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Download Review! Part 3 Cell cycle Order of events in cell growth and division
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Review! Part 3 Cell cycle o Order of events in cell growth and division into 2 daughter cells o Role of cell division In reproduction Growth Unicellular and Multicellualar organism o Terms Genome Chromosomes Somatic cells Gametes Chromatin o before division all DNA must be coped and separated to daughter cells o Cell cycle stages Interphase G1: o First gap ang growth G0: o Frezze growth S phase o Chromosome duplication, synthesis o G2: second gap, DNA repair more growth Mitotic phase Mitosis o Prophase Chromatin condenses into discrete chromosome Nucleoli disappear Mitotic spindle begins to form Centrosomes move apart o Prometphase Fragmentation of nuclear envelope Formation of kinetochore Invasion of microtubles into the nucleus and attachment to kinetochores o Metaphase Centrosomes are at the opposite poles of the cell Chromosmes move to the metaphase plate Formation of imaginary metaphase plate: alignment of all chromosomes at the centre Spindle formation o Anaphase Centromers separate and sister chromatids move toward opposite poles of the cell as their kinetochore microtubles shorten Nonkinetochore microtubeles elongate moving the poles further apart o Telophase Forming of nuclear envelope Chromatin is less condensed Mitosis is complete Cytokinesis Dividing the cell o Difference in animal and plant cells Animal: cleavage is form Contracting ring of microfilaments Plants: creation of a new plant cell o Bacteria Asexual reproduction Binary Fission Duplication of chromosome creates to origains of replications which separate and end up in both new cells See fig.12.11 in text The Cell cycle control Cell division is different between cells Rate of division o Chemical process/ signals Cell-cycle control system o A cyclically set of molecules in the cell that triggers and coordinates key events in the cell cycle o Chemical o Activtors S phase has an activator for G1 phase but not for G2 G2 does not stop replication o Checkpoints A controlled point on the cell cycle where stop and go ahead signals can regulate the cycle Checkpoints in G1 phase and G2 If the Cell does not get the go-head signal then the cell will go in G0 phase -> becomes dormant Cyclins and cyclin-dependent kinases o Regulatory molecules of the cycle transition are proteins of two mian types Protein kinases Regulate the activity of the others by phosphorylating them GO signal Cyclins Cyclically fluctuating concentration in the cell Cyclin-dependent kinases (Cdks) High in S and G2 phases MPF: maturation promotion factor M phase promoting factor Drops when the cell is dividing Promotes mitosis Internal Regulation o Anaphase promoting complex (APC) Anaphase will not start until APC is present This happens when all chromosomes are properly attached to the spindle at the metaphase plate External Regulation o Growth factors Is a protein released by certain cells that stimulates other cells to divide o Density-dependent inhibition Crowded cells stop dividing o Anchorage dependence In order to divide cells must be attached to a substratum (extracellular matrix of a tissue) Cancer o Does not respond to the body’s normal control o Divide excessively and invade other tissues o Do not have density-dependent inhibition Meiosis Terms o Heredity o Variation o Genetics o DNA o Genes o Chromosomes o Locus Specific location on a chromosome that contains a gene o Gametes o Haploid Number of chromosomes are reduced by half = n o diploid full amount when two gametes are fused together = 2n Sexual vs. asexual reproduction o Asexual One parent/ one set of DNA Offspring are genetically identical Results in a clone o Sexual 2 parent offspring each parent will pass half of their DNA = n creates genetic variation in a species Happens in eukaryotes Somatic cells: most cell in the body, divide by mitosis o 46 chromosomes =2n Gametes: germ line cells produced by meiosis o 23 chromosomes= n Karyotype o Arranging the chromosomes in to pairs o Sections Light= less dense, more genes expressed Dark= more dense, no genes are expressed Meiosis o Meiosis 1: separates homologous chromosomes (same shape size and similar types of genes carried but they are not identical) Prophase 1: pairing of homologous chromosomes pairs o process of linking in called synapsis o creates a tetrad Crossing over happens o Exchange of corresponding DNA Metaphase 1: Pairs of homologues chromosomes line up on the metaphase plate, Both chromatids of one homolog are attached to kinetochore microtubles from one pole Anaphase 1: Breakdown of proteins responsible for sister chromatid cohesion Tetrads separate (homologous pairs separate) and are drawn to opposite poles by spindle fibers Centromers remain intact Telophase 1 and cytokinesis: Cell seperates contains sister chromidts cleavage furrow o Meiosis 2: separates sister chromatids Prophase 2: Spindle apparatus forms Nuclear envelope dissolves Metaphase 2 Chromsomes alin on the metaphase plate Kinetochoreds of sister chromatids are attached to microtubules extending from opposite poles Anaphase 2: Breakdown of protiens holding the sister chromditds together at the centromere allows the chrmatids to separate Telophase 2 and cyctokinesis Nucli form, the chromosomes begin decondesing and cytokinesis occurs o Products 4 haploid cells Each of them are genetically different due to cross over Comparison btwn mitosis and meiosis o Mitosis Maintains plodiy More common Seperates sister chromadits o Meiosis Has a reduction phase/ two division stage Reduced ploidy level Happens only in gametes Spereates holomgus pairs and sister chromidts Gametogenesis o Creating gametes o Medellin Genetics Character Heritable feature that varies -> colour of flower Trait Each varient for a charter A genetic cross Can study the patterns of inheritance o Pea plants and varying flower colour 3 genreation of pea P generation F1 F2 o Hybrids o 3:1 ratio occurs Alleles Vartions of the same gene o Purple and white flowers On the same location of the chromosome Homologous pair of chromosomes represents an F1 hybrid His work showed o Each parent give one factor of each trait that is shown in the off spring o 2 members of each pair of factors segregate from each other during gamete formation o Dominant allele: fully expressed allele, determines the organism appearance o Recessive allele: no noticeable effect on organism’s appearance o Males and females contribute equally to the traits in their offspring Law of Segregation 2 alleles for a heritable character segregate (separate) during gamete formation and end up in different gametes Model for monohybrid inheritance 3:1 ratio in the F2 generation Dominant: appear in the F1 generation in crosses o all one colour Recessive: “skipped” in a F1 generation, only shown when dominat trait is not present Complete Dominance: the phenotype expression of alleles was either dominant or recessive -> not in btwn o Ture breading parents Incomplete dominance: neither allele is dominate over another Ie: red and white P generation flower, in F1 the off spring will be pink The ratio is 1:2:1 Codominate Alleles : 2 alleles both affect the phonotype in separate distinguishable ways ABO blood in humans o These blood types produce antibodies for both A and B types of blood Epitasis When one gene interferes with the expression of another o In Rats: there are 2 genes One codes for the expression of the colour of the coat Two codes if this colour will be expressed or not When the second is both receccive (cc) then the rat will show no colour since it interferes with the first gene Follows the ratio 9:3:3:1 Homozygous: a pair of identical alleles Heterozygous: two different alleles, dominant alleles is shown Phenotype: observable trait/ trait expressed Genotype: genetic make up Chromosmoal basis of segragation Arrangements of the chromosomes at metaphase 1 and separation at anaphase 1 account for the segregation and independent assortment of the alleles for seed color and shape o Segregation of alleles and fertilization Both and egg and sperm have 50% chance to receive either the dominate or recivesive alleles ½*½=¼ o Sex linked traits Accure on the X chromosome and will be phenotypic in males due to them only having one X chromosome. In woman