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a
b
Supplemental Figure 1: Treemaps of GO enrichment results at DAG25.
(a): Treemap of biological processes at DAG25 using GO
enrichment results. At least 2-fold change genes at DAG25 used
for GO enrichment analysis at
http://omicslab.genetics.ac.cn/GOEAST/index.php, and the GO enrichment
results together with their p-values (<0.05) utilized for the treemap
analysis at http://revigo.irb.hr. The size of each area calculated
according to the formula abs(log10(p-value)).
(b): Treemap of molecular functions at DAG25 using GO
enrichment results. At least 2-fold change genes at DAG25 used
for GO enrichment analysis at
http://omicslab.genetics.ac.cn/GOEAST/index.php, and the GO enrichment
results together with their p-values (<0.05) utilized for the treemap
analysis at http://revigo.irb.hr. The size of each area calculated
according to the formula abs(log10(p-value)).
300
Genes in sublocation
250
200
150
DAG60
100
DAG25
50
0
Supplemental Figure 2: Distributions of at least 2-fold change regulated
genes in different locations of cell at DAG60 (blue bar) and DAG25
(red bar).
Supplemental Figure 3: Heatmap presentations of the genes with at least
4-fold change at DAG60 in the four samples (60W, 60M, 25W and
25M). Gene expression abundance indicated by different colors, with
yellow represented strong signal and blue represented weak signal.
Genes used for this presentation and Fig. 4 were listed in the
Supplemental Table 2.
a
b
Supplemental Figure 4: Prediction of protein interactions in the upregulated genes (at least 2-fold change) (a) and down-regulated genes (at
least 2-fold change) (b) of htd3 at DAG60. The results predicted based
on the BAR Rice Interactions Viewer (http://bar.utoronto.ca/interactions/cgibin/rice_interactions_viewer.cgi).