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doi:10.1093/jmcb/mjv030 Published online May 19, 2015 Journal of Molecular Cell Biology (2015), 7(5), 455 – 465 | 455 Article Ectodermal progenitors derived from epiblast stem cells by inhibition of Nodal signaling Lingyu Li1,4,† , Lu Song1,†, Chang Liu1, Jun Chen1, Guangdun Peng1, Ran Wang1, Pingyu Liu1, Ke Tang2, Janet Rossant3, and Naihe Jing1, * 1 State Key Laboratory of Cell Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China 2 Institute of Life Science, Nanchang University, Nanchang 330031, Jiangxi, China 3 Program in Developmental and Stem Cell Biology, Hospital for Sick Children Research Institute, Toronto, ON M5G 1X8, Canada 4 Present address: Department of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA † These authors contributed equally to this work. * Correspondence to: Naihe Jing, E-mail: [email protected] The ectoderm has the capability to generate epidermis and neuroectoderm and plays imperative roles during the early embryonic development. Our recent study uncovered a region with ectodermal progenitor potential in mouse embryo at embryonic day 7.0 and revealed that Nodal inhibition is essential for its formation. Here, we demonstrate that through brief inhibition of Nodal signaling in vitro, mouse embryonic stem cell (ESC)-derived epiblast stem cells (ESD-EpiSCs) could be committed to transient ectodermal progenitor populations, which possess the ability to give rise to neural or epidermal ectoderm in the absence or presence of BMP4, respectively. Mechanistic studies reveal that BMP4 recruits distinct transcriptional targets in ESD-EpiSCs and ectoderm-like cells. Furthermore, FGF– Erk signaling may also be alleviated during the generation of ectoderm-like cells. Thus, our data suggest that instructive interactions among several extracellular signals participate in the commitment of ectoderm from ESD-EpiSCs, which shed new light on the understanding of the formation of ectoderm during the gastrulation in early mouse embryo development. Keywords: EpiSCs, ectoderm, BMP4, Nodal, FGF Introduction Three germ layers, ectoderm, mesoderm, and endoderm, are generated in the early mouse embryo during gastrulation. As gastrulation initiates, the pluripotent epiblast cells migrate through the primitive streak to form mesendoderm, which later gives rise to mesoderm and definitive endoderm. The layer of cells that do not ingress into the primitive streak is referred as ectoderm (Tam and Behringer, 1997). By the end of gastrulation, the ectoderm was restricted to the epidermal and the neural lineages (Carey et al., 1995). Fate map studies in mouse embryo have revealed that the anterior/proximal part of the ectodermal layer at embryonic day 7.5 (E7.5) is usually differentiated into epidermal lineage, while other parts of the anterior ectodermal layer give rise to progenitors of the central nervous system (Tam, 1989; Tam and Quinlan, 1996). Single cell lineage tracing experiment demonstrates that neural ectoderm and surface ectoderm progenitors are localized in the anterior midline ectoderm at the late gastrulation stage (Cajal et al., 2012). However, whether ectoderm progenitor populations exist Received October 31, 2014. Revised January 22, 2015. Accepted January 27, 2015. # The Author (2015). Published by Oxford University Press on behalf of Journal of Molecular Cell Biology, IBCB, SIBS, CAS. All rights reserved. in mouse embryos has not been fully elucidated. We recently showed that an anterior/proximal region of the ectodermal layer in E7.0 mouse embryo contains transient bi-potential ectodermal progenitor populations, which can be efficiently differentiated into either epidermis or neural tissue depending on BMP signaling (Li et al., 2013). Several studies show that there may be intermediate ectodermal progenitor cells, such as neuro-ectodermal progenitors or epidermal progenitors, existing during the differentiation of the pluripotent stem cells (Kawasaki et al., 2000; Aberdam et al., 2007b; Harvey et al., 2010). During mouse embryonic stem cell (ESC) neural differentiation, when ESCs were treated with BMP4 and co-cultured with PA6 stromal cells, the expression of the epidermal marker E-cadherin but not mesodermal markers is significantly increased (Kawasaki et al., 2000). When cultured on fixed feeders in serum-free condition, mouse ESCs could be specified to either neural or epidermal fate depending on the absence or presence of BMP4, respectively (Aberdam et al., 2007b). Furthermore, a transient ectoderm population is identified during the neural fate commitment of ESC in HepG2 cell-conditioned medium (Harvey et al., 2010). However, the mechanism involved in ectodermal progenitor formation during the process of pluripotent stem cell differentiation is not clear. 