated THF-carboxylic acid derivatives were further manipulated to obtain the azido esters as δ-amino acid precursors: selective activation of the primary hydroxyl group with tosyl chloride was followed by azide insertion at the δ-position. O 4 steps D-Mannitol NaN3 BnO OBn O O HO N3 BnO OBn O- O BnO N3 1.Na2Cr2O7, then CH2N2 71 six steps 2.H2,Pd/C MeO2C 1.Na2Cr2O7, then CH2N2 O NaN3 BnO OBn O HO N3 BnO O 74 Scheme 7.20 epoxides OBn 75 OBn 72 2.H2,Pd/C 3.Boc2O MeO2C O 3.Boc2O δ O NHBoc BnO δ OBn 73 NHBoc BnO OBn 76 Furanoid δ-SAA obtained from mannose through enantiomerically pure double Sugar Amino Acids N3 BnO O OMe HCl O N3 OBn OH OH NaBH4 OBn α-glucopyranose derivative 77 OBn N3 OH OBn MeOH BnO 153 OBn OBn OBn 79 78 Ph3P BocHN O δ CO2H R N PDC,DMF OBn OH HO OH OBn OBn 82 80: R = H 81 R = Boc Boc2O BocHN O δ D-mannose derivative HO CO2H OH 83 Scheme 7.21 Synthesis of furanoid δ-SAA by intramolecular 5-exo ring-opening of a terminal N-Boc-aziridine HO OH TfO O O Tf2O O OH O O O O D-mannono-γ-lactone 84 O 85 HCl MeOH δ O N3 HO OH 87 Scheme 7.22 CO2Me 1. TsCl 2. NaN3 O HO HO CO2Me OH 86 Synthesis of furanoid δ-SAA from D-mannono-γ-lactone Quite recently, a set of conformationally locked δ-amino acids have been proposed, based on furan rings [28]. In particular, a bicyclic furano-oxetane core has been proposed as scaffold for a constrained δ-amino acid. The synthetic strategy was based upon CO-insertion on fully protected β-d-ribofuranoside 88, followed by conversion of the primary alcohol function at C1 into azide to give 90. After hydroxyl group protection/deprotection steps, oxidation of the primary alcohol group, followed by aldol condensation with formaldehyde 154 Peptidomimetics in Organic and Medicinal Chemistry HO deoxygenation HO O O O O O OH O THF formation OH O MeO2C O OH O HO OH deoxygenation THF formation MeO2C O OH Scheme 7.23 Synthesis of THF-templated δ-amino acids using different approaches by changing the order of deoxygenation and THF formation reactions and oxetane cyclization produced 97, which was treated with Boc-on and Me3 P to convert the azido group into the corresponding Boc-protected δ-amino acid 99 (Scheme 7.24). Inversion of functional groups to obtain the isomeric δ-amino acid 106 was accomplished by protection of the alcohol function at C1 of 100 as the TBDPS (tert-butyldiphenylsilyl) ether, followed by conversion into Boc-protected amino group of the newly generated hydroxyl function at C5 via azide formation (Scheme 7.25). The conformational rigidity of pyran and furan rings makes carbohydrate-derived amino acids interesting building blocks in the introduction of specific secondary structures in peptides. For example, compound 109 (Scheme 7.26) was incorporated into the cyclic peptide containing the RGD loop sequence by SPPS (solid-phase peptide synthesis) using Fmoc chemistry [29]. Reduction of the azide to an amine group and coupling with the desired amino acid was realized in one-pot in the presence of Bu3 P and carboxylic acid activating agents. Allyl compound 107, derived from allylation of 2,3,5-tri-O-benzyl-d-arabinofuranose, underwent iodocyclization to 108 as a diastereomeric mixture that was easily separated by chromatography. This step, which is crucial for the formation of bicyclic scaffolds, consisted of an intermediate iodonium ion opening by attack of the γ-benzyloxy group, and formation of a cyclic iodo-ether with simultaneous debenzylation. The final azido acid 109 was obtained by reaction with Bu4 NN3 , followed by selective deprotection steps and primary alcohol Jones’ oxidation. 