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Comparison With Photosynthesis Photosynthesis Respiration Where? In chlorophyll-bearing cells In all cells When? In the p presence of light g All the time Input Carbon dioxide and water Reduced carbon compounds and oxygen Output Reduced R d d carbon b compounds, oxygen, and water Carbon dioxide and water Energy Sources Light Chemical Bonds Energy Result Energy Stored Energy Released Chemical Reaction Reduction of carbon compounds Oxidation of carbon compounds Energy Carrier(s) NADP NAD and FAD Cellular Respiration: A O An Overview i Cellular respiration consists of a series of pathways by which carbohydrate and other molecules are oxidized for the purpose of retrieving the energy stored in photosynthesis and to obtain carbon skeletons used in the growth and d maintenance i off the h cell. ll Comparison of Photosynthesis and d Respiration R i i • Photosynthesis: 6 CO2 + 6 H2O → C6H12O6 + 6 O2 light plant light, • Respiration: R i ti C6H12O6 + 6 O2 + 6 H2O ↔ 6 CO2 + 12 H2O (Hexose) Perspective from a Chemical S d i Standpoint • Respiration p represents p the oxidation of a 12carbon molecule sucrose and reduction of 12 molecules of CO2. C12H22O11 + 13 H2O → 12 CO2+ 48 H+ + 48 e12 O2 + 48 H+ + 48 e- → 24 H2O • Net Reaction C12H22O11 + 12 O2 → 12 CO2 + 11 H2O 60 ADP + 60 Pi → 60 ATP + 60 H2O Respiration • Anabolism: formation of large g molecules from small molecules; requires an input of energy. • Catabolism: degradation or breakdown of large molecules to small molecules; this process often releases energy. – Respiration is the major catabolic process that gy in all cells. releases energy – Respiration involves oxidative breakdown of sugars to CO2 and H2O. O Respiration • Respiration is a multi-step multi step process in which carbon is oxidized through a series of reactions, which can be divided into four stages: 1. Glycolysis (Embden-Meyerhoff-Parnas) 2. Tricarboxylic Acid Cycle (TCA or Krebs) 3. Oxidative pentose phosphate pathway 4 Electron Transport Chain (ETC) 4. Respiration • Glucose is commonly y cited as the main substrate in respiration; however, the reduced carbon may come from many sources such as: • • • • • • • Starch Sucrose Fructose Other sugars Lipids Organic acids Proteins Overview of Respiration Respiratory Metabolism Glucose O2 NAD+ TCA Cycle Respiratory Chain Pyruvic acid H2O NADH CO2 C t l Cytosol Mit h d i Mitochondria Adapted from Intro. Plant Physiology, 2nd edition; (Noggle and Fritz, 1983.) Reactions of Plant Glycolysis and Fermentation Respiration • Location of glycolysis: carried out by a group of soluble l bl enzymes located l t d in i the th cytosol t l and d in i plastids. • Chemically what happens to sucrose in glycolysis? – It undergoes a limited amount of oxidation. – Produces 4 molecules of pyruvate (3 (3-C C compound). – A little ATP. – Produces stored reducing power in the form of a reduced pyridine nucleotide, NADH. Functions of Glycolysis 1. Converts one hexose molecule into two molecules off pyruvic i acid, id and d partial ti l oxidation id ti off hexose h occurs. 2. Produces a limited amount of ATP. 3. Forms molecules that can be removed from the pathway to synthesize several other constituents of which the plant is made. 4. Produces two molecules of pyruvate that can be oxidized in mitochondria to yield relatively large produced in amounts of ATP, much more than is p glycolysis. Functions of Glycolysis 1. Glycolysis y y converts one hexose molecule into two molecules of pyruvic acid, and partial oxidation of hexose occurs. – No O2 is used and no CO2 is released. – Conversion C i off each h hexose h results lt in i the th reduction of two molecules of NAD+ to NADH (+2H+). – These NADH can subsequently be oxidized by O2 in the mitochondrion such that NAD+ is regenerated and two molecules of ATP are formed. Functions of Glycolysis – Some of these NADH do not enter mitochondria and d are used d in i the th cytosol t l to t drive d i various i anabolic, reductive processes. – Example: nitrate reductase reductase, an enzyme that transfers two electrons from NADH or, in a few