456 | Li et al. Epiblast stem cells (EpiSCs) are pluripotent stem cells, which are derived from the epiblast of postimplantation mouse embryos from E5.5 to E7.5 (Brons et al., 2007; Tesar et al., 2007; Kojima et al., 2014). Recently, EpiSC cell lines are established from mouse ESCs and named ESC-derived epiblast stem cells (ESD-EpiSCs), which share similar characteristics as EpiSCs (Zhang et al., 2010). In EpiSCs, Activin/Nodal and bFGF signaling pathways are required to maintain the undifferentiated state (Greber et al., 2010). Upon EpiSCs differentiation, Activin/Nodal signaling is necessary to induce mesendoderm differentiation (Vallier et al., 2009a). Inhibition of Activin/Nodal signaling by SB431542 (Inman et al., 2002; Laping et al., 2002) impairs mesendoderm lineage commitment and promotes neural induction (Patani et al., 2009; Vallier et al., 2009b; Chng et al., 2010). So far, little is known about whether and how ectodermal progenitor populations could be derived from EpiSCs. In this study, we conducted differentiation in chemically defined medium (CDM), and observed that ESD-EpiSCs treated with a Nodal inhibitor for a short period could be committed to ectodermal progenitors, which have the potential to generate either neural or epidermal cells. In addition, BMP4 plays distinct roles in EpiSCs and ectodermal progenitors. The inhibition of FGF signaling also promotes ectodermal differentiation of ESD-EpiSCs, and both Nodal and FGF signaling pathways participate in the commitment from ESD-EpiSCs to ectodermal progenitors. Results Nodal inhibition promotes the specification from ESD-EpiSCs to ectoderm lineage In order to investigate the developmental potential of ESDEpiSCs by Nodal inhibition, ESD-EpiSCs were differentiated under four conditions, CDM only (Control), CDM with BMP4 (BMP4), CDM with SB431542 (SB43), and CDM with BMP4 plus SB43 (BMP4/ SB43), for 3 days. Intriguingly, cells cultured under different conditions showed distinct morphologies (Figure 1A). A homogenous cell population with stratified epidermis-like morphology was observed in BMP4/SB43 treatment (Figure 1Ad). In addition, realtime quantitative PCR (Q-PCR) showed that the expression of pluripotent markers Oct4 and Fgf5 was sharply reduced in CDM medium with SB43 (Figure 1Ba). In the absence of Nodal inhibition, BMP4 mainly induced the expression of mesendodermal markers, such as T, Flk1, Gata4, Gata6, and Sox17 (Figure 1Bb). In the absence of BMP4, SB43 promoted the expression of neural markers Sox1, Sox2, Pax6, and MAP2 (Figure 1Bc). The combination of BMP4 and SB43 treatment resulted in high expression of epidermal markers K8, K18, K5, K14, and K15 (Figure 1Bd) (Moll et al., 1982; Kirfel et al., 2003; Aberdam et al., 2007a; Troy et al., 2011). Consistent with the Q-PCR results, immunostaining assay revealed similar expression profiles of lineage markers assessed in differentiated ESD-EpiSCs (Figure 1C and D). Compared with the control, the expression of MAP2 was higher in SB43-treated cells, indicating that the neural differentiation was enhanced (Figure 1Cg and D). In the presence of BMP4, 40% of cells were positive for T, a mesendoderm marker (Figure 1Cb and D), and only 10% were positive for K18, an epidermal marker (Figure 1Cj and D). Interestingly, 82% of ESD-EpiSCs treated with both SB43 and BMP4 for 3 days were positive for K18 (Figure 1Cl and D). Taken together, these data suggest that Nodal inhibition probably cooperates with BMP signals to modulate the lineage commitment from ESD-EpiSCs to either neural or epidermal fate, and repression of Nodal signaling by SB43 in ESD-EpiSCs might induce an ectodermal progenitor, which could give rise to either epidermal or neural cells. To further confirm the existence of an ectodermal progenitor stage during ESD-EpiSC differentiation, we