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Pathophysiology 101-823 Unit 2 Genetics & Genetic Disease Patterns of Inheritance of Genetic Disease Paul Anderson 2017 Learning Objectives 1. Explain Mendelian inheritance of genetic traits in humans (Law of Segregation & random fertilization). 2. Define: homozygous, heterozygous, carrier, dominant recessive, genotype, phenotype. 3. Use a Punnett square to show expected offspring of single gene disorders & interpret a pedigree chart. 4. Describe the inheritance pattern of Autosomal Recessive traits, Autosomal Dominant traits & Sex (X) Linked conditions in humans with examples. 5. Describe the inheritance & manifestatons of Huntington Disease; describe the inheritance pattern of Myopia & Hereditary Retinoblastoma (Retinoblastoma Susceptibility). 6. Describe the inheritance, phenotype & manifestations of cystic fibrosis, Tay Sachs, Albinism & PKU; for PKU describe screening & treatment: for CF describe basic pathophysiology. 7. Define Incomplete Dominance & describe the inheritance of Sickle Cell Anemia (Sickle Cell Disease) & Familial Hypercholesterolemia. 8. Define codominance & describe the inheritance of the human blood types A, B, AB & O. 9. Describe the inheritance pattern, major manifestations & treatment of Hemophilias. 10. Describe the risk factors and manifestations of Schizophrenia; explain why it is considered to be multifactorial. References: Martini & Bartholomew, Essentials of Anatomy & Physiology,7th ed. Ch. 20, pp. 695-698 Porth, Pathophysiology, 2nd Can. ed. Ch. 6, pp. 133-135: Ch. 7, pp. 141-147 Ch. 53, pp. 1385-1386, (Schizophrenia, pp. 1393-1396), (Huntington, pp. 1409): Ch. 54 Retinoblastoma, pp. 1342-1343. Porth, Essentials of Pathophysiology, 4th ed., Ch.5, pp. 98-99: Ch. 6, pp. 107-114: Ch. 7, p.138. Mendelian Genetics • Modern genetics began in about 1857 when a Czech Monk - Gregor Mendel began studying inheritance in pea plants. • Mendel used peas to study how inherited traits passed from parent to offspring. • Mendel was the first person to discover the basic rules for genetics. Genetically different pea plants Mendel’s Law of Segregation • For each inherited trait an individual has 2 factors (now called genes) one inherited from each parent. • The 2 factors may be the same or different. • The 2 factors separate out (or segregate) in forming gametes so that each gamete has only one factor) Diploid Parent Cell Haploid gametes We now know that: • Mendel’s factors are genes. • Genes exist as alternate forms called alleles. • Genes are carried on chromosomes which segregate in Meiosis I forming haploid gametes from a diploid parent cell. We Inherit One Copy of a Gene from Each Parent We now know that: • Haploid gametes carry one copy of each gene. • Fertilisation between haploid gametes restores the diploid number of chromosomes with two copies of each gene. One set of genes from Mother One set of genes from Father Haploid gametes Diploid Zygote Offspring inherits two sets of genes Dominant & Recessive Alleles • Alleles are alternative versions of a gene (e.g. alleles for normal skin colour or for albinism). • New alleles are originally formed by gene mutations but usually we inherit them from our parents. • Mendel discovered that some alleles (Mendel -“factors”) are always expressed, i.e. produce a visible result: we call these dominant alleles. • Mendel discovered that other alleles are only expressed when two are inherited: we call these recessive alleles. Dominant alleles are symbolised in upper case, Recessive alleles with lower case. Examples: A allele for normal skin colour (dominant) a allele for albinism - absence of skin colour (recessive) Genotype vs Phenotype • The particular combination of alleles an individual has is referred to as the individual’s genotype • The genotype is symbolised with gene symbols, e.g. AA, Aa or aa. • The visible expression of genes in an individual is referred to as the phenotype, e.g. albino or normal skin colour. The genotype and phenotype may differ. • A person who has two identical alleles is homozygous & both genes will be expressed in the phenotype, e.g. AA (normal skin colour) or aa (albino) • A person who has two different alleles