they have XX causing the recessive trait to be “block” by the dominance on the other X XY- hetrogametic XX- homogametic Hemizygous -> sex linked genes Characters Common in males Sons can only receive from their mothers, daughters can receive from both mom and dad o Polygenic inheritance Is a pattern responsible for mant features that seem simple on the surface Traits are usally quantifed by measurement rather than counting 2 ore more gene pairs contribute to the phonotype Phenotypic expression of polygenic traits varies over a wide range o Pleiotrophy A single gene on more than one characteristic Frizzle-trait in chickens o Both good and bad results o The control of gene expression can occur at any stage The nuclear envelope separated transcription from translation RNA processing is absent in bateria DNA replication: creating new strands of DNA o Consists of a ribose, phosphate and nucleotide A=T, C=G U replaces T in mRNA o 3 models of replication Conservative model: ceates 3 whole new copies and 1 whole old copy Semiconsoervative: 2 old strands, 6 new -> second replication Dispersive: old and new parts of the DNA are mixed together o Origins of replication Orgin: where replication is started Replication fork: where the origin the strands split Replicon: the unit of DNA in which an individual act of replication occurs Split by Helicase o The strands are anitparallel Leading strand 5’ – 3’ -> continuous synthesis = sense strand Synthesized as a single polymer 5’ -> 3’ direction towards the replication fork = anti sense strand Free nitrogestius base from the cell are used Lagging strand 3’ – 5’ -> discontinuous synthesis Synthesized against the overall direction of replication Polmerase synthesis a short RNA primer Okazaki fragments: series of fragments on the lagging strand DNA ligase: gules the lagging strand together o Primer Short RNS segement that is a compentry to the DNA Necessary to start replication Leaves a gap at the end of the DNA strand; this causes the strand to be shorter than the parental DNA, these nitrogous bases get broken off, Non coding RNA o Telomeres Do not contain genes 6 nulecoditde sequence protects genes shortens over a pereons life spand Non coding Transcription: the synthesis of RNA using DNA as a template o Prokaryotic cells mRNA is produced by transcrption is imedilately translated without additional processing o Eukaryotic cells 2 stages Transcription and translation Transcription happens in the nuclear envelope o Create mRNA Translation happens in cytoplasm on ribosome t create proteins o Codons Start codon AUG Stop UAA UAG UGA o Steps of transcription Initiation RNA polymerase binds to the promoter -> TATA box Working in 5’-3’ direction = uses the lagging strand to create the mRNA Transcription factors bind to the DNA before RNA polymerase does so Elongation Polymerase moves downstream unwinding the DNA and elongating the RNA transcript Once the strand has created the RNA then the double helix will reform Termination The RNA transcript is released and the polymerase detaches from the DNA Proceeds until RNA polymerase transcribes a DNA sequence called a terminator o AAUAAA RNA polymerase performs 2 functions Untwist and opens a short part of the DNA exposing about 10 nucleotide bases Links incoming RNA nulecolditeds to the 3’ end of the elongating strand: thus RNA grows one nuleotide at a time in the 5’ to the 3’ direction As the strand builds Peels away from the DNA template The non template strand of DNA reforms the DNA Alterations of pre-mRNA ends 5’ cap modified guanine necleotide, that is addded to the 5’ end of mRNA shorthly after transcprtion begins Poly-A tail o Sequence of about 0-200 adenine nelocotides added to the 3’ end of the mRNA before it exits the nucleus Functions o Facilate the export of mature mRNA from the nucleus o Protect mRNA from degradation by hyrolytic enzymes o help ribsome attach to the 5’ end of the mRNA once the mRNA reaches the cytoplasm Split genes and RNA splicing o Introns Noncoding sequences in DNA that are between coding squences o Exons Coding sequences of the gene that are transcribed and expressed o Small nuclear ribonuleoproteins (snRNPs) Complexes of proteins