species, from NADPH. NO O3- + NADH + H+ → NO O2- + NAD+ + H2O (Nitrate reductase) • How many steps in glycolysis result in the formation of NADH? Only one; during the oxidation of 3phosphoglyceradehyde to 1,3-bisphosphoglyceric acid, NAD+ is reduced to NADH. Functions of Glycolysis y y 2 Glycolysis produces ATP 2. ATP. • When glucose or fructose enters glycolysis, each is phosphorylated by ATP in reactions catalyzed by hexokinase or fructokinase. • Glucose-6-phosphate Glucose 6 phosphate and fructose-6-phosphate fructose 6 phosphate are the products. Functions of Glycolysis – Two ATPs are formed from each triose phosphate p p derived from the split of fructose-1,6bisphosphate, making a total of four ATPs for each glucose or fructose respired respired. • A yield of four ATPs minus the two (or one) required to form fructose-1,6-bisphosphate leaves a net yield of either two or three ATPs for each hexose used in glycolysis (if the PPiPFK route is used, then three ATPs are formed). Functions of Glycolysis • What two routes exist by which fructose-6-phosphate can be converted to fructose-1,6bisphosphate? 1. ATP – dependent – phosphofructokinase p p (ATP-PFK) ( ) 2. PPi – dependent - PFK Functions of Glycolysis Fructose-6-Pi PPi-dependent phosphofructokinase (PPi-PFK) PPi Pi ATP ATP-dependent pphosphofructokinase p f (ATP-PFK) ADP Fructose-1,6-bisphosphate , p p Functions of Glycolysis ATP-phosphofructokinase p p (ATP-PFK): ( ) current evidence suggests that the ATPPFK route is involved in so-called “maintenance respiration” by cells that are not rapidly growing differentiating, or adapting p g to changing g g environments (Black ( et al., 1987) • • Reaction occurs mainly in cells that are mature, or nearly so, and that exist for some time in a moderately constant environment. Functions of Glycolysis • Pyrophosphate phosphofructokinase (PPi-PFK): route that is much more adaptive and can increase or decrease in importance depending on developmental processes and environmental conditions conditions. Functions of Glycolysis • Conversion of glucose or fructose to fructose-1,6-bisphosphate requires: – 2 ATPs if ATP-PFK route used. – 1 ATP if PPi-PFK route used. Fermentation Fermentation • Glycolysis y y can function well without O2, but without O2 the TCA cycle and electron transport chain cannot function. • Why does this present a problem for the continued operation of glycolysis? The cell’s cell s supply of NAD+ is limited limited, and once all the NAD+ becomes tied up in the reduced state (NADH), the glyceraldehyde-3phosphate dehydrogenase reaction cannot take place. – NADH and pyruvate begin to accumulate when O2 is limiting. Fermentation • Thus, in the absence of O2, fermentation ((anaerobic respiration) allows the regeneration of NAD+ needed for glycolysis. • When O2 is Wh i lacking, l ki plants l t can further f th metabolize t b li pyruvate by carrying out one or more forms of fermentation metabolism: – Lactic acid fermentation (does occur in plants and animals): the enzyme lactate dehydrogenase uses NADH pyruvate to lactate,, thus regenerating g g NAD+. to reduce py – In alcoholic fermentation the two enzymes pyruvate decarboxylase and alcohol dehydrogenase act on pyruvate producing ethanol and CO2; oxidizes NADH. Pathways of Fermentation Leading t the to th Reoxidation R id ti off NADH Conditions Enhancing F Fermentative i Metabolism M b li • Low (hypoxic) or zero (anoxic) concentrations of ambient oxygen. • Flooded or water logged soils best example. – Diffusion of O2 to roots sufficiently reduced to cause root tissues to become hypoxic. Pentose Phosphate Pathway Reactions of the Oxidative Pentose Ph Phosphate h t Pathway P th in i Higher Hi h Plants Pl t Pentose Phosphate Pathway (PPP) • Oxidative pentose pathway • Hexose monophosphate shunt • Phosphogluconate pathway What is the major j difference between the Calvin cycle and the PPP? – Calvin C l i cycle l – sugar phosphates h h t synthesized. th i d – PPP – sugar g phosphates p p degraded. g Pentose Phosphate Pathway (PPP) • Glycolysis and PPP are greatly interwoven. • What is the one important difference between the PPP and glycolysis? – PPP electron acceptor: NADP+ – Glycolysis electron acceptor: NAD+ Main Functions of the Oxidative P Pentose Ph Phosphate h Pathway P h 1. Generates NADPH used as a reductant in biosynthetic processes when NADPH is not being generated by photosynthesis; e.g. fatty y acid and several isoprenoids. p – Particularly important in non-photosynthetic tissues,, e.g. g in differentiating g tissues,, germinating seeds and during the hours of darkness. 