is heterozygous, e.g. Aa & only the dominant allele (normal skin colour) will be expressed in the phenotype. • The heterozygote for recessive traits is called a carrier since the person does not show the trait but can transmit it to offspring. Use of Punnett Squares Mendel discovered that Heterozygous parents • Fertilisation is a random process. • The proportion of different offspring could be predicted based on laws of chance (probability). This can be shown by a Punnett Square which combines the gametes from each parent in all possible combinations. Dd Dd 1/2 D 1/2 d sperm Homozygote Heterozygote dominant D DD Dd Heterozygote Homozygote recessive 1/2 ova 1/2 d Dd dd offspring Genetic Disorders (Disease) Genetic Disorders are caused by inherited gene mutations or chromosomal mutations. Gene Mutations Single Gene Disorders Multifactorial Disorders Genetic Disorders Chromosome Mutations Crossover errors Non Disjunction Single Gene Disorders About 8000 Single Gene Disorders are known, caused by a mutation to a single gene: most follow one of three patterns. • Autosomal Dominant Disorders: the allele for the disorder is on an autosome & is dominant. Examples: - Huntington Disease - Risk for Hereditary Retinoblastoma - Familial Hypercholesterolemia - Myopia • Autosomal Recessive Disorders: the allele for the disorder is on an autosome & is recessive. Examples: - Enzyme Deficiency Diseases (e.g. albinism, PKU, Tay Sachs) - Cystic Fibrosis - Sickle Cell Disease - Xeroderma Pigmentosum • X Linked Recessive Disorders: the allele for the disorder is on the X chromosome & is recessive. Examples: - Hemophilias - Colour Blindness Using Pedigrees to Determine Genetic Patterns • A pedigree is a chart used to determine the pattern of inheritance for human genetic traits. • A pedigree is a family tree showing known phenotypes for any given genetic trait, generation by generation. • Males are shown by squares, females by circles and individuals with the trait in question are shaded. Carriers for recessive traits may also be identified. • Autosomal disorders appear with equal frequency in males and females. • Identify the genetic pattern shown by this pedigree. Autosomal (could be dominant or recessive) Hh Hh hh hh Hh Hh Most likely a Dominant trait hh Hh hh Hh hh Characteristics of Autosomal Dominant Disorders • In Autosomal Dominant Disorders only one allele needs to be present for the disorder to show. • Dominant disorders show a “gain” in abnormal function due to the presence of the mutated gene’s protein. • Huntington Disease (HD or Huntington’s Chorea) is a rare (1 in 10,000) degenerative fatal neurological disorder caused by a dominant autosomal allele. • HD like many other neurodegenerative diseases (Alzheimers, Parkinson, ALS) causes a misfolding of a brain protein. • In HD the abnormal protein huntingtin builds up & prevents other proteins from breaking down. • Build up of proteins causes cellular injury and death. • HD is a brain disorder with atrophy of basal ganglia & frontal cortex. Manifestations of Huntington Disease • HD is typically delayed onset (appears in late 30s– 40s). • Early signs of HD are depression, personality changes, clumsiness and slurred speech. • This is followed by progressive, uncontrolled patterns of involuntary movements especially of hands, face eyes and tongue (chorea). • Psychological (cognitive) deterioration follows leading to dementia. • Chorea is replaced by akinesia (absence of movement) and eventually rigidity. • Patients may live for further 10-20 yrs after onset of signs & usually die from infections. • HD allele is at tip of chromosome 4 so (since 1993) DNA can be directly tested before signs appear. Inheritance of Huntington Disease Typical Pattern of Inheritance Affected parent Hh h H Normal Parent hh h Hh hh h Hh hh 1/2 children affected Woody Guthrie 1912 - 1967 Rules for Dominant Autosomal Traits • A dominant trait will not appear among offspring unless it also appears in one or both parents. • When a dominant trait is rare in a population most affected persons are heterozygotes. Therefore if one parent has the trait typically half the children will be affected (e.g. Huntington). • Dominant traits may show