characterized the lineage progression of ESD-EpiSCs differentiation for 3 days under four conditions (Control, BMP4, SB43, BMP4/SB43). Q-PCR analyses revealed that after 24 h of culture, the cell population exhibited features reminiscent of the ectodermal progenitor populations (Supplementary Figure S1). On Day 1 (D1), in SB43-treated cells (SB43 or BMP4/ SB43), the expression of the pluripotent marker Oct4 was decreased, and the expression of epiblast markers Fgf5 and Nodal was also sharply reduced to the basal level (Supplementary Figure S1A). However, neural markers Sox1, Pax6, and MAP2, as well as epidermal markers K8, K18, and DNp63 (Aberdam et al., 2007b), could not be detected in these cells on D1. But after D1, the expression of neural and epidermal markers was increased gradually (Supplementary Figure S1B and C). SB43 treatment also suppressed the expression of mesendoderm markers T, Mixl1, and Gata4 to the ground level on D1 (Supplementary Figure S1D). These results suggest that cells treated with Nodal inhibition for 24 h have progressed through the pluripotent state to a transient intermediate ectodermal progenitor status, but not been committed to either neural or epidermal fate. Derivation of the ectoderm lineage by brief inhibition of Nodal signaling To investigate the temporal-window of the Nodal inhibition to derive the transient ectodermal progenitor populations, ESDEpiSCs were cultured in CDM with SB43 for 12 h, 18 h, 24 h, and 30 h, respectively (Figure 2A). After the removal of SB43, cells were grown in CDM without or with BMP4 till Day 3. Then, total RNAs were collected and analyzed by Q-PCR assays. The result showed that in the absence of BMP4, the expression of neural markers Sox1, Pax6, and MAP2 is dramatically increased in ESD-EpiSCs treated with SB43 for 18 h or 24 h (Figure 2B). In contrast, in the presence of BMP4, the expression of epidermal markers K8, K18, DNp63, K5, and K14 (Figure 2C), but not mesendodermal markers Flk1, Sox17, Gata6, Cdx2, Hand1, and Eomes (Figure 2D), was induced in ESD-EpiSCs treated with SB43 for 18 h or 24 h. When cells were treated first with SB43 for a shorter period (12 h) and with BMP4 thereafter, high expression levels of mesendoderm markers were observed (Figure 2D), suggesting that the mesendoderm differentiation potential was still reserved in these cells. Meanwhile, prolonged inhibition of Nodal signaling (30 h) prior to the BMP induction failed to induce the expression of epidermal markers to the similar levels as cells cultured with both BMP4 and SB43 (Figure 2C), suggesting that probably cells treated by SB43 for 30 h have differentiated beyond the ectodermal progenitor stage. These data demonstrate that an intermediate ectodermal progenitor population is induced by SB43 treatment for 18 h or 24 h. Ectodermal progenitors derived from epiblast stem cells | 457 Figure 1 Nodal inhibition promotes neural and epidermal differentiation in ESD-EpiSCs. (A) The morphology of cells differentiated in four kinds of medium: CDM without any other factor (Control), CDM with BMP4 (BMP4), CDM with SB43 (SB43), and CDM with BMP4 and SB43 (BMP4/SB43). BMP4 concentration: 10 ng/ml; SB43 concentration: 10 mM. Scale bar, 200 mm. (B) Q-PCR analysis of marker gene expression in cells differentiated under the four medium conditions. (C) Immunostaining for T, MAP2, and K18 in cells differentiated under the four medium conditions. Scale bar, 200 mm. (D) Percentage of T+, MAP2+, and K18+ cells after differentiation under the four medium conditions. 458 | Li et al. Figure 2 ESD-EpiSCs treated with SB43 for 18 h are in a transient stage similar to the ectodermal progenitor stage. (A) Schematic of the timewindow experiment. Red line indicates the addition of SB43 (10 mM). Blue line indicates the addition of BMP4 (10 ng/ml). Dotted black line indicates control medium without any factor or inhibitor. (B) The expression of neural markers in each group of cells. (C) The expression of epidermal marker genes in each group of cells. (D) The expression of mesendodermal markers in each group. The red rectangle is used to highlight Q-PCR data in the 18– 24 h window. (E) Western blot analysis of p-Smad2 and Smad2 in ESD-EpiSCs treated with SB43 (SB) for 3 h, 6 h, 12 h, and 18 h. Nodal signal is transducted by extracellular