Download Metabolism

BIOL 191 Lab Video
Metabolism Part I and Part II
READ THIS DOCUMENT BEFORE COMING TO LAB
Note: Metabolism encompasses all of the chemical reactions involved in life processes. Energy, in the
form of ATP, is central and essential for life processes to occur. So we can split metabolism into two
parts:
1. Catabolism which are reactions that convert nutrients into usable energy – ATP.
2. Anabolism which are reactions that use the ATP energy, primarily to build the large organic
macromolecules needed for cellular structures and functions (carbohydrates, lipids, nucleic acids,
but mostly proteins).
Each of these reactions requires a specific enzyme that increases the rate of the reaction. Most enzymes
are proteins so are genetically encoded. Each organism undergoes metabolism in certain ways because
they are limited by their DNA which determines their enzymes. Their enzymes determine the chemical
reactions. Their chemical reactions determine their metabolism capabilities. There is a wide breadth of
knowledge about specific microbes and how they specifically metabolize. Because of this we can test an
‘unknown’ microbe and compare our test results to characteristics of organisms we know about.
Metabolism Part I https://www.youtube.com/watch?v=GLwsj13AACs (16:34)
Catabolism involves the breakdown of nutrients, getting the energy and atoms from the nutrients, and
converting the nutrient energy into ATP molecules.
i.
The first step in catabolism is GLYCOLYSIS. Glycolysis involves the breakdown of
carbohydrates, such as glucose, into
a. Where does glycolysis occur in all cells?
b. Examples of sugars (carbohydrates) other than glucose that may be converted to pyruvate
(depending on the organism) are:
Note: Whether or not the organism can metabolize those sugars depends on its DNA, which determines if
they have the enzymes for the chemical conversions.
c. Tests can be done that detect whether or not the chemical reactions occurred.
i. What does the TSI test detect?
ii. What does the MSA test detect?
d. What are three examples of organisms that convert mannitol to pyruvate?
Note: There are two main processes that convert most of the energy in the pyruvate into ATP:
Fermentation and Respiration
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ii.
FERMENTATION. During fermentation, pyruvate will then be broken down further. No
oxygen is used during fermentation and it does not involve an electron transport chain like as
respiration does.
If an organism can ferment a specific reactant, such as lactose, (because they have the correct
enzymes), characteristic end-products or by-products can often be detected.
a. What are four common end-products of fermentation? What species produce these endproducts?
b.
the bacteria can make will determine which fermentative endproducts are made.
c. What does the MR (methyl red) of the MRVP test determine?
d. What does the VP (Voges-Proskauer) of the MRVP test determine?
Note: Fermentation only produces a few ATPs (2). More are produced if the organism undergoes respiration (see next).
iii.
RESPIRATION. Respiration is not fermentation. It requires additional enzymes and chemical
reactions. These occur during the Krebs cycle and an electron transport chain. Respiration may
include oxygen or some other molecule that takes its place. Fermentation does not have a Krebs
2
cycle or an electron transport chain
a. If the pyruvate is converted to acetyl CoEnzyme A (acetyl CoA), it may proceed to the
cycle.
Note: The Krebs cycle is a series of reactions where each product becomes the reactant in the
next reaction, until the final product is one of the first reactants.
b. During the Krebs cycle, CO2 is produced so you may see the production of
.
c. Nutrients other than carbohydrates, such as fats and proteins, may be metabolized to produce
ATP.
i. Fats are made of:
l
and
1. The glycerol may enter glycolysis and be converted to pyruvate.
2. Fatty acids may be converted to acetyl CoA be further metabolized from
there.
ii. Proteins can be broken down into
, some of
which, after chemical conversions, can be metabolized in glycolysis or the Krebs
cycle. But first the amino acids must be deaminated (NH2 removed) which creates
ammonia (NH3 or NH4+), a toxic by-product.
1. The amino acid tryptophan can enter glycolysis and, therefore, converted into
pyruvate. A by-product of tryptophan conversion is
, which is detected by the indole test.
2. Cysteine can be converted directly into a Krebs cycle reactant. This
conversion produces a
by-product which can be detected.
3. Note: In some organisms (humans included), toxic ammonia is produced and
converted into a nontoxic waste product, urea. Some bacterial species, such as
can produce the enzyme
which
breaks urea down for further use and releases ammonia. Ammonia raises the pH
which can be detected.
iv.
During the Krebs cycle,
are ‘collected’. They are passed from one
electron carrier molecule to another to make more ATPs in the electron transport chain.
Note: During some of the reactions of glycolysis and the Krebs cycle, electrons are pulled from the
reactants during the chemical reactions. These electrons feed into the electron transport chain where most
of the ATP is produced.
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Metabolism Part 2 https://www.youtube.com/watch?v=w4aPHjrMByY (3:04)
Electron transport chain continued.
i.
During the electron transport chain, the electrons from the Krebs cycle (note: and glycolysis) are
passed from one molecule to another (note: these are called electron carriers- the video
calls them electron ‘magnets’), each with a higher
This is the relative strength of the attraction a molecule has for an electron.
.
Note: Each successive carrier molecule that picks up an electron has a greater electronegativity than the
previous carrier, and, therefore, a greater ‘pull’ on the electron.
ii.
The electrons flow down the chain toward the final electron acceptor (which has the highest ‘pull’
in the chain). What are three examples of final electron acceptors?
iii.
As the electrons are passed, they release
iv.
This energy is used by the enzyme
.
.
This enzyme catalyzes the reaction that makes ‘lots’ of ATP.
ATP synthase
Note: ADP + phosphate
ATP
Note: At peak efficiency, the complete breakdown of glucose during glycolysis and aerobic respiration
produces 38 ATPs in prokaryotes and 36 ATPs in eukaryotes. This ATP can then be used for anabolic
process (such as synthesizing proteins).
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