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14 GENE TECHNOLOGY EXTENDED LECTURE OUTLINE LEARNING OBJECTIVES Recognize that the ability to manipulate genes and move them from one organism to another has led to great advances in medicine and agriculture. Explain how restriction enzymes are used. List the four steps of a genetic engineering experiment. Explain what clone libraries are and how cDNA probes can be used to screen for the presence of a desired gene. Discuss the uses and accuracy of DNA fingerprinting. Give examples of how inserting human genes into bacteria has produced many medical advances. Describe piggyback vaccines. List ways in which agriculture has or will be transformed by genetic engineering. Genetic Engineering (p. 242) 14.1 14.2 14.3 A Scientific Revolution (p. 242; Fig. 14.1) A. Transferring genes from one organism to another falls into the realm of genetic engineering. B. Genetic engineering is having a major impact on medicine and agriculture. Restriction Enzymes (p. 243; Fig. 14.2) A. The first step of genetic engineering is to cleave the DNA that the geneticist wishes to transfer. B. This process involves the use of restriction enzymes that bind specific sequences of nucleotides and split the DNA in that position. C. Since DNA is made up of complementary bases, both strands do not split at the same position. D. Instead, “sticky” ends result because the DNA is cleaved at an angle. E. These “sticky” ends can then be joined with any other complementary sequence using ligase, a sealing enzyme. F. Since only the ends are involved, the combining of DNA from different sources (i.e., human and mouse, or human and bacteria) is possible. The Four Stages of a Genetic Engineering Experiment (p. 244; Figs. 14.3, 14.4, 14.5, 14.6) A. Transferring genes from one organism to the next involves four stages. B. Stage 1: Cleaving DNA 1. Cleaving DNA makes use of various restriction enzymes, each cleaving at a different nucleotide sequence. C. Stage 2: Producing Recombinant DNA 1. Recombining DNA often makes use of a bacterial plasmid, a small circular piece of DNA separate from the normal bacterial DNA. D. Stage 3: Cloning 1. Cloning involves getting thousands of bacterial colonies to grow, which together make up a clone library. E. Stage 4: Screening 1. The screening part of genetic engineering is often the most time-intensive, and investigators must first eliminate any clones that do not contain vectors. 51 2. 14.4 Secondly, investigators use a probe of ribosomal RNA to detect the presence of source genes. Working With DNA (p. 248; Figs. 14.7, 14.8, 14.9) A. PCR Amplification 1. Alternative to using bacterial plasmids to produce clones of source genes, geneticists use the polymerase chain reaction (PCR) to produce many copies of the source gene. 2. This procedure involves locating short sequences of nucleotides, called primers, on either side of the desired gene. 3. Heat is applied to a solution of DNA, the primers, nucleotides, and DNA polymerase, which disrupts the hydrogen bonds of DNA and produces single strands. 4. When cool, the primers are bound to their complementary sequences near the desired gene. 5. The enzyme, DNA polymerase, then begins at a primer and replicates the single-stranded DNA. 6. Many copies of the desired gene can be made in this manner. B. Formation of cDNA 1. Prokaryotes do not have exons interspersed with introns the way eukaryotes do, but instead have continuous information encoded in the DNA. 2. Thus, bacteria do not have the means to remove introns from eukaryotic DNA or newly transcribed mRNA. 3. What researchers must do, rather than using the primary transcript of mRNA, is to isolate the processed mRNA from the cytoplasm that eukaryotic cells have already excised of introns. 4. Reverse transcriptase is then used to make DNA from the processed mRNA, which produces a type of gene called copy DNA (cDNA) that is made up only of exons. 5. This cDNA can then be used by bacteria to produce proteins. C. DNA Fingerprinting 1. DNA can be analyzed for its unique restriction endonuclease patterns, yielding information that can be used to identify suspects from crimes. Advances in Medicine (p. 250) 14.5 Genetic Engineering and Medicine (p. 250; Figs. 14.10, 14.11; Table 14.1 ) A. Making “Magic Bullets” 1. Medical advances have also been made since the advent of genetic engineering. 2. Bacteria now mass-produce human insulin, the hormone that is underproduced in diabetics. 3. Other products, such as anticoagulants to dissolve blood clots and factor VIII to promote clotting, are now safely produced by bacteria, which eliminates the possibility of transferring diseases from a human donor. B. Piggyback Vaccines 1. Vaccines have been used for years to trigger immunity to a wide variety of diseases. 2. Vaccines can now be made more safely by inserting the gene for a pathogen's surface protein into the DNA of a harmless virus. 