7.5.2 Pyranoid 𝛅-SAAs δ-Amino acids belonging to the SAA class constrain a linear peptide chain when the NH2 and COOH groups are in 1,4 positions. In particular, such δ-SAAs have been thought as a rigidified d-Ser-d-Ser dipeptide isosteres (Scheme 7.27) [20]. Synthesis of the β-anomer was reported starting from glucosamine. Ichikawa et al. reported the synthesis of a series of glycamino acids and their incorporation in oligomeric structures, a family of SAAs that possesses a carboxylic group at C1 position and the amino group at C2, -3, -4 or -6 position [30]. In particular, δ-amino acids with the amino group at C4 or C6 were reported; the syntheses are shown in Sugar Amino Acids O O OAc CO BzO BzO BzO Co2(CO)8 OBz OH BzO 1. MsCl 2. NaN3 O BzO OBz 88 N3 RO t-BuOK MeOH 89 155 OR 90: R = Bz 91: R = H 2,2-dimethoxypropane H O RO N3 RO O O 1. CH2O 2. NaBH4 O N3 O O O HO N3 O O O 92 93 94: R = OH 95: R = OMs MsCl Dess-Martin periodinane HCl O MsO N3 MsO HO N3 1. Boc-on, Me3P O RO NaOH 96 δ O N Boc H 2. TEMPO, NaClO O OH HO2C OH O OH 97: R = Ms 98: R = H HCl 99 Scheme 7.24 Synthesis of a constrained δ-amino acid containing a bicyclic furano-oxetane from β-D-ribofuranoside OH BzO 1. Dess-Martin RO OTBDPS 2. CH2O RO 3. NaBH4 O O BzO 1. TBDPS-Cl HO 2. t-BuOK, MeOH OBz 3. O MeO OMe 100 O O OTBDPS O 101 O 102: R = H 103: R = Ms MsCl 1. FeCl3 2. NaOH δ BocHN 1. NaN3 O O CO2H OH 106 TEMPO NaClO O BocHN 2. Boc-on OH O OH 105 O MsO OTBDPS 3. TBAF OH O 104 Scheme 7.25 Synthesis of constrained δ-amino acid 106 from β-D-ribofuranoside with inversion of the functional groups position with respect to 99 156 Peptidomimetics in Organic and Medicinal Chemistry H O I2 BnO I O O BnO BnO OBn H BnO 108 107 1.Bu4NN3 H N3 O 2.Ac2O HO2C 3.MeONa O 4.Jones H BnO 109 Scheme 7.26 Synthesis of bicyclic SAA precursor 109 by allylation of 2,3,5-tri-O-benzylD-arabinofuranose and subsequent iodocyclization HO HO OH OH O H2N HN H3CO O Sugar δ-aa D-Ser-D-Ser OH CO2H O NH OAc O OH NH3+Cl- Br O AcBr HO OAc NH3+Br- AcO OH D-glucosamine 1. MeOH,Py 2.Cbz-Cl O OMe AcO OAc 110 NHCbz OAc 111 MeOH Me2EtN OH HO2C O OMe δ HO NHCbz OH 113 Scheme 7.27 isostere O Pt/C O2 HO OMe NHCbz OH 112 Development of a pyranoid δ-amino acid from D-glucosamine as a D-Ser-D-Ser Sugar Amino Acids O HO CO2Me HO OH O O PhCHO Ph 157 CO2Me O OH OH OH 114 115 1. NaH, BnBr 2. NaBH3CN, HCl 3. Tf2O 4. NaN3 O HO Boc CO2H δ N H OH BnO 1. H2, Pd(OH)2/C R 2. LiOH, MeOH O CO2Me OBn OBn OH 118 1. H2S 116: R = N3 2. Boc2O 117: R = NHBoc Scheme 7.28 δ-Amino acid monomer for β-1,4-linked oligomers O HO HO OH CH3NO2 HO O NO2 HO OH OH OH OH D-glucose 119 1. H2, Pd/C 2. Fmoc-Cl HO2C O HO δ N H OH OH Fmoc TEMPO NaClO HO O HO N H Fmoc OH OH 120 Scheme 7.29 Synthesis of pyranoid δ-amino acid 120 from glucose using a nucleophilic aldol reaction to introduce a nitromethylene group at the anomeric position Schemes 7.28 and 7.29. Benzylidene-protected ester 115 was obtained starting from methyl β-d-galactopyranosyl-C-carboxylate 114 by treatment with benzaldehyde and formic acid. O-Benzylation and reductive opening of the benzylidene group were followed by treatment with Tf2 O and NaN3 to give the Boc-protected amino group at C4 of 117. Oligomerization was carried out using deprotected hydroxyl functions of Boc-protected δ-amino acid 118. The δ-amino acid 120 was synthesized starting from d-glucose, and using a nucleophilic aldol reaction to introduce a nitromethylene group at the anomeric position of 119 as an 158 Peptidomimetics in Organic and Medicinal Chemistry aminomethylene equivalent, followed by selective oxidation of the primary hydroxyl group to a carboxylic acid (Scheme 7.29) [31]. As an alternative approach to pyranosidic glucose-derived δ-amino acids, Xie proposed