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Honors Biology Name:____________________ Date:________ Period:______ Transformation Introduction: Transformation is the process by which a bacterium’s DNA is altered to include foreign genes from a different species. Such transgenic bacteria are used in medical manufacturing facilities around the world. Local facilities such as Life Technologies in Carlsbad have huge transgenic bacterial farms that produce various human hormones and enzymes used to treat various ailments such as diabetes. Before the development of transgenic bacteria, patients that needed insulin were given horse, cow, or pig insulin. The foreign protein was not as efficient and was incredibly expensive to obtain. Now human insulin is produced in massive volumes at low cost by genetically engineered bacteria. In this lab you will simulate the techniques used by genetic engineers to create recombinant DNA that codes for the production of human insulin. Materials: Graph paper, color pencils (red, blue, green and yellow), scissors, transport tape. Procedure: 1. Copy the DNA sequences onto graph paper, putting one letter from the DNA sequence into each square: A-A-G-C-T-T-A-T-G-G-T-C-C-C-G-G-A-C-G-A-A-G-C-T-T-C 2. In the squares below the single strand of DNA, write in the complementary DNA sequence. 3. Color the square for each base utilizing the following color code: Adenine (A) = red; Thymine (T) = blue; Cytosine (C) = yellow; Guanine (G) = green 4. What parts of the DNA molecules are not represented on this graph paper model? ________________________ ___________________________________________________________________________________________ 5. Using scissors cut out the double stranded DNA model. Save the unused portion of your graph paper for step 8). 6. The model you have just created represents the insulin gene. Notice that your model contains 20 DNA base pairs. The actual gene contains 1430 DNA base pairs. 7. Now that the insulin gene has been identified and isolated, what do you think is the next step in creating recombinant DNA?____________________________________________________________________________ ___________________________________________________________________________________________ ___________________________________________________________________________________________ 8. Using the unused portion of your graph paper, copy the following DNA sequence: G-G-A-T-C-C-T-G-A-C-A-C-C-G-G-C-G-C-G-T-C-A-A-G-C-T-T-C-C-C 9. In the squares below the single strand of DNA, write in the complementary DNA sequence. 10. Color the squares for each base using the previous color code. 11. Cut out your double stranded DNA. Label the back then tape both ends together to create a circle. 12. You now have a plasmid. Recall that plasmids are small rings of DNA found in bacteria. 13. To insert the insulin gene into the plasmid, you must create what genetic engineers call “Sticky ends.” Sticky ends are unpaired bases at ends of DNA molecules that have been cut apart. Genetic engineers use special enzymes called restriction enzymes to cut apart DNA molecules. There are a variety of restriction enzymes such as EcoRI and HindIII. You will use HindIII, which cuts DNA strands between adjacent A’s in the base sequence shown below: 14. On your plasmid, find the base sequence shown above. Using your scissors separate the double-stranded DNA ring just as HindIII would. Which bases make up your sticky ends? ______________________________________ 15. Find the base sequence above on your insulin gene. You should find two such sequences – one at each end of the molecules. Cut apart the two DNA strands just as HindIII would. Set aside the leftover bases. What bases make up the sticky ends on your insulin gene after treatment with HindIII? ______________________________ 16. Compare the sticky ends of the plasmid with those of the insulin molecule. What observations can you make? ___________________________________________________________________________________________ 17. Move the insulin gene to the open ends of the plasmid. Fit the insulin gene into the ring so the complimentary bases line up. When you are sure the base pairing is correct, tape the ends to create one new, closed ring. The enzymes that connect the pieces of DNA are called ligases. Scissors are used to simulate restriction enzymes. What does the tape simulate? ___________________________________________________________________ 18. What is the new plasmid (plasmid + insulin) called? _________________________________________________ 19. The next step in genetic engineering would be to insert the altered plasmid into a bacterium. 20. What happens when the bacterium containing the recombinant DNA reproduces? ________________________ ___________________________________________________________________________________________ 21. Once inside the bacterium, the altered plasmid directs production of human insulin. Because bacterium has no need for the hormone, it is excreted from the cell. The bacteria reproduce freely in test tubes and/or tanks and scientists harvest the hormone and use it to treat children patients with diabetes. Conclusion: 1. How did you know that your insertion of the insulin gene into the plasmid was correct? 2. The restriction enzyme HpaII cuts DNA between adjacent C’s in the following base sequence: What sticky ends would result if you used this enzyme to cut DNA? 3. Could you have used HpaII to create a recombinant DNA molecule? Explain. 4. The restriction enzyme BamHI cuts DNA between adjacent G’s in the following base sequence: What sticky ends would result if you used this enzyme to cut DNA? 5. Could you have used BamHI to create a recombinant DNA molecule? Explain.