ligand binding to the receptor, then recruits and phosphorylates cytoplasmic effectors Smad2/3 (Schier, 2003). In order to investigate whether SB43 treatment interfered Nodal signaling cascade, western blot was conducted to assess the expression of phosphorylated Smad2 (p-Smad2) during the ESD-EpiSC differentiation. Compared with the control, the expression of p-Smad2 was reduced gradually with SB43 treatment at 3 h, 6 h, and 12 h, and was almost undetectable at 18 h (Figure 2E). Interestingly, the lowest Nodal activity indicated by undetectable p-Smad2 level and the induction of the transient ectodermal progenitor occurred co-incidentally around 18 h after SB43 treatment, suggesting that cells treated with SB43 for 18 h or 24 h are bi-potency to differentiate to either neural or epidermal fate. To validate that the ectoderm specification by Nodal inhibition was not SB43 specific, A-83-01, another ALK4/5/7 receptors inhibitor, was used to substitute SB43 (Tojo et al., 2005). Consistent with the observations in SB43-treated cells, the Ectodermal progenitors derived from epiblast stem cells expression of the neural marker MAP2 or the epidermal marker K18 was clearly detected in A-83-01-treated cells without or with BMP4, respectively (Supplementary Figure S2A). Interestingly, it is the cells treated with A-83-01 for 15 h or 18 h that display the dual potency for neural or epidermal fate (Supplementary Figure S2B). In addition, an epiblast stem cell line generated from early mouse embryo could also generate the intermediate ectodermal progenitor after SB43 treatment (data not shown). Thus, an ectodermal progenitor population, named ectoderm-like cells (EctlCs), could be derived from EpiSCs by transient inhibition of Nodal signaling. BMP4 activates divergent transcriptional networks in EpiSCs and EctlCs Given that EctlCs were different from EpiSCs, their properties were characterized by whole genome microarrays. The RNA samples were collected from ESD-EpiSCs, EctlCs, and neuronal and epidermal cells differentiated from EctlCs, and were analyzed on Agilent Whole Mouse Genome Oligo 4X44K Microarrays. The global transcriptome of EctlCs was different from ESD-EpiSCs (Figure 3A), which indicates that EctlCs have already exited from the pluripotent epiblast state. Meanwhile, hierarchical clustering analysis also showed the low similarity in gene expression profiles between EctlCs and differentiated ectodermal cells, including NPCs (neural progenitor cells) and epidermis (Figure 3A). Based on microarray data, we chose a few genes that are specifically and highly expressed in EctlCs, and verified their expression pattern by Q-PCR. Both microarray results and Q-PCR data revealed that the expression of Eras, Sez6, Stmn3, and Stmn4 genes was high in EctlCs, compared with ESCs, EpiSCs, ESD-EpiSCs, NPCs, and epidermis (Figure 3Ba). Furthermore, we isolated 38 and 37 cells from ESD-EpiSC and EctlC population, respectively, for single cell Q-PCR assays. The single cell Q-PCR results showed that Eras was exclusively highly expressed in EctlCs, while Stmn3 had a little noise expression in ESD-EpiSCs (Supplementary Figure S3Ab, e). Moreover, Fgf5 and Nodal were preferentially expressed in ESD-EpiSCs (Supplementary Figure S3Aa, d), whereas the expression of Sox1, a NPC marker, and K18, an epidermis marker, was barely detected in either EctlCs or ESD-EpiSCs (Supplementary Figure S3Ac, f). Next, we assessed the in vivo expression pattern of Eras and Stmn3 in early mouse embryo by whole-mount in situ hybridization. The Eras was highly and specifically expressed in vivo at the anterior part of the mouse epiblast at E7.0 (Figure 3Bb), corresponding to the ectoderm stage (Li et al., 2013). However, Stmn3 was expressed in the whole epiblast and extraembryonic ectoderm, and had no significant region specificity (Supplementary Figure S3B). These data indicate that compared with Stmn3, Eras is a better marker for EctlCs. Together, these results suggest that EctlCs could represent a transient ectoderm population in mouse embryo, and the differentiation potency is associated with BMP activity. EpiSCs is derived from egg cylinder epiblast at E5.5, and EctlCs may be corresponding to the ectoderm stage at E7.0. BMP4 induces mesendodermal differentiation at the late epiblast stage, but promotes