and small nuclear RNA that are found only in th nucleus Help in some of RNA splicing Composed of Small nuclear RNA Protein o RNA splicing The removals of introns and the joining of exons Enzymes excise introns and splice exons to form mRNA with continoius coding squence Happens during post-transcriptional processing of tRNA and rRNA o Functional and evolutionary importance of introns Direct the synthesis of differencr proteins and may can gene activity Splicing process may help in regulating the export of mRNA into the cytoplasm May allow single gene to direct the synthesis of different proteins Eveolution protein diversity Increse the probability that recombination of exons will occur between alleles Translation: synthesis of a polypeptide which occurs under the direction of the mRNA o Tranfers RNA -> tRNA The message is a series of codons along an mRNA molecule and the interpreter Each tRNA has a specific anitcodon at one end a corresponding a.a at the other end Consist of anitcodons A nucleotide triplet in TRNA that base pairs with a complementary codon in mRNA Wobble The ability of one TRNa to recognize 2 or 3 different mRNA codons o Ex. The anitcodon UCU can code for either the mRNA codon AGA or AGG Aminoacyl-tRNA synthetases The process of correctly paring a tRNA with its appropriate a.a Ribosome Consists of two subunits Has one mRNA binding site and 3 tRNA sites o A site: first site where the tRNA comes into the ribosome o P site: holds the tRNA attached to the growing polypeptide o E site: tRNA leaves the ribosome o Steps Intionation Require energy provided by GTP Sm. Subunit binds to a molecule of mRNa The initiator tRNA with the anitcondone UAC (AUG start codon) o This tRNA carries the a.a methionine (Met) Completing initiation is when the large ribosomal subunit Elongation Require energy provided by GTP ->increases the accuracy and efficiency Moves the mRNA in a 5’ – 3’ direction Step 1: codon recognition o The anitcodon of an incoming aminoacyl tRNA base- pair with the complentray mRNA codon in the A site o GTP is used btwen step 1 and 2 Step 2: Peptide bond Formation o An rRNA molecule of the large ribsomsal subuint catalyzes the formation of peptide bond btwn the new a.a in the a site and carboxyl end of the growing peptide chain o GTP is used btwn the end of step 2 and begging of step 3 Step 3: translocation o The ribosome translocates the tRNA in the a site to the P site is moved to the E site where it is released o The mRNA moves along the with its bound tRNA bringing in the next codon to be translated into the a site Termination When the ribosome reaches the termination codon (UAG UAA UGA) on a strand of mRNA the a site of the ribosome accepts a protein called a release factor instead of a tRNA Uses GTP o Functional Protein Post-translatlation modifaction Affects functions by affecting protein structure Chemical modification o Sugars, lipids, phosphate groups or other additives may be attached to some a.a Signal peptide Attached to the outside of the endoplasmatic reticulum bound ribsomes generally make proteins that are destines for: o Membrane inclusion in membrane component of the endimebrane system o Partitioning into the luminal compent of endomenbrane system o Secretion from the cell -> hormones Singal mechanism for targeting proteins to the ER Polypeptide sysnthesis begins on a free ribsome in cytosol A singal-recongnition particle SRP binds to the singal peptide o Mutations Types Substitutions o Minssence mutations No affect on protein – silent Changes one a.a to another o Base pair substation Replacement od one nueleotide and its partner with another pair nucleodtieds o Nonsence mutation Changing a codon for an a.a into a stop codon Inertions and Deletions o Adding or losing of nuleotides o Base pair insertion o Base pair deletion o Frame shift mutations Virus o Reproduce only within a host cell Obligate intracellular parasites Reproduce only within a host cell No metabolism and no ribosomes -> cant make their own proteins Host range The host range of a virus is defined by o The tissue type the virus can infect o The species it can infect and multiply in Susceptibilty The cell’s or animals capacity to become