3. Such piggyback vaccines are being developed for malaria and other diseases. Transforming Agriculture (p. 252) 14.6 Genetic Engineering of Farm Animals (p. 252; Fig. 14.12) A. Yet another agricultural advance has been the mass production by bacteria of bovine somatotropin, which when fed to dairy cows, greatly enhances milk production. B. Similar growth hormones enhance the size of pigs and cattle. 52 14.7 Genetic Engineering of Crop Plants (p. 253; Figs. 14.13, 14.14, 14.15; Table 14.2) A. Pest Resistance 1. Certain crops, like cotton, have been engineered to be resistant to insect pests, which means these crops will not require pesticides. 2. Bacterial genes that produce enzymes toxic to certain plant pests have been inserted into tomatoes and other crops so that when the insect bites into a plant, it is killed by the now plant-produced enzymes. B. Herbicide Resistance 1. Agriculture has benefited from the genetic engineering of herbicide-resistant crops. 2. The active ingredient in Roundup, called glyphosate, is easily broken down in the environment and is thus a comparatively safe herbicide. 3. Making crops resistant to glyphosate means less tilling is needed, thus soils are saved from erosion and less fuel and expense are needed to raise the crop. C. More Nutritious Crops 1. Rice can be modified to contain more minerals, such as iron, and vitamins. 2. “Golden” rice has been genetically engineered to contain vitamin A, a vitamin that is normally insufficient in diets worldwide. D. How Do We Measure the Potential Risks of Genetically Modified Crops? 1. Consumers worry that eating genetically modified food might be dangerous or that GM crops are harmful to the environment. 2. Other than allergic reactions to modified proteins, dangers to the consumer appear to be slight. 3. Whether GM products are potentially harmful to the environment is not yet clear. 4. The first concern is the possibility of harming other organisms, and some studies have shown that in certain cases, GM modified crops may adversely affect insect populations by removing sources of food and cover. 5. The potential of resistance developing to GM crops is a possibility. 6. Because of gene flow, it may be difficult to control the spread of modified genes from the cultivated populations to the wild populations. KEY TERMS genetic engineering (p. 242) Moving genes from one organism to another. restriction enzyme (p. 243 ) Excising pieces of DNA is carried out using restriction enzymes. plasmid (p. 245) A plasmid is a tiny ring of DNA in a bacterial cell that can replicate on its own. clone library (p. 246) All of the clones of the original DNA collectively are called the clone library. probe (p. 247) A probe is a complementary sequence of nucleotides that is used to locate the gene of interest. PCR (p. 248) Polymerase chain reaction. cDNA (p. 249) Copy DNA. factor VIII (p. 250) One of the factors that leads to proper blood coagulation that is missing in one form of hemophilia. piggyback vaccine (p. 251) Making a piggyback vaccine involves inserting a gene for the microbe’s surface protein into a harmless virus. LECTURE SUGGESTIONS AND ENRICHMENT TIPS 1. DNA Fingerprinting. DNA fingerprinting employs small bits of semen, hair, nails, skin, or blood taken from a crime scene or from a victim of a crime. The DNA is isolated from these samples, and a restriction enzyme is employed to cut repetitive portions of DNA into portions of varying length. How long the restriction fragments happen to be is unique to each person. The fragments are then sorted according to length using gel electrophoresis—small fragments migrate further. A membrane is used to 53 2. blot the electrophoresis gel and pick up a print of the gel. Next, radioactively labeled DNA probes are used to mark certain sequences of nucleotides within the suspects’ DNA. The membrane is then used to expose X-ray film, and a DNA fingerprint, with a unique series of banding patterns, is the result. No two people have the same banding patterns, with the exception of identical twins. The probability that two people chosen at random have the same banding pattern is on the order of one in a billion. DNA fingerprinting is a very precise method of identification. How Will Genetic Engineering Impact Traditional Agriculture? If genetic engineering can produce plants with complete proteins so that humans have a diminished need to eat meat, what impact will this have on traditional agriculture—for instance, on beef and pork producers? Will people still want to eat beef, pork, chicken, and fish, or will they be willing to restrict their diets to plant nutrition only? Ask students for their opinions on this matter. It is possible that animal protein will eventually become less important as plant protein is improved. Are there, however, other nutrients supplied by animal flesh that one cannot get from plant sources in sufficient quantity? CRITICAL-THINKING QUESTIONS 1. 2. 3. Explain why processed mRNA is used for the manufacture of a gene to be inserted into a bacterium. How does cleaving DNA by using restriction enzymes facilitate the attachment of the cleaving DNA into the plasmid? If it is possible to genetically engineer crops to fix their own nitrogen, comment on potential effects this accomplishment will have on the world food supply. 54