2 G 2. Generates ribose-5-phosphate ib h h required i d for f biosynthesis of nucleotides and nucleic acids ((RNA and DNA). ) Main Functions of the Oxidative P Pentose Ph Phosphate h Pathway P h 3. Produces erythrose-4-phosphate y p p required q for synthesis of shikimic acid, the precursor of aromatic rings. • Erythrose-4-phosphate + PEP → initial reaction that produces plant phenolic compounds in the shikimic acid pathway pathway. 4. During the early stages of greening, before leaf tissues become fully photoautotrophic, the oxidative pentose phosphate pathway is thought to be involved in generating Calvin cycle intermediates. Oxidative Pentose Phosphate Pathway: Hi h Plants Higher Pl t • NADPH is g generated in the first two reactions of the pathway. • The resulting ribulose 5-phosphate is converted to the glycolytic intermediates fructose 6 phosphate and glyceraldyhyde 3phosphate p p through g a series of metabolic interconversions. • The first two reactions are essentially i irreversible, ibl while hil the th interconversions i t i between ribulose 5-phosphate and the glycolytic g y y compounds p are freely y reversible. The Citric Acid Cycle (Tricarboxylic Acid or Krebs Cycle) A Mitochondrial Matrix Process Respiration • Where are the TCA cycle and the electron transport chain located? – Both are located within the confines of the membrane-bound organelle known as the mitochondrion. mitochondrion Reactions and Enzymes of the Pl Plant Citric Ci i A Acid id Cycle C l Conversion of Pyruvate to AcetylC Ab CoA by P Pyruvic i Dehydrogenase D h d • Acetyl-CoA y is the “fuel” of the Krebs Cycle. • The release of CO2 in the Krebs Cycle accounts for the product CO2 in the summary equation for respiration but no O2 is respiration, absorbed during any Krebs Cycle reaction. Primary Functions of the Krebs C l Cycle 1. Reduction of NAD+ and ubiquinone q to the electron donors NADH and ubiquinol, which are subsequently oxidized to yield ATP. 2. Direct synthesis (substrate-level phosphorylation) of a limited amount of ATP (one ATP for each pyruvate oxidized). oxidized) 3. Forms carbon skeletons that can be used to synthesize certain amino acids that, in turn, are converted to large molecules. Primary Functions of the Krebs C l Cycle • The flavin FAD is usually identified as the acceptor of electrons and H+ from succinic acid, with FADH2 as the product. • FAD and FADH2 are bound to succinic acid dehydrogenase, but they represent transitory intermediate compounds during the overall reduction d i off membrane-soluble b l bl quinone i (ubiquinone) to ubiquinol. Primary Functions of the Krebs C l Cycle • None of the dehydrogenase y g enzymes y of the cycle use NADP+ as an electron acceptor; NADP+ is usually nearly nondetectable in plant mitochondria. p • The release of CO2 in the Krebs cycle accounts t ffor the th product d t CO2 in i the th summary equation for respiration. • No O2 is absorbed during any Krebs-cycle reaction. Respiration • What p purpose p does the TCA cycle y serve? – Brings about the complete oxidation of pyruvate to CO2. – Generates a considerable amount of reducing power (about 16 NADH + 4 FADH2 equivalents per sucrose). – These reactions, reactions with one exception exception, involve a series of soluble enzymes located in the internal aqueous compartment, or matrix, of the mitochondrion. mitochondrion Glycolysis, The Pentose Phosphate P th Pathway and d the th Citric Cit i Acid A id Cycle C l Glyoxylate Cycle Electron Transport and ATP Synthesis at the Inner Mitochondrial Membrane Mitochondrial Electron Transport Ch i Chain Electron Transport ATP Synthesis at th Inner the I Mitochondrial Mit