variable penetrance (some individuals with the dominant allele do not show the trait). • Huntington Disease has a high penetrance (close to 100%) so risk of a person with Huntington allele getting the disorder is very high & it does not “skip” generations. • Dominant traits may show variable expressivity (allele can be expressed differently in phenotypes). • In Huntington Disease some affected persons show dementia, others do not. Pedigree for Huntington Disease Myopia: A Dominant Autosomal Trait Early Onset Myopia, or Near Sightedness, is an autosomal dominant condition in which distant rays of light converge before striking the retina, causing blurred vision. However, the myopic person can see near objects clearly. • Myopia is caused by a lens which is too convex, or an eyeball which is too long. • The condition may be corrected with concave lenses or by radial keratotomy which surgically (or using laser) alters corneal curvature. Inheritance of Retinoblastoma Susceptibility • Retinoblastoma is a rare type of eye cancer in infants caused by a gene mutation on the RB gene on chromosome 13. • RB is a Tumor Suppressor gene: its protein product stops the cell cycle of DNA damaged cells at G1. A recessive gene mutation forms an abnormal protein that it is unable to regulate cell division. • Two mutations (one on each homologue) are necessary to cause RB. • In 50% of RB cases a single inherited (germline) mutation gives an increased risk of developing Inherited Retinoblastoma, an autosomal dominant pattern for Retinoblasoma Susceptibility. For Retinoblastoma to develop, a second somatic mutation must occur in the other copy of the RB1 gene in retinal cells during the person's lifetime (“Two - Hit Hypothesis for cancer”). Increased risk Porth fig. 8-6. Porth Essentials fig. 5-7 Autosomal Recessive Disorders • Recessive disorders show a “loss” of normal function of the mutated gene’s protein, e.g. “Enzyme Deficiency Diseases” or “Inborn Errors of Metabolism”. • In most Autosomal Recessive DisordersThe normal allele is completely dominant so heterozygotes appear normal. • However, even with Complete Dominance the heterozygote produces 50% of the normal protein so carriers of recessive disorders can be identified biochemically. • Tests for deficiency of the gene product (an enzyme) can now identify carriers of PKU and Tay Sachs* (both Recessive Enzyme Deficiency Disorders). *Tay Sachs is a fatal childhood disorder affecting the brain & retina caused by the absence of a lysosomal enzyme that catabolises lipids. Accumulation of lipids causes mental & motor deterioration by 10 months with increasing flaccidity, seizures & eventual blindness. Recessive Autosomal Traits: Albinism • Albinism is a homozygous recessive trait resulting in enzyme deficiency which causes suppression of normal production of the dark melanin pigment in the skin, hair and iris. • Albinos are very sensitive to sunlight and so must avoid exposure and be screened for malignant changes in the skin and eyes. Typical Pattern of Inheritance Both Parents non- affected carriers Aa A a A AA Aa a Aa aa 1/4 children affected Child with albinism Rules for Recessive Autosomal Traits • Recessive Traits commonly "skip" a generation affected child can be born to non - affected parents so frequency of affected individuals in a pedigree is usually small. • If two unaffected) parents have an affected child it will only occur 25% of the time. • When two recessive (affected) individuals have children they are all affected. • Autosomal Recessive disorders tend to be early onset with uniform clinical manifestations. • The protein deficiency in autosomal recessive disorders often causes multiple phenotypic effects. Pedigree for Albinism! Inheritance of Phenylketonuria (PKU) • PKU is an Autosomal Recessive Disease with an incidence of 1 in 10,000-15000 births. • PKU is caused by absence of the hepatic enzyme phenylalanine hydroxylase (PAH) which normally converts one amino acid (phenylalanine) to another (tyrosine) by adding –OH. • PKU is thus an Enzyme Deficiency Disease or “Inborn Error of Metabolism”. • A child can inherit the disease from normal parents who are heterozygous carriers. Manifestations of Phenylketonuria (PKU ) • In PKU there is an increased concentration of phenylalanine (substrate for PAH). • Excess phenylalanine is converted by the liver to phenylpyruvic acid (a phenyl ketone). • Phenylalanine & Phenylpyruvic acid reach high levels in blood, toxic to developing brain of infant, causing severe mental retardation, microcephaly, delayed speech etc. • In PKU decreased concentration of the product for PAH (tyrosine) leads to deficiency of the skin pigment melanin (so less colour in hair, skin, iris). Metabolism in PKU Disease Diet Hepatic Enzyme missing in PKU Phenylalanine Pathway in PKU Phenylpyruvic acid Brain toxic to developing brain ↓IQ ↓Development Low IQ & poor brain development in PKU Enzyme Phenylalanine hydroxylase (PAH) Tyrosine Normal Pathway melanin normal skin, hair, eye colour reduced in PKU Urine (Phenylketonuria) Screening & Treatment for Phenylketonuria (PKU ) • Phenylalanine & phenylpyruvic acid can be detected in blood & urine (“phenylketonuria”) of affected newborns. • Newborns are routinely screened for PKU from a few drops of blood from the heel within the first 72 hrs. • Carriers of PKU have 50% of the normal enzyme so can be detected via a test that measures how quickly an oral phenylalanine dose is metabolised & disappears from the blood. • Treatment for PKU consists of a phenylalanine reduced diet for life & must begin by 10 days after birth. Genetics of Cystic Fibrosis • Cystic Fibrosis is the most common lethal genetic disease in Caucasians affecting 1 in 2500 with 1 in 25 (4%) being carriers. • Typical of recessive disorders CF shows early onset, appearing soon after birth. • The Allele for CF (Cystic Fibrosis) is on chromosome 7: the most common mutation is a codon deletion (one amino acid – phenylalanine missing). • DNA Mutation analysis can be used for prenatal diagnosis and for carrier testing in families with a previously affected child. N:Normal allele C: Cystic Fibrosis allele Like other recessive disorders 2 carriers (NC) have a 1/4 chance of a child with CF. Basic Pathophysiology of Cystic Fibrosis • The CF gene codes for a chloride channel membrane protein (CFTR*). • The CF allele results in decreased chloride transport across mucosal epithelial cells. • Failure of epithelial cells to transport chloride results in - sticky, viscous mucus secretions in respiratory tract, pancreas, GI tract and other exocrine tissues. - excessively salty sweat • More viscous mucus may lead to obstructions in respiratory and digestive systems and impaired pancreatic function. *CFTR: Cystic Fibrosis Transmembrane Regulator. Incomplete Dominance • In some single gene disorders one allele shows Incomplete Dominance over the other allele so the heterozygote shows an intermediate phenotype (milder form of disorder). • Examples of Incomplete Dominance include - Sickle Cell Disease (recessive) - Familial Hypercholesterolemia (dominant). • Familial Hypercholesterolemia is a primary (inherited) form of hypercholesterolemia caused by a mutation in the gene for LDL receptor proteins in cell membranes (mainly the liver). • LDL carries “bad cholesterol” so as a result cells with defective LDL receptors cannot take in LDL and blood cholesterol levels stay high. • Heterozygote (LDL cholesterol <13 mmol/L) shows delayed onset disease, & usually has heart attack before 40 years. • Homozygote child (LDL cholesterol <26 mmol/L) may have heart attack before 2 years of age. Sickle Cell Anemia • Sickle Cell Anemia is an autosomal recessive disease in which the recessive allele causes a single amino acid substitution in the beta chains of hemoglobin. • Homozygous recessives form abnormal hemoglobin which causes sickling of red cells when oxygen concentration is low (e.g. with activity) • Hemolysis of the abnormally shaped fragile erythrocytes cause a severe hemolytic anemia with circulatory blockages which shorten the life span. • The normal allele shows Incomplete Dominance so Heterozygotes are phenotypically normal but have a mixture of the 2 Hbs and may develop a mild anemia at low O2 levels (Sickle Cell Trait). • On a molecular level each allele produces its protein product (i.e. normal or sickle cell hemoglobin) in the heterozygote. Genetics