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Biology 40S Unit 1: Classifying and Understanding Life Developed by Trevor Boehm Hutterian Interactive TV Prairie Rose School Division 1 Major Topics in Unit 1 Definition of Life Linnean system of classifying life – The five kingdoms (Monera, Protista, Fungi, Plantae, and Animalia) – Prokaryotic (bacteria / archaea) and eukaryotic (fungi / animal / plant) cells – Domains of life (bacteria / archaea / eukaryotic) Cell theory – Components of cells and their functions – Differences between plant, animal, and bacterial cells Structure of DNA – Nucleotide bases – DNA replication Life processes: – Cellular respiration – Cell division (mitosis) and the cell cycle – Protein synthesis 2 What is “Life”? What a silly question, right? I dare you to answer it without using words like “alive” or “living”. And no trying to explain it with examples, either! Not so easy, eh? 3 Life Comes in All Shapes and Sizes There are currently 2 million recognized species of living organisms on earth… maybe a lot more. Some are so small they can’t be seen with a microscope. Some are larger than a truck! Some live for hundreds of years. Some live for a few hours. Some walk around. Some swim. Some fly. Some don’t seem like they’re moving at all. All of the images on the left of this PowerPoint are alive, and they look nothing alike! Obviously, we can’t use shape or size (what it looks like) to tell if something is alive or not. 4 Characteristics of Life All life shares the following basic characteristics: …is made up of cells. …can reproduce. …grows and develops over time. …produces and uses energy. …responds to changes in environment. …moves (internal or external). …passes genetic info on to next generation. …is highly organized. 5 Many Living Organisms Having established what “being alive” looks like, we have another problem… there’s a lot of life on earth! Scientists have identified more than 2 million unique types of organisms on earth. It is estimated that 40 million species inhabit the earth. There may be millions of types of living organisms in the tropical rain forest and oceans yet undiscovered. Every year, thousands of new species are discovered. In order to make sense of all this life in our world, we need a way to organize living organisms into groups. 6 The Purpose of Classifying There are two purposes to having a classification system for living organisms: – To assign a single, unique, and universal name to each organism. – To place organisms into groups that have real biological meaning. That is to say, we want organisms that are biologically similar to be in the same group. A universal system is necessary to have clear communication among scientists worldwide. We can’t have scientists in Canada using one system and scientists in Europe using a completely different one. If that were the case, they wouldn’t be able to easily cooperate or share their work. 7 Taxonomy Taxonomy is the branch of biology that deals with classifying living organisms. There have been several attempts through history to develop an appropriate classification system for living organisms… …and scientists are still working on it, as we will see. 8 Aristotle’s Taxonomy Organisms were first classified more than 2,000 years ago by Greek philosopher Aristotle. He classified organisms as either plant or animal. Animals were further divided into blood and bloodless. He also divided animals into 3 groups according to how they moved - walking, flying, or swimming (land, air, or water). He grouped plants based on shape and stem, into categories such as trees, shrubs, and herbs. His system was used into the 1600s, but is no longer used today. Aristotle’s system made sense for his time, but as science advanced, some problems appeared: – There were problems using common names for organisms • These names could vary based on country and language. • Sometimes names were unclear (Malus meant apple, and Malus Persica meant peach). • Sometimes the names were long and cumbersome. – Many new organisms were being discovered as the world was explored by Europeans. – In the late 1500s and early 1600s, scientists began developing the first microscopes, and saw types of life Aristotle never 9 imagined. Binomial Nomenclature The two-name system in common use today is called the binomial system of nomenclature. Binomial = 2 names = genus and species. The first word of the name is the genus name, and the second word is the species identifier. It is often an adjective describing the organism, its geographic location, or the person who discovered it. Using this system, the domestic dog is Canis familiaris. Canis is the genus name for the group of animals that includes dogs, wolves, coyotes, and jackals. The word familiaris acts as a descriptor to further differentiate the domestic dog from its wild cousins. Every organism has its own name, and related organisms are grouped together. This system is called the Linnean System, after Carolus Linnaeus, the Swedish naturalist who developed it in the mid-1700s. 10 Genus and Species We still use the Linnean system of binomial nomenclature today. Scientific name of an organism consists of its genus and species (for example, the scientific name of humans is Homo sapiens). – A species is the smallest group of organisms which can produce offspring capable of reproduction. – A genus is a group of closely related, similar species. Latin is used because it is a dead language (does not change) and can be used in many countries. When we use the Latin name for an organism, we always capitalize the genus but not the species Identifier. We also print the name in italics or underline them. For example: – – – – Acer rubrum is the red maple tree. Acer is the Latin name for maple (genus) rubrum is the Latin word for red (species) The name can be abbreviated as A. rubrum. 