h d i l Membrane M b • ATP is the energy gy carrier used by y cells to drive living processes. • The chemical energy conserved during the citric acid cycle in the form of NADH and FADH2 (redox equivalents with high-energy electrons) l t ) mustt be b converted t d to t ATP to t perform useful work in the cell. • This O2-dependent process occurs in the inner mitochondrial membrane through oxidative phosphorylation phosphorylation. Electron Transport Chain Catalyzes a Flow Fl off El Electrons t ffrom NADH to t O2 • For each molecule of sucrose oxidized through glycolysis and the citric acid cycle pathways: – 4 molecules of NADH are generated in the cytosol. – 16 molecules l l off NADH plus l ((mitochondria) it h d i ) – 4 molecules of FADH2 • These reduced compounds must be reoxidized to keep the respiratory process functional. Electron Transport Chain Catalyzes a Flow Fl off El Electrons t ffrom NADH to t O2 • The electron transport chain catalyzes an electron fl flow from f NADH ((and d FADH2) to t oxygen, the th final fi l electron acceptor of the respiratory process. • The role of the electron transport chain is to bring about the oxidation of NADH (and FADH2) and, in the process, utilize some of the free energy released to generate an electrochemical proton gradient Δ ~ H+ , across the inner mitochondrial membrane. • Th The individual i di id l electron l t transport t t proteins t i are organized into four multi-protein complexes, all of which are localized in the inner mitochondiral membrane. membrane Electron Transport Chain: C Complex l I • Complex p I (NADH ( dehydrogenase) y g ) oxidizes electrons from NADH generated in the mitochondrial matrix during the TCA cycle. – Electron carriers include FMN and several ironsulfur centers. • Complex I then transfers these electrons to ubiquinone. • Four protons are pumped from the matrix to the intermembrane space for every electron pair passing through the complex. Electron Transport Chain: Ubi i Ubiquinone • Ubiquinone is a small lipid lipid-soluble soluble electron and proton carrier within the inner membrane. • The ubiquinone (UQ) pool diffuses freely within the inner membrane and serves to transfer electrons from the dehydrogenases to either complex III or the alternative oxidase. Electron Transport Chain: C Complex l II (succinate ( i t dehydrogenase) d h d ) • Oxidation of succinate in the TCA cycle is catalyzed by this complex. • The reducing equivalents are transferred via the FADH2 and a small group of iron-sulfur proteins into the q pool. p ubiquinone • Complex II does not pump protons. Electron Transport Chain: C Complex l III (cytochrome ( t h b 1 complex) bc l ) • Complex p III oxidizes reduced ubiquinone q (ubiquinol) and transfers the electrons via an iron-sulfur center, two b-type cytochromes ((b565 and b560) and a membrane-bound cytochrome c1 to cytochrome c. • F Four protons t per electron l t pair i are pumped d by complex III. • Cytochrome c is a small protein loosely attached to (peripheral protein) that transfers electrons from complex III to complex IV IV. Electron Transport Chain: C Complex l IV (cytochrome ( t h c oxidase) id ) • Complex IV contains two copper centers (CuA and C B) and Cu d cytochrome t h a and d a3. • Complex p IV is the terminal oxidase and brings g about the four-electron reduction of O2 to two molecules of H2O. • Two protons are pumped per electron pair. • Structurally and functionally functionally, ubiquinone and the cytochrome bc1 complex are very similar to plastoquinone and the cytochrome b6f complex, p y in the p photosynthetic y electron transport p respectively, chain. Unique Electron Transport E Enzymes in i Plant Pl Mitochondria Mi h d i • Two NAD(P)H dehydrogenases – Ca2+-dependent – Attach to the outer surface of the inner membrane facing intermembrane space. – Oxidize cytosolic NADH and NADPH. – Electrons from these external dehydrogenases enter the main electron transport chain at the level of the ubiquinone pool. Unique Electron Transport E Enzymes in i Plant Pl Mitochondria Mi h d i • Two p pathways y for oxidizing g matrix NADH – Electron flow through Complex I → sensitive to inhibition by several compounds, including rotenone and piericidin. – In addition, plant mitochondira have a rotenoneresistant dehydrogenase for oxidation of NADH derived from citric acid cycle substrate → this pathway may be a bypass that is engaged when complex I is overloaded, such as under photorespiratory conditions conditions. Unique Electron Transport E Enzymes in i Plant Pl Mitochondria Mi h d i • An NADPH dehydrogenase y g is p present on the matrix surface; little is known about this enzyme. • Most, if not all, plants have an “alternate” respiratory pathway for reduction of oxygen oxygen. – This pathway involves the so-called so called alternative oxidase; unlike cytochrome c oxidase, it is insensitive to inhibition by cyanide, azide, or carbon monoxide. Transporters Exchange S b Substrates and d Products P d • Although ATP is synthesized in the mitochondrial matrix, most of it is used outside the mitochondrion. – An efficient mechanism for moving ATP in and out of the organelle is needed. needed • Adenylate transport involves the ADP/ATP (adenine ( d i nucleotide) l tid ) transporter, another inner-membrane transporter. p Transmembrane Transport in Pl Plant Mitochondria Mi h d i Electron Transport Chain Chemiosmotic Theory • As electron pairs pass down the ETC, H+ ions are pumped across the inner mitochondrial membrane from the matrix to the intermembrane space. • The electrochemical gradient of H+ ions across the inner membrane constitutes the driving g force for the ATP-ase ((ATP synthase) catalyzed phosphorylation of ADP. Chemiosmotic Theory • This ‘driving driving force’ force has been termed ‘proton motive force’ and is composed of two elements: – pH difference or gradient across the inner membrane of about 1.5 1 5 pH units (7.0 (7 0 in intermembrane space and 8.5 in matrix). – A An electrical l t i l potential t ti l difference diff or gradient of about 0.15 V (H+ ions on outer surface of inner membrane and OH- on the inner surface of the membrane). Chemiosmotic Theory Five Complexes of Integral Membrane Proteins in Inner Mitochondrial Membrane Complex • *I • II • *III • *IV • V Name NADH dehydrogenase Succinate dehydrogenase Cytochrome c reductase (complex cytochrome bc1) Cytochrome c oxidase ATP synthase * Sit Sites att which hi h protons t are pumped d Electron Pathways in Plants ATP / Pi Transporter in Mitochondria • The one-for-one exchange of mitochondrial ATP and cytosolic ADP across the inner membrane is driven by the membrane potential potential. • Pi is returned to the matrix in exchange for OH-. Alternate Electron Pathways in Plants Alternate Electron Pathways in Plants CYANIDE-RESISTANT RESPIRATION • The way the plant controls the flow of electrons through the two electron transport chains is not clear but there is evidence to indicate that the intensity of the electron flux through the cytochrome system of the conventional chain is a regulating factor. – It Its activity ti it is i highest hi h t in i cells ll rich i h in i sugars (as ( after rapid photosynthesis) when glycolysis and the Krebs cycle occur unusually rapidly, because then the normal electron-transport pathway cannot handle all the electrons provided to it. CYANIDE-RESISTANT CYANIDE RESISTANT RESPIRATION – Several experts have concluded that the alternative pathway operates largely as an overflow mechanism to remove electrons l t when h the th cytochrome t h pathway becomes saturated by rapid glycolysis and Krebs-cycle activities activities. CYANIDE-RESISTANT RESPIRATION • Physiological y g significance? g • The physiological significance of cyanideresistant respiration is not clear. – Goodwin and Mercer (1981) indicate that it is doubtful that its function is to allow plants to survive in the presence of cyanide even though many plants release HCN from cyanogenic i glucosides l id when h they th are injured. i j d Why? Because those plant tissues with the y respiration p have most active cyanide-resistant no cyanogenic glucosides. CYANIDE-RESISTANT RESPIRATION –C Cyanide-resistant id i t t respiration i ti is i thought th ht to t be b responsible for the climacteric in fruits (i.e., the marked increase in respiration p during g and just prior to ripening). The climacteric is induced by ethylene and it is thought that ethylene brings this about by stimulating cyanide-resistant respiration. – Certain germinating seeds exhibit cyanideresistant respiration during the early stages of water imbibition. imbibition CYANIDE-RESISTANT RESPIRATION – The best understood role of cyanide-resistant respiration is, however, in generating heat in thermogenic tissues: • Thermogenicity is seen in the flowers of inflorescences of certain p plants such as water lily, Victoria, and the arum lilies, Arum maculatum. • In skunk cabbage (Symplocarpus foetidus), foetidus) the inflorescence is a spadix covered with tiny hermaphroditic flowers which produce heat and a foul ou smell. s e The e heat eat is sp produced oduced in tthese ese inflorescences to volatize the odiferous compounds formed in them. The latter are frequently amines or indoles and serve to attract pollinating lli ti insects. i t CYANIDE-RESISTANT RESPIRATION • Energy production of cyanide-insensitive respiration? – Since the P/O ratio of cyanide-resistant respiration is 1 in contrast to 3 for conventional respiration, the cells have to oxidize three times as much fuel to get the required amount of ATP. – Assuming that oxidation is via NADH, this will produce about 4.5 times as much heat (i.e., energy that is not conserved as ATP) than normal. Arum italicum Skunk cabbage Air temperature 15 C 5C Inflorescence 51 C 30 C CYANIDE-RESISTANT RESPIRATION Does Respiration Reduce Crop Yields? • Plant respiration can consume an appreciable amount of carbon fixed each day during photosynthesis over and above losses due to photorespiration • To what extent can changes in a plant plant’s s respiratory metabolism affect crop yields? Does Respiration Reduce Crop Yields? • Two components of respiration: – Growth respiration - involves the processing of reduced carbon to bring g about the growth g of new plant matter – Maintenance respiration - component of respiration needed to keep existing, mature cells in a viable state • Utilization of energy by maintenance respiration is not well understood • Estimates indicate that it can represent more than 50% of the total respiratory flux Whole-Plant Respiration • Many factors affect the respiration rates of a plant – Species – Growth habit of the plant – Type and age of specific organ – Environmental variables • External oxygen concentration • Temperature • Plant water status Whole-Plant Respiration • Even though plants generally have low respiration rates, the contribution of respiration to the overall carbon economy of the plant can be substantial – Several herbaceous species surveyed indicated that 30-60% of the daily gain in photosynthetic p y carbon was lost to dark respiration • These values tended to decrease with age g • Young trees lose roughly a third of their daily photosynthate to respiration Whole-Plant Respiration • Loss can double in older trees as the ratio of photosynthetic to nonphotosynthetic tissue decreases. • In tropical p areas,, 70-80% of the daily y photosynthetic gain can be lost to respiration owing to the high nighttime respiration i i rates associated i d with ih elevated night temperatures. Whole-Plant Respiration • Empirical relations between plant respiration rates and crop yield – Yield increases of 10-20% were correlated with a 20% decrease in the leaf respiration p rate of the forage crop perennial ryegrass (Lolium perenne) (Wilson and Jones, 1982) – Similar correlations have been found for other plants, including corn and tall fescue (Lambers, 1985) • Appears that a potential for increasing crop yields through reduction of respiration rates exists Whole-Plant Respiration • What about the cyanide-resistant alternative pathway? – Cyanide-resistant pathway has the potential t ti l for f utilizing tili i considerable id bl amounts of the cell’s reduced carbon to no apparent useful end – Estimates of the alternative pathway in wheat roots alone suggest a loss of carbon equivalent to 6% of the final grain yield