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Lab 11 Protein Synthesis Flashcards 1) What is the primary structure of a protein? 2) What is the main factor that determines how one protein differs from another? 3) What is the secondary structure of a protein? 4) What is the tertiary structure of a protein? 5) How does a string of amino acids fold into a 3 dimensional shape? 6) What is the importance of the 3-D shape of a protein? 7) What is DNA? 8) Alterations of the DNA sequence which ultimately affect the outcome of the protein are called? 9) Advantageous mutations may lead to what? The sequence of amino acids in the protein molecule. Its primary structure When the string of amino acids folds into a staircase shape, called a beta pleat. Not all amino acid strings do this, so not all proteins have a secondary structure. Its 3-dimensional shape Some amino acids have a negative charge that bind onto an amino acid in the string that has a positive charge, causing a 3-dimensional fold in the string. It is essential to a protein’s physiological function. If it does not fold properly, it will not be in the proper shape to perform its function. Sequences of nucleic acids on our chromosomes that contain information on how to build the thousands of different proteins in our body. Mutations. 10) Disastrous mutations most often lead to what? improved or new proteins that enhance survival of an organism the death of organisms 11) What are the raw materials for natural selection? mutations 12) Where is DNA kept? In the nucleus of each cell. 13) What is the process called when a copy of our DNA is made by mRNA (messenger RNA)? 14) To what location in the cell does the mRNA carry the DNA copy? 15) What happens in the ribosome when the mRNA gets there? 16) What is a codon? Transcription. 17) When the mRNA enters the ribosome and the ribosome reads each codon and strings amino acids together to form a protein, what is this process called? 18) What molecules carry the amino acid to the ribosome so they can be attached into a string? 19) What is an anticodon? Ribosomes. Protein synthesis occurs; the protein is made. A series of three nucleic acid sequences on the mRNA that codes for one amino acid on the protein that needs to be made. Translation. tRNA molecules (transfer RNA). The end of the tRNA molecule that matches the three nucleotide sequence (the codon) of the mRNA so that it fits like a key in a lock. Flashcards 20) Suppose the 5th base pair (from the left) of the original DNA is changed from "T" to "A". What effect does this have on your product? 21) Suppose the original DNA is changed so that the 11th base pair (from the left) is no longer "G" but becomes "C". a. How does this affect the mRNA sequence? b. How does this affect the "protein" produced? 22) For practice, write a sequence of nucleic acids (such as ATGGCTCAT) and then write what its complementary strand will look like. 23) Translate your mRNA from the above sequence 24) Write the codons for the above sequence 25) In nature, what is the ultimate judge of “better” or “worse” protein? 26) What are the consequences of “better” or “worse” to individuals and the population? 27) What would happen to the protein if one nucleotide was deleted from the original DNA? 28) How would the mRNA be affected? 29) What would happen to the protein if one nucleotide was added to the original DNA? 30) How would the mRNA be affected? The codons would be different, so the amino acid sequence would be different, so the protein would be different. The codons would be different, so the amino acid sequence would be different, so the protein would be different. UACCGAGUA (remember, there are no “T”’s in mRNA, so we use a “U” instead). This is the transcribed segment, or the mRNA ATGGCTCAT This is the translated RNA ATG codes for the first amino acid GCT codes for the second amino acid CAT codes for the third amino acid The codons would be different, so the amino acid sequence would be different, so the protein would be different. The codons would be different, so the amino acid sequence would be different, so the protein would be different.