a synthetic route from β-C-1-vinyl glucose to generate δ-SAAs (Scheme 7.30) [32]. Starting from vinyl-glucoside 121, selective deprotection of the 6-benzyloxy group afforded 122. Primary alcohol oxidation with pyridinium chlorochromate (PCC) led to 126, which was treated with O3 /NaBH4 as an oxidation–reduction step to insert a hydroxymethyl function at C1. Final activation and azide insertion produced the δ-amino acid precursor 128. Alternatively, azide insertion at C6 via mesylation of the hydroxymethyl group followed by treatment with NaN3 allowed the synthesis of the δ-amino acid precursor 125, thus inverting the order of reactions. Oligomerization was carried out in solution using the corresponding azido ester and protected amino acid for subsequent coupling reactions. The synthesis of a pyranoid δ-amino acid has also been described by Sofia for the solid-phase generation of carbohydrate-based universal pharmacophore mapping libraries [23]. The sugar scaffold was provided with three sites of diversification, using an amino and a carboxylic group of the δ-amino acid scaffold, and an additional hydroxyl group. The selected δ-amino acid scaffolds were synthesized from glucosamine by amine protection as Cbz-urethane, followed by treatment with 2,2-dimethoxypropane to protect the hydroxyl groups at C5 and C6. Methylation of hydroxyl at C4 afforded the orthogonally protected 130. Subsequent hydrogenation, Fmoc-protection and oxidation with the TEMPO–NaClO system gave the δ-amino acid 132 with a free hydroxyl function at C4 (Scheme 7.31). 1.TMSOTf, Ac2O O BnO 2.NaOMe,MeOH BnO OBn HO BnO OBn 121 1.O3 OH 2.NaBH4 BnO OBn N3 N3 O BnO OBn OBn 126 1.MsCl 1.O3 2.NaN3 2.NaBH4 O BnO RO2C OBn O OH BnO OBn 123 OBn 124 δ OBn OBn 122 O N3 PCC, Ac2O RO2C ROH O OBn OBn 127 PCC, Ac2O 1.MsCl ROH 2.NaN3 δ O BnO CO2R OBn OBn 125 RO2C O BnO N3 OBn OBn 128 Scheme 7.30 Synthetic routes from β-C-1-vinyl glucose to pyranoid δ-SAAs Sugar Amino Acids O HO OH NH3+Cl- HO 1.Cbz-Cl 2.MeOH,HCl O HO OH O O O OCH3 130 HO2C O HO OCH3 131 OCH3 N H N H Cbz 129 MeO OMe 1. 2.NaH,CH3I OCH3 HO OH D-glucosamine 159 Cbz OCH3 N H 1.H2,Pd/C 2.Fmoc-Cl Cbz 1.p-TsOH 2.TEMPO,NaClO HO2C O OCH3 δ HO OCH3 N H Fmoc 132 Scheme 7.31 Arrows indicate the points of diversity 7.6 Representative Applications in Medicinal Chemistry Early reports on the application of SAAs were given by Kessler between 1994 and 1996 [20, 31], who first described the use of SAAs to make analogues of Leu-enkephalin and somatostatin, taking advantage of their ability to constrain linear backbone conformations or distinct turn structures. The specific propensity of furanoid SAAs with respect to pyranoid ones, when inserted in a peptide fragment, to establish intramolecular hydrogen-bonds between its hydroxyls and the main chain amides from their pyranoid counterparts was assessed. This was demonstrated by inserting a glucose-derived furanoid δ-SAA as a dipeptide isostere of the Gly-Gly sequence of Leu-enkephalin to give an analogue 133 consisting of Tyr-SAA-Phe-Leu, which possesses high similarity to the bioactive conformation of Leu-enkephalin (Figure 7.5). A detailed structural analysis of several peptidomimetic molecules containing furanoid SAA scaffolds showed that the free hydroxyl groups on the sugar rings prevent short linear hybrid peptides containing this type of SAA from adopting regular β-turn structures, as these hydroxyl groups themselves act as hydrogen-bond acceptors with adjacent hydroxyls, and in most cases they act as both hydrogen-bond donor and acceptor in the same molecule [33]. In SAAs, unlike in serine and threonine, the hydroxyls are conformationally restricted, forcing