epidermal induction at the ectoderm stage (Li et al., 2013). In order to investigate the distinct mechanisms of BMP4 functions at different stages, the activation of BMP signaling in ESD-EpiSCs and EctlCs was assessed. First, these two types of | 459 cells were treated with BMP4 for 1 h, 6 h, and 24 h, respectively. Then, phosphorylated Smad1/5/8 (p-Smad1/5/8), an active BMP downstream effector, was analyzed by western blot. In both ESD-EpiSCs and EctlCs, the phosphorylation of Smad1/5/8 was clearly induced by BMP4 at 1 h and 6 h, but was diminished at 24 h (Figure 3C), indicating that BMP signaling cascade in ESD-EpiSCs was the same as that in EctlCs. To distinguish possible mechanisms of BMP4 actions in different cells, RNAs were prepared from ESD-EpiSCs and EctlCs treated with BMP4 for 3 h, and were analyzed by microarray assays. The results showed that 371 and 726 genes were upregulated (≥2-fold) in ESD-EpiSCs and EctlCs, respectively (Figure 3D). Detailed analysis demonstrated that only 87 genes were upregulated in both cells, suggesting that BMP4 regulates distinct groups of downstream genes in different cells. Gene Ontology term enrichment assays revealed that the upregulated genes in ESD-EpiSCs were mostly involved in the mesendoderm differentiation, whereas the upregulated genes in EctlCs were highly associated with the epidermal fate commitment (Figure 3E). To further validate microarray data, Q-PCR assay was conducted. Notably, Mesp1, Flk1, Hoxd1, and Hoxb9 genes, which play crucial roles in mouse embryo gastrulation and mesoderm differentiation (Saga et al., 1999; Fehling et al., 2003), were upregulated only in ESD-EpiSCs after BMP4 treatment (Figure 3F). Krt6b (K6b), Krt13 (K13), Krt83 (K83), and Ovol2 genes, which are essential for epidermis development (Wells et al., 2009), were specifically activated in EctlCs (Figure 3F). Therefore, in different cells, BMP signaling may cooperate with distinct cofactors to program the unique cell fate commitment, such as mesendoderm fate from ESD-EpiSCs and epidermal fate from EctlCs. Inhibition of FGF – Erk signaling promotes ectodermal specification Both Nodal/Activin and bFGF signalings are required for ESD-EpiSCs maintenance (Brons et al., 2007; Tesar et al., 2007; Kojima et al., 2014), and transient Nodal inhibition promotes EctlCs derivation (Figure 1). Then, we asked whether the inhibition of FGF– Erk signaling could also generate similar effect. ESD-EpiSCs were treated under four conditions, Control, BMP4, FGF– Erk signaling inhibitor PD173074 (PD17) (Trudel et al., 2004), and BMP4 plus PD17, for 3 days. Similar to SB43 treatment, distinct cell morphologies were detected, especially that BMP4/PD17-treated cells displayed epidermal morphology (Figure 4A). The gene expression pattern was analyzed by Q-PCR. Consistently, the expression of neural markers Sox1, Pax6, and MAP2 was sharply increased in ESD-EpiSCs treated with PD17 (Figure 4Ba). The expression of epidermal markers K5, K8, K14, K18, and DNp63 was dramatically enhanced in cells treated with both BMP4 and PD17 (Figure 4Bb). The expression of mesendodermal markers Flk1, Sox17, and Gata6 was only induced by BMP4 (Figure 4Bc). Western blot analysis revealed that phosphorylated Erk (p-Erk) was reduced within 1 h after PD17 treatment (Figure 4C), indicating that FGF– Erk signaling activity was inhibited. The results show that, similar to Nodal inhibition, EctlCs could also be derived from ESD-EpiSCs through the inhibition of FGF– Erk activity. 460 | Li et al. Figure 3 Downstream transcriptional networks of BMP4 are different between ESD-EpiSCs and EctlCs. (A) Microarray gene expression heat-map of ESD-EpiSCs, EctlCs, NPCs, and epidermis. Heat-map colors (red, upregulation; green, downregulation) indicate gene expression in units of standard deviation from the mean across all samples. (B) Genes upregulated only in EctlCs, including Eras, Sez6, Stmn3, and Stmn4 (a). Eras expression pattern in E7.0 mouse embryo (b). (C) Western blot analysis of p-Smad1/5/8 and Smad1 in ESD-EpiSCs and EctlCs that were treated with BMP4 for 1 h, 6 h, and 24 h. (D) ESD-EpiSCs and EctlCs were treated with BMP4 for 3 h. The same types of cells treated with 4 mM HCl-1‰ BSA (BMP4 solution buffer) were used as control. Comparison of upregulated genes in response to