of Sickle Cell Anemia • 10 % of African Americans are heterozygous, while only 0.2% are homozygous recessive. • Usually a child with sickle cell disease is born to 2 heterozygous carriers with Sickle Cell Trait who have a 1/4 chance of having a child with Sickle Cell Anemia. Phenotypes Normal SS Sickle cell Trait Ss Sickle cell Anemia ss S s S s 1/4 ss Inheritance of Human Blood Types • Codominant alleles are dominant alleles that are fully expressed in the HETEROZYGOTE when both are present. • The major Human Blood Types (A, B, AB and O) are caused by the inheritance of 2 codominant alleles A and B and a third recessive allele O at the same locus giving 6 possible genotypes & 4 phenotypes. • Each codominant allele A or B causes the production of polysaccharide antigens (A or B) on the surface of erythrocytes whereas the type O individual (double recessive) has neither A nor B antigens. Genotypes AA or AO Phenotypes; Type A BB or BO Type B AB Type AB OO Type O A O B A B B O O A O O O Complete the Punnett square for a man of type A & a woman of type B, each of whom had a parent of type O. Sex (X) Linked Disorders • Sex Linkage refers to the pattern of inheritance for genes carried on the sex chromosomes (usually the X). • Each X chromosome carries ~1,200 genes, whereas Y is non - homologous & contains fewer (231) genes. • Males have only one allele for each X linked gene so X linked disorders are more common in males (male genotype is hemizygous). • Males inherit the trait from their mother who is usually an unaffected carrier. • If the mother has the disorder all sons will be affected. • Daughters inherit the disorder from both parents. • Males transmit the trait to daughters only. X Y X X XY X X X XY X Location of Genes for X - Linked Disorders X Chromosome Porth fig. 6-12. Porth Essentials fig. 3-9 Hemophilias hemophiliac allele: Xh normal allele: XH • X linked disorders include hemophilias, blood clotting disorders caused by an inability to produce a specific protein clotting factor by the liver • In Hemophilia A factor VIII is missing or deficient: incidence 1/5000 of male births. • In severe cases internal bleeding occurs in childhood especially in GI tract & joints (when child first walks). • Treatment involves replacing missing factor VIII by intravenous injection. • 30% of cases have no family history so are new (somatic) mutations. Y XH XH XH XH XH Y Xh Xh XH Xh Y Usual Pattern • Mother a carrier: father normal • Half sons hemophiliac • Half daughters are carriers Note: males are hemizygous for sex linked genes Hemophilia in the Royal Families of Europe Multifactorial Inheritance • Many human genetic traits are controlled by the interaction of many non - allelic genes (called polygenes) at different loci. • Polygenes are affected by environmental influences such as nutrition, hormones, prenatal environment etc. so these traits are also called multifactorial. • Multifactorial Inheritance in adults involve an inherited genetic predisposition for such traits as o height o Weight o athletic ability o IQ o Disorders such as hypertension, CHD, diabetes type 2 and Schizophrenia. Manifestations of Schizophrenia • Schizophrenia is a delusional psychotic disorder (often with hallucinations) first appearing usually in young adults (17-25). • Schizophrenia affects thought and language causing delusions, disorganised (incomprehensible) speech, visual and auditory hallucinations and sometimes catatonic behaviour (state of apparent inertia or stupor with muscle rigidity. • Positive symptoms of schizophrenia include delusions or false beliefs, hallucinations, abnormal perceptions without external stimuli. • Negative symptoms of schizophrenia include apathy, withdrawal and lack of emotions. Multifactorial Inheritance & Schizophrenia • Schizophrenia is associated with disturbed neurotransmitter activity (e.g. increased dopamine receptors in the basal ganglia) with anatomical & functional changes in the forebrain. • Schizophrenia risk is increased by 10x if there is an affected close family member so has a strong genetic component. • Cannabis use in young adults often triggers the first psychotic episode so is now considered a risk factor (increases risk 3x).