them to participate in the formation of unusual secondary structures. The unique behaviour of furanoid SAAs in experiencing intramolecular hydrogen-bonds when inserted in peptide fragments was also reported by Overhand et al. [34], who described that in the X-ray structure gramicidin S analogue 134, containing a furanoid SAA as a β-turn surrogate (Figure 7.6), an intramolecular hydrogen-bond between a hydroxyl group at C3 and the amide proton belonging to the sugar ring contributed to the stabilization of a well-defined reverse-turn structure. 160 Peptidomimetics in Organic and Medicinal Chemistry O O Boc O H N N H N H HO 133 HO H N O H CO2Me 9-membered intramolecular hydrogen-bond Leu-enkephalin Tyr-Gly-Gly-Phe-Leu peptidomimetic Figure 7.5 O Tyr---SAA---Phe-Leu Leu-enkephalin peptidomimetic containing a furanoid δ-SAA HO 3 O O OH O N H HN N H O 134 Figure 7.6 Gramicidin S peptidomimetic containing a furanoid δ-SAA O T K O O w Y NH O Figure 7.7 Cyclopeptidic somatostatin analogue containing a furanoid β-SAA: T = Thr, K = Lys, w = D-Trp and Y = Tyr Another entry to the application of these cyclic sugar-derived amino acids consisted of the generation of somatostatin analogues containing a SAA [35] (Figure 7.7) possessing antiproliferative and apoptotic activity against both multidrug-resistant and drug-sensitive hepatic carcinoma cells. Four analogues showed IC50 values in the low micromolar range, making them promising leads for chemotherapeutic drugs against multidrug-resistant carcinoma. An important field of application of SAAs is represented by oligomeric species containing multiple copies of a SAA, with the aim of addressing extended molecular Sugar Amino Acids HO HO HO N H HO O HO N H O HO HO O HO HO Boc HO HO 4 O HO N H O O N H O 3 161 NH R O 2 1 Tetrameric structure consisting of β-(1-2)-type glycamino acids Figure 7.8 interactions such as protein–protein interactions and oligosaccharide recognition events. Ichikawa reported the generation of O-sulfated glycamino acid oligomers [30], which were able to inhibit the replication of HIV-1 (human immunodeficiency virus) and sialyl Lewis x-dependent cell adhesion. Conformational analysis by 2D NMR revealed that the β (1-2)-trimer and tetramer species (Figure 7.8) tend to assume a 14-helical conformation in solution, and this folding preference was assumed as a consequence of the β-amino acid moiety embedded in the β-(1-2)-type glycamino acid. An entry to branched oligomeric species containing alternating β- and δ-SAA was reported by Sicherl and Wittmann [36], which specifically synthesized glycamino oligomers using protected derivatives of 2,6-diamino-2,6-dideoxy-β-δ-glucopyranosyl carboxylic acid, and taking advantage of the azide installed at C6 after selective tosylation of the CH2 OH starting from the deacetylated sugar moiety (Figure 7.9). Fmoc δ N H PgO O CO2H O N3 β NH Boc β NH Fmoc PgO OPg OPg H2N O O O O δ PgO PgO CO2H NH2 N H PgO O Bn N H NH2 N HO β OPg OPg N H O OPg NH2 Figure 7.9 Generation of branched oligomeric species containing alternating β- and δ-SAA 162 Peptidomimetics in Organic and Medicinal Chemistry 7.7 Conclusions In summary, during the last two decades many efforts have been devoted towards the generation of furanoid and pyranoid SAAs, taking advantage of carbohydrate chemistry and of significant advances in the construction and arrangement of such building blocks. The basic strategy consists of installation of the amino acid moiety within the sugar framework, taking advantage of azido and ester groups as key precursors for the amino and carboxylic species, respectively. 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