BMP4 is performed between ESD-EpiSCs and EctlCs. (E) GO analysis of biological processes of the overlap genes in microarray analysis described in D. (F) Gene expression levels in ESD-EpiSCs and EctlCs without or with BMP treatment for 3 h. To investigate the possible crosstalk between Nodal/Activin and FGF signaling pathways during the ectoderm formation, p-Erk levels were examined in ESD-EpiSCs treated with Nodal inhibitor SB43 in the absence or presence of BMP4. Indeed, p-Erk level was reduced in ESD-EpiSC treated with SB43 for 6 h (Figure 5Aa), suggesting that FGF pathway is modulated by SB43. In contrast, inhibition of FGF signaling by PD17 had no effects on p-Smad2 levels at 6 h (Figure 5Ab). To further confirm this pathway regulation, we asked whether FGF signaling could interfere Nodal inhibition-induced ectodermal specification from ESD-EpiSCs. As expected, the expression of neural markers Sox1, Pax6, and MAP2 was reduced in ESD-EpiSCs treated with both bFGF and Ectodermal progenitors derived from epiblast stem cells | 461 Figure 4 Inhibition of FGF – Erk signaling promotes ectoderm commitment in ESD-EpiSCs. (A) The morphology of cells differentiated in four kinds of medium: CDM without any other factor (Control), CDM with BMP4 (BMP4), CDM with PD173074 (PD17), and CDM with BMP4 and PD173074 (BMP4/PD17). BMP4: 10 ng/ml; PD173074: 50 ng/ml. Scale bar, 500 mm. (B) Marker gene expression in cells differentiated under the four medium conditions for 3 days. (C) Western blot analysis of phospho-Erk (p-Erk) and Erk in ESD-EpiSCs that were cultured with control medium (C), BMP4 (B), PD173074 (PD), BMP4 and PD173074 (B/PD) for 1 h, 6 h, and 24 h. BMP4: 10 ng/ml; PD173074: 50 ng/ml. SB43 (SB43 compared with SB43+bFGF in Figure 5Ba). The expression of epidermal markers K14, K15, and K18 was also decreased in BMP4/SB43/bFGF-treated cells, compared with BMP4/SB43treated cells (Figure 5Bb). The expression of mesendodermal markers T, Flk1, and Gata6 was not promoted in BMP4/bFGFtreated cells, compared with BMP4-treated cells (Figure 5Bc). On the other hand, the expression of neural markers Sox1, Pax6, and MAP2 was not altered with the addition of Activin (PD17 compared with PD17+Activin in Figure 5Bd), neither the expression of epidermis markers K14, K15, and K18 (BMP4+PD17 compared with BMP4+PD17+Activin in Figure 5Be). The expression of mesendodermal markers T, Flk1, and Gata6 was not significantly altered after BMP4 and Activin treatment (BMP4 compared with BMP4+Activin in Figure 5Bf). These results suggest that both Nodal signaling and FGF signaling should be alleviated during ectoderm formation, and Nodal inhibition promotes the ectoderm formation partially through interfering FGF– Erk signaling. Discussion It has been known for decades that in vertebrates, ectoderm, mesoderm, and endoderm, three basic germ layers are generated during gastrulation. However, until recently, we demonstrate that the bi-potential ectodermal progenitors are located in the anterior/proximal part of the ectodermal layer in E7.0 mouse embryo in vivo (Li et al., 2013). In this study, we characterized an ectodermal intermediate progenitor population during EpiSCs differentiation by inhibiting Nodal or FGF signaling in vitro. BMP signaling promotes the specification of EpiSCs to mesendoderm fate, while it programs the commitment of ectodermal progenitors to epidermal lineage (Figure 6). Nodal signaling plays an essential role to ensure the appropriate embryo patterning in vivo, and anterior visceral endoderm (AVE) generates Nodal antagonists Lefty1 and Cerberus-1 (Cer1) to prevent the enlarged primitive streaks (Perea-Gomez et al., 2002). The balance between Nodal activity and its antagonists is crucial for the anterior – posterior (A – P) patterning of the epiblast (Thomas and Beddington, 1996; Kimura et al., 2000). In mouse EpiSCs, Nodal signaling is imperative in mesendodermal differentiation and pluripotency maintenance (Vallier et al., 2009a). We found that repression of Nodal signaling by SB43 in ESD-EpiSCs could induce an ectodermal progenitor population, which has dual potency to generate epidermal or neural cells in a BMP4dependent manner (Figure 1). Furthermore, the transient ectoderm progenitors could be derived by brief inhibition of Nodal signaling with SB43 or A-83-01 