11 Seven Levels of Classification Just a genus and species, however, doesn’t make a classification system. Remember, today we have 2 million species to classify, and we can expect to add many more in the future. The Linnean System included seven levels of grouping to organize similar organisms together: – – – – – – – Kingdom Phylum (Division in the plant kingdom) Class Order Family Genus Species 12 King Phillip Cried Out… Kingdom Phylum / Division Class Order Family Genus Species 13 5 Kingdoms Linnaeus classified all organisms into two kingdoms, plantae and animalia. Modern taxonomists recognizes that many organisms are neither plant or animal. Today, we have 5 major kingdoms: – – – – – Monera Protista Fungi Animalia Plantae Organisms are sorted into one of these 5 based on their characteristics. 14 Five Kingdoms 15 Linnean Classification of a Human Being Kingdom: Animalia (with eukaryotic cells having cell membrane but lacking cell wall, multicellular, heterotrophic) Phylum: Chordata (all animals with a notochord) Class: Mammalia (vertebrate, hair, warm-blooded, bears live young) Order: Primates (collar bone, eyes face forward, grasping hands with fingers, two types of teeth: incisors and molars) Family: Hominidae (upright posture, large brain, flat face, hands and feet have different specializations) Genus: Homo (s-curved spine, "man") Species: Homo sapiens (high forehead, welldeveloped chin, skull bones thin) 16 Characteristics Used to Determine Kingdom 1. Prokaryotic or Eukaryotic 2. Autotrophic or Heterotrophic 3. Unicellular, Multicellular, or Colonial 4. Motile or Sessile 17 Prokaryotes vs. Eukaryotes Prokaryotes are the simplest cells – – – – – – – – Eukaryotic cells are much more complex – – – – – – – The prokaryotic cell is bounded by a cell membrane, but does not contain any internal membrane-bound organelles. Instead of a nucleus, it contains a region rich in DNA called a nucleoid. Surrounding the nucleoid is a region of cytoplasm rich in ribosomes, small structures which do the job of synthesizing proteins. Finally, surrounding the plasma membrane is a cell wall Prokaryotes can have surface appendages which do particular jobs. Flagella are used for locomotion, for example. Bacteria (monerans) are prokaryotes. Prokaryotes can be either autotrophic or heterotrophic. There are no multicellular prokaryotes. Much of the cell is taken up by organelles bound by their own membranes (mitochondrea, chloroplasts, nucleus, vacuoles, lysomes, etc.) Eukaryotic cells have a nucleus which contains all of the cell's DNA. Both cell types have many, many ribosomes, but the ribosomes of the eukaryotic cells are larger and more complex than those of the prokaryotic cell. Eukaryotic cells are larger than prokaryotes. There are multicellular and unicellular eukaryotes. Like prokaryotes, eukaryotes can also be either autotrophic or heterotrophic. Protists, fungi, plants, and animals are all eukaryotes. “Eukaryote” means “true nucleus” while “prokaryote” means “before the nucleus”. 18 Diagram of Eukaryotic and Prokaryotic Cells 19 Common Features of Prokaryotes and Eukaryotes The common features of prokaryotic and eukaryotic cells are: 1. DNA, the genetic material contained in one or more chromosomes and located in a nonmembrane bound nucleoid region in prokaryotes and a membranebound nucleus in eukaryotes 2. Plasma membrane, which separates the cell from the surrounding environment and functions as a selective barrier for the import and export of materials 3. Cytoplasm, the rest of the material of the cell within the plasma membrane, excluding the nucleoid region or nucleus, that consists of a fluid portion called the cytosol and the organelles and other particulates suspended in it 4. Ribosomes, the organelles on which protein synthesis takes place 20 Diagram - Common Features of Prokaryotes and Eukaryotes 21 Autotrophic vs. Heterotrophic These terms relate to how an organism gets its food. Autotroph - organism that makes organic compounds from inorganic sources. Plants, some bacteria, and some protista make their own food using light energy (photosynthesis). Some organisms are also capable of synthesizing energy chemically (chemosynthesis). Heterotroph - organism that cannot make organic compounds from inorganic sources. They obtain their organic compounds by consuming other organisms. Almost all animals, fungi and some Protista and bacteria. All food molecules come ultimately from autotrophs, either directly or indirectly. 22 Unicellular vs. Multicellular vs. Colonial These terms refer to how many cells an organism has. Unicellilar – one-celled. Bacteria and most protists are unicellular, and a few fungi are also unicellular. Multicellular – many-celled, with different types of specialized cells. All animals and plants and most fungi are multicellular. Colonial – many-celled, but all exactly the same type of cell. Some protists (algae) are colonial. 23 Sessile vs. Motile Whether the organism is stationary (sessile) or capable of self-propelled motion (motile). Fungi and plants are sessile. Bacteria, protists, and animals are motile. 24 Chart Showing Classification into Kingdoms Kingdom Key Characteristics Examples Bacteria, blue-green algae Monera Prokaryotic Unicellular Autotrophic or heterotrophic Sessile or motile Protista Eukaryotic Unicellular or colonial Autotrophic or heterotrophic Sessile or motile Ameba, paramecium, euglena, algae Eukaryotic Mostly multicellular Heterotrophic Sessile Mushrooms, molds & mildews, yeast (unicellular) Eukaryotic Multicellular Autotrophic Sessile Moss, ferns, flowering plants, bushes, trees Eukaryotic Multicellular Heterotrophic Motile Insects, jellyfish, hydra, crabs, fish, birds, lions, tigers, and bears (oh my!) Fungi Plantae Animalia 25 General Rules for Classifying into Kingdoms Yes, I know it looks like a lot to remember. Here are a couple generalizations that may help you keep some of that table straight: – – – – – Only one kingdom has organisms that are prokaryotic (the moneran kingdom). For the most part, any organism that is unicellular and eukaryotic is a protist (one exception is yeast, a unicellular fungus) . Fungi have the same characteristics as plants, except that Fungi are heterotrophic and plants are autotrophic, and their cell walls are different . Animals are the only motile multicellular group. Most of the autotrophic organism we study have chlorophyll which gives them a greenish appearance. So being "green" is an important clue --- it indicates they are autotrophic (ex: blue-green algae, algae, plