Survey
* Your assessment is very important for improving the workof artificial intelligence, which forms the content of this project
Download included data sources
Document related concepts
Magnesium transporter wikipedia , lookup
Western blot wikipedia , lookup
Genome evolution wikipedia , lookup
Protein adsorption wikipedia , lookup
Protein moonlighting wikipedia , lookup
Gene expression wikipedia , lookup
Gene expression profiling wikipedia , lookup
Silencer (genetics) wikipedia , lookup
List of types of proteins wikipedia , lookup
Endogenous retrovirus wikipedia , lookup
Molecular evolution wikipedia , lookup
Gene nomenclature wikipedia , lookup
Nuclear magnetic resonance spectroscopy of proteins wikipedia , lookup
Clinical neurochemistry wikipedia , lookup
Gene regulatory network wikipedia , lookup
Two-hybrid screening wikipedia , lookup
Expression vector wikipedia , lookup
Biochemical cascade wikipedia , lookup
Transcript
DATASOURCES JANUARY2017 TOTALNUMBEROFINTEGRATEDDATASOURCES:176 TheEuretosKnowledgePlatformisaninnovativebioinformaticsplatformusedby someoftheworld’slargestpharma&biotechcompanies,academichospitalsand researchinstitutes.Ouruniqueconfigurabledataloadingplatformenablesusto updateandextendthecontentoftheplatformefficiently.Asaresult,theEuretos KnowledgePlatformisthefastestgrowinginterconnectedknowledgebase. IntheJanuary2017release,theplatformintegratesandinterconnectsdatafrom176sources.These sourcescanbedividedintwodifferenttypes: • LifeSciencesSources–Thesearesourcesthatlifescientistsdirectlyconsultsomeofwhichare widelyknownsuchasPubmed,Uniprot,Chemblandmanyotherbiologicalsources. SemanticandOntologicalSources–Thesearesourceslikeontologies,structuredvocabulariesand thesaurithatareoftennotconsulteddirectlybylifescientistsbutplayacrucialroleinclassifying lifesciencesdataandrecognizingindividualconcepts. • Belowisaselectionfromthesesources.Acompletelistofallsemantic,ontologicalandlifesciences sourcesisavailabletoourcustomersonrequestwhereweprovidefulldisclosure. Source Source APB AustralianPhenomeBank Aracyc PathwaysinArabidopsisThaliana ARC AnimalResourcesCentre BaselineExpressionAtlas RNAexpressioninhealthytissue BIND Molecularinteractions BindingDB Biochemicalinteractiondataforsmallmoleculesandprotein targets Biogrid Protein-proteininteractionsandprotein-smallmolecule interactions Biomodels Computationalmodelsofbiologicalprocesses BioPlex Proteininteractionnetworks CARD CentreforAnimalResourcesandDevelopment CellLine Curatedcelllineoverview Chebi Vocabularyforchemicalentitiesofbiologicalinterest ChEMBL Compounds,targetsandbiochemicalassays www.euretos.com Betteranswerstoresearchquestions.Faster 1 DATASOURCES JANUARY2017 ClinicalMeasurementOntology ClinicalTrials Clinicaltrials Clinvar Clinicalgenomicvariation CMMR CanadianMouseMutantRepository ComparativeToxicogenomics Database Gene-phenotype-chemicalinteractions ConceptWiki Vocabulary CORUM Proteincomplexes CROP Geneticannotationsanddiversityoftraitsandenvironmental treatmentsforplants DECIPHER Clinicalphenotypic-genotypicdata DifferentialExpressionAtlas Geneexpressionpatternsindifferentbiologicalconditions DIP Proteininteractions DisGeNet Gene-diseaseassociations Drugbank Chemical,pharmacologicalandpharmaceuticalinformationfor approvedandexperimentaldrugsandproteintherapies EMMA EuropeanMouseMutantArchive EnsemblPlantVariation (Gramene) Geneticvariationandphenotypeassociationforplants Enzyme Enzymecharacterisation ExperimentalFactorontology Ontologyforvariablesinbiologicalexperiments Fantom5 CAGEexpressiondatainhealthytissue Foodb Databaseforfoodandingredients GeneOntology Molecularfunctions,biologicalprocessesandcellularcomponents GTEx RNA-seqExpressiondatainhealthytissue GWAS CuratedresourceofSNP-traitassociations HGNC Nomenclatureforhumangenes www.euretos.com Betteranswerstoresearchquestions.Faster 2 DATASOURCES JANUARY2017 HPRD Proteininteractionsandpathways HumanMetabolomedatabase Smallmoleculemetabolites HumanPhenotypeOntology Phenotypicabnormalitiesencounteredinhumandisease HumanPhenotypeOntology- Pubmed DataminingresultsforPhenotype-Diseaseassociations HumanProteinAtlas RNAseqandproteinabundancemeasurementinhealthytissues andcancertissues;Geneclassifications HumanProteinMap Proteinabundancemeasurementsinhealthytissues Humancyc Molecularpathways ICD10 Diseaseclassification INOH Manuallycuratedpathwaydatabase Intact Molecularinteractions IntActComplex Proteincomplexes InternationalMouseStrain Resource(IMSR) Mousemodelresources JAX Straindatabase KOMP KnockoutMouseProject MeSH Vocabulary miRTarBase MicroRNAtargetinteractions MMRRC MutantMouseRegionalResourceCenter Monarch Gene-phenotypeassociationsfrommodelorganisms MonarchCrossSpecies PhenotypeOntology Ontology MouseGenomeInformatics MGIistheinternationaldatabaseresourceforthelaboratory mouse,providingintegratedgenetic,genomic,andbiologicaldata tofacilitatethestudyofhumanhealthanddisease. MousePhenotypeOntology Ontology MRCHarwell HarwellScienceandInnovationCampus www.euretos.com Betteranswerstoresearchquestions.Faster 3 DATASOURCES JANUARY2017 MUGEN MugenMouseDatabase NationalCancerInstitute Vocabularyforcancers,agentsandrelatedsubstances NCBIgeneannotation Geneinformationandannotation NCBIgeneorthologues Geneorthologues NCBIgenesequence Referencesequences NCIPID Molecularpathways NCIMR NationalCancerInstituteatFrederick Netpath Manuallycuratedpathwaydatabase NIG NationalInstituteofGenetics(Japan) OMIM Geneticphenotypes Orphanet Rarediseasesandorphandrugs Panther Proteinclassifications Pathwayontology Classicmetabolic,regulatory,signaling,druganddiseasepathways PhosphositePlus Proteinpost-translationalmodifications Phytozome Geneorthologsinplants Plantenvironmentontology Vocabularyofplantenvironmentalconditionsandexperimental treatments Plantontology Plantanatomy,morphologyandstagesofdevelopmentforall plants Pubmed Scientificliterature;abstracts RBRC RikenBioResourceCenter Reactome Molecularpathways ReconX Humanmetabolism RxNorm Drugsvocabulary SemanticMedline TextminingresultsofPubmedabstracts www.euretos.com Betteranswerstoresearchquestions.Faster 4 DATASOURCES JANUARY2017 SGD GeneticannotationsforSaccharomycescerevisiae SMPDB Smallmoleculepathwaydatabase SNOMEDCT Clinicalhealthvocabulary String Proteininteractions TAC TaconicBiosciences TAIR GeneticandmolecularbiologyformodelorganismArabidopsis Thaliana TheCancerGenomeAtlas(TCGA) RNA-seqExpressiondataincancerpatients TIGM TexasA&MInstituteofGenomeMedicine Traitontology Vocabularyofplanttraits TransfacPublic Generegulation Uberon Crossspeciesanatomyontology UMLS Biomedicalvocabulary Uniprot Proteomics Vertebratetraitontology Wikipathways Manuallycuratedpathwaydatabase www.euretos.com Betteranswerstoresearchquestions.Faster 5