infected o Factors Permissivity Infection of permissice cells results in production of infection Virus is released Nonpermissive Results abortive infection where susceptible cells may aloe expression of only viral genes o Causes no infectious virions are produced Transiently permissive cells Results in restrictive infection Few viral progent are produced Viral genone perisist in cell Infected cells may still be transformed and suffer the affects of the viral genes o Reproductive cycle Viral envelop which helps the parasite enter the cell Glycoproteind recognize and bind to specific receptors molecules on the surface of the host cell The viral envelope fusses with the cell’s plasma membrane and capsid and viral genome enter the cell o Lysogenic and lytic reproductive cycles Lytic: destroys cell and creates new bacteria Lysogenic: DNA of the virus and the cell become one o o Virulent virus: virus that reproduces only by a lytic cycle Temperate viruses: viruses that are ab;e to use both modes of reproduction o Virus classification I) dsDNA viruses II) ssDNA viruses III) dsRNA viruses IV) (+) ssRNA viruses V) (-) ssRNA viruses (Influenza) VI) RNA Reverse Transcribing Viruses (AIDS, leukemia) VII) DNA Reverse Transcribing Viruses o Email sent about types of RNA 1) mRNA - coding RNA since it codes for proteins 2) tRNA is a non-codinng RNA (ncRNA) interprets messages from RNA to make a protein 3) rRNA is a ncRNA found in the ribosome, stabilize translation 4) snRNA/snoRNA are ncRNA used to splice introns from exons 5) miRNA -ncRNA that regulates translation by cleaving the mRNA transcript 6) siRNA -ncRNA that has triple function: mRNA cleavage -similar to miRNA; translation inhibition via binding to the 3 prime UTR; DNA methylation and prevention of transcription from occurrence. 7) piRNA -ncRNAs that are inhibiting transcription from transposons in germ cells (sperm). Signal Transduction Part 1 o Feed back loops Negative feedback Slows down/ stops the process Chemical Ex. Function of hunger Positive feedback Speeds up the process Function of platelets in the formation of clot o Levels of biological organizatin Biosphere Biomes Ecosystems Comminty Population Organuism Organs. Organ systems Tissues Cells Organelles Molecules Neoulotide DNA Genes o Three domains Domain bacteria Prokaryotes Domain Archaea Prokatyotes Domain Eukarya Eukaryotes o Five kingdoms Prokaryota Under the bateria and archaea domain Protista Under the Eukarya Fungi Under the Eukarya Plantae Under the Eukarya Animalia Under the Eukarya o Taxonmony Kingdom Phylum o o o o Class Order Family Genus Species Charles Darwin Theory of natural selection Individual variation Struggle for existence Eukaryotes vs. prokaytroes Eukaryotes Membrane bonded organalles Subdived by internal membranes Larger size -> 10x Prokaryotics DNA is not separated from the rest of the cell by enclosed membrane bound nucleus Have a cell wall composed of petidoglcan-> single layer of a.a and sugar Major differences The prsence of a nuelecus Internal membranes – eukaryotes Sepertition of genetic material Plant cell structure Cell wall and plasma membrane surrounds the cell Contains Nucleus Ribsomes ER Golgi apparatus Peroxisomes Mircoflimaents Microtubles Chloroplast Helps in photosynthesis o Sunglight -> sugar and other organic materials Central vacuole Stroes chemicals Breaks down macromolecule Helps in plant growth Animal Cells Contains Nucleus Nuclear Ribsomes ER Golgi apparatus Lysosme Mitochondria Vacuole Centromeres o Ribosomes Sites of protein suythesis Not mebrane-bound In both euk and pro. Bound ribosomes Attached to the ER Produce sectetory proteins Free ribosomes Mainly make proteins that will remain dissolved in the cytosol o The Endomembrane system: either connected directly or help in transport material Nuclear envelope Takes the RNA that the nucleus has decode and transports the RNA to the Rough ER through pores ER Rough: responsible for protein synthesis through ribosome that are located on the Rough ER, undergoes modifications oligosaccharide -> glycoprotein, leave in a transport vesicle Smooth: responsible for fats and lipped synthesis, carbohydrate metobolism, detoxifies durgs and