for 15– 24 h during ESD-EpiSCs differentiation (Figure 2 and Supplementary Figure S2). Clearly, the 462 | Li et al. Figure 5 The relationship between Nodal signaling and FGF–Erk signaling during ectoderm commitment from ESD-EpiSCs. (A) Western blot analysis of phospho-Erk (p-Erk) and Erk (a), phospho-Smad2 (p-Smad2) and Smad2 (b) in ESD-EpiSCs that were cultured with control medium (C), BMP4 (B), SB43 (SB), BMP4 and SB43 (B/SB), PD173074 (PD), BMP4 and PD173074 (B/PD) for 1 h, 6 h, and 24 h. BMP4: 10 ng/ml; SB43: 10 mM; PD173074: 50 ng/ml. (B) (a–c) Marker gene expression patterns of cells cultured in eight kinds of medium for 3 days: CDM without any other factor (Ctrl), CDM with BMP4 (BMP4), CDM with SB43 (SB43), CDM with BMP4 and SB43 (BMP4/SB43), and the above four treatments with bFGF. bFGF: 12 ng/ml. (d–f) Marker gene expression pattern of cells cultured in eight kinds of medium for 3 days: CDM without any other factor (Ctrl), CDM with BMP4 (BMP4), CDM with PD173074 (PD), CDM with BMP4 and PD173074 (BMP4/PD17), and the above four treatments with Activin. Activin: 20 ng/ml. The values are represented as mean + SD. **P , 0.01. N.S., non-significant difference between the two groups (P . 0.05). ectoderm progenitor could be induced from the pluripotent EpiSCs in vitro. FGF signaling is important for early embryonic development and the self-renewal of EpiSCs (Ciruna and Rossant, 2001). In mouse embryo, Fgf4 and Fgf8, which are expressed in the primitive streak (Niswander and Martin, 1992; Kinder et al., 1999), induce mesoderm formation and regulate gastrulation movement. Treatment with both BMP4 and PD17 increases the proportion of K8/K18-positive Ectodermal progenitors derived from epiblast stem cells | 463 Figure 6 The model for ectoderm formation during mouse embryonic development and stem cell differentiation. With low level of Nodal signalling in the anterior ectoderm, ectodermal progenitor populations are formed. The formation of ectodermal cells can be mimicked by stem cell differentiation process in vitro. ESD-EpiSCs lose their ability to differentiate into mesendodermal cells by inhibition of Nodal signalling. Meanwhile, they are induced to an ectoderm-like stage. The cells at this stage develop into neurons in the absence of BMP4 and give rise to epidermis in the presence of BMP4. populations during ESC differentiation (Stavridis et al., 2010), indicating that epidermis development is enhanced by these two factors. Treatment with PD17 could promote ESD-EpiSCs to become ectodermal lineages (Figure 4), suggesting that probably FGF–Erk signaling should be attenuated for ectoderm commitment. Interestingly, p-Erk level was reduced after blocking Nodal signaling by SB43 (Figure 5). However, p-Smad2 level was hardly affected by a FGF signaling inhibitor PD17 (Figure 5). Altogether, FGF signal repression might be one of the downstream processes caused by Nodal inhibition during the ectoderm formation. Moreover, our microarray and Q-PCR data revealed that Eras, Sez6, Stmn3, and Stmn4 genes were specifically and highly expressed in EctlCs derived from pluripotent stem cells in vitro (Figure 3). Furthermore, single cell Q-PCR results showed that Eras is a specific marker for EctlCs (Supplementary Figure S3A). As expected, in situ hybridization assay confirmed that Eras is exclusively expressed in the anterior part of epiblast in E7.0 mouse embryo in vivo (Figure 3). Thus, the genes identified in the study could be used as potential ectoderm markers, labeling the transient ectodermal progenitors. BMP4 signal is imperative for the cell fate commitment, and it induces mesoderm development in EpiSCs and promotes epidermal specification in ectoderm. Nevertheless, so far, how to distinguish downstream targets associated with BMP4 to participate in the specification of different lineages is still largely unclear. Our microarray data revealed that K6b, K13, K83, and Ovol2 are possible BMP4 effectors to induce epidermis differentiation (Figure 3); meanwhile, Mesp1, Flk1, Hoxd1, and Hoxb9 genes are BMP downstream mediators to promote mesoderm development. These results indicate that the same signaling pathway could activate distinct downstream effectors to program the commitment of different cell fate, depending on various states of the cells, as well as