poisons, stores calcium ion necessary for muscle contraction Golgi apparatus: Housing and manufacturing of the products from the rough ER has created o Two phases Cis Face (top) -> recives product Trans Face (bottem) -> pinches off vesicle from golgi and transports to other parts Lysosomes Detoxification, intercellular digestion, cell destruction and garbage disposal Have sequesters potentially destructive hydrolytic enzymes from the cytosol Maintains the optimal acidic environment Vacuoles Storage of food and water for the cell Transport vehicle Central vacuole (tonoplast) Plasma membrane Transport items in and out of the cell Lets certain thing in and keeps others out Other parts of the cell not part of the Enodometrium system Mitochria o Site of celluar resp o Creates ATP o Own DNA Chorloplast o Site of photosythsis Peroxisomes o Cytoplasm Cytoskeleton Helps maintain/change shape Microtubules o Cell division serves as a temp. scaffolding for other organelles Actin microfilaments o Helps in cell division and motion Intermediate filaments o In between the size of microtubules and actin filaments Ultrastructures Basel body o Anchored in the cell o Nine doublets of the cilium extend into the basal body o STRONGEST STRUCTURE Motor proteins o Kinesin moves organelles towqrds periphery (+) o Dinein toward the nucleus (-) o Intercelluar junctions in aminals Tight junction Cont. belt Seals the cell Prevents leakage Desomsomes- anchoring junction Fasten cells together Gap Junctions – commincation junction Commincation Channels between cells o Plant cells 3 kinds of tissue Dermal Ground Vascular o Animal Cells Epithelial tissue Covers body surface and lines body cavities Simple of stratified Functions o Loning o Protecting o Forming glands Kinds o Squamous: flatten o Cuboidal: cube- shaped cells o Columnar: elongated cells Pseudostratifed o single layer of cells shaped to look like 2 layers Connective tissue Loose connectove tissue(LCT) Adipose tissue Fibrous concctive tissue (FCT) o Tendons o Ligaments o bone Cartilage Bone Blood 3 fiber types o callagenous o Elastic o Reticular Nervous system Nervous tissue Nuroms Axons Dendrites Neurons Glial cells Muscle tissue Skeletal (striated) Smooth Cardiac o Bacteria 3 kinds of Structre Cocci- spherical prokaryotes Bascilli- rod shape Helices – helical prokaryotes Cell wall Peptidoglycan Gram- positive, simpler wals with large amount of ptg Gram- negative, more comples wit less ptg. The outer membrane contains lipoplysacharides, carbohydrates bonded to lipids Rapid growth Transdormation o Genes are taking from the surrounsinf enviroment Conjugation o Direct gene transfer from one prokaryote to another o F factor -> ability to form sex pili and donate DNA during conjugation Transduction o The gene transfer by viruses Generalized Random pieces of the host cell DNA are packaged within a phage capsid during the lytic cycle of a phage specialized when a prophage excises from the bacterial chromosomes and carries with it only certain host genes adjacent to the excision site R plasmids and anitbotic reisistance Plasmids that carry resistance genes o Nutritional and metabolic diversity Engery soruce Energy Carbon o o o o o Photoautotroph Chemoautotroph Photoherotrophs Chemoheterotrophs Water dissociation Acidic more H+ molecules Basic more OHOrganic molecules Fromed by the actions of living things Have a carbon backbone Isomers Structual Gemoetric Enantiomers Functional groups Hydroxl group: Polar, water soluble, alcohol Carbonyl group: Polar, water soluble, found in sugar Carboxyl group: Polar, water soluble, Donates protons, has acidic properties Amino group: Polar, water soluble, acts as a week base, Nitrogen is present Phosphate group: diccoated, -tive charge acid pro, Sulfhydryl group: consists of a sulfur atom bonded to an atom of hydrogen Polymers Classes Carbs Proteins Lipids o Phospholipids o Steroids Nucleic acids Creation of a polymer Dehydration -> getting rid of a water molecule Part 2 o Membrane structure and function 2 models sandwich fluid mosaic model Membrane Consist of phosiophilid by layer o These phosiphilies are fuild Lateral Flip-flop Cholestrol Structure o Reduces fuiltiy in membrane