surrounding environments. The cell fate commitment in vivo or in vitro is achieved by the instructive interactions among multiple extracellular signaling pathways, as well as the extrinsic and intrinsic regulators. The findings in the study shed new light on the understanding of not only the formation of ectoderm, but also the generation of all three basic germ layer, including ectoderm, mesoderm, and endoderm. Materials and methods ESD-EpiSCs culture and monolayer differentiation ESD-EpiSCs were cultured in chemically defined medium (CDM) supplemented with 20 ng/ml Activin A (R&D systems) and 12 ng/ml bFGF (Invitrogen) (CDM/AF). Cells were passaged every 3 days through dissociation with 2 mg/ml collagenase IV (Invitrogen), plated onto cell culture dishes that were pre-coated with FBS for 24 h at 378C, and then washed twice in PBS before use. CDM contains 50% IMDM (Gibco) and 50% F12 NUT-MIX (Gibco), supplemented with 7 mg/ml insulin (Roche), 15 mg/ml transferrin (Roche), 450 mM monothioglycerol (Sigma), and 5 mg/ml BSA (Roche). For monolayer differentiation, ESD-EpiSCs were cultured in CDM/AF for 1 day, washed twice in CDM, and then differentiated in CDM containing different factors or inhibitors, including 10 ng/ml BMP4 (R&D systems), 10 mM SB431542 (Sigma), 1 mM A-83-01 (Tocris Bioscience), 20 ng/ml Activin, 12 ng/ml bFGF (Pufei), or 50 ng/ml PD173074, for 3 days. To detect the definitive ectoderm stage, ESD-EpiSCs colonies were fragmented into small pieces after treatment with 2 mg/ml collagenase IV (Invitrogen). The clumps were cultured in CDM supplemented with SB43 or A-83-01 for 12– 30 h. After SB43 treatment, cells were washed twice to remove residual inhibitors, and cultured in CDM supplemented with or without BMP4 for 2 days. RNA preparation and Q-PCR analysis Total RNA was extracted from cells using Trizol reagent (Pufei), according to the manufacturer’s instructions. Reverse transcription was performed with 1.0 mg of total RNA using SuperScript III reverse transcriptase (Invitrogen). Quantitative PCR (Q-PCR) was 464 | Li et al. performed in accordance with the manufacturer’s instructions, using Opticon Monitor (Eppendorf). Single cell Q-PCR was performed as described previously (Picelli et al., 2014). Each sample was analyzed in triplicate, with the Ct values averaged and then normalized to GAPDH control. The primers are listed in Supplementary Table S1. Western blot Immunocytochemistry was performed as described previously (Sheng et al., 2010). The following antibodies were used: antiphosphorylated Smad (pSmad) 1/5/8 (1:2000; Cell Signaling Technology), anti-Smad1 (1:2000; Cell Signaling Technology), anti-phosphorylated Erk1/2 (1:1000; Cell Signaling Technology), anti-Erk1/2 (1:3000; Santa Cruz). Immunofluorescence analysis Immunocytochemistry was performed as described previously (Gao et al., 2001). The following primary antibodies were used: mouse monoclonal anti-Cytokeratin 18 (Krt18/K18) (1:150, Abcam), mouse monoclonal anti-Mtap2/MAP2 (1:200, Sigma), goat polyclonal anti-T (1:200, R&D systems). Primary antibodies were detected with Fluorescein isothiocyanate (FITC)- and Cy3-conjugated secondary antibodies (1:500; Jackson Immunoresearch). Whole-mount in situ hybridization Whole-mount in situ hybridizations were performed as described previously (Zhu et al., 2014). The probes of Eras and Stmn3 were PCR-amplified from mouse cDNA. The PCR primers are listed in Supplementary Table S1. Microarray analysis The experiments were described in previous study (Zhang et al., 2010). Agilent Whole Mouse Genome Oligo 4X44K Microarrays (onecolor platform) were used to analyze the gene profile of ESD-EpiSCs, ectoderm-like cells (EctlCs), ectoderm-like cells differentiated in CDM for 2 days (NPCs), and ectoderm-like cells differentiated in CDM plus BMP4 for 2 days (Epidermis). In order to explore the BMP4 transcriptional networks, ESD-EpiSCs were treated with 4 mM HCl-1‰ BSA (BMP4 solution buffer used as control) or BMP4 for 3 h, and EctlCs were treated with 4 mM HCl-1‰ BSA (control) or BMP4 for 3 h. Statistics Each experiment was performed at least for three times, and similar results were obtained. The data are presented as mean + SD. Student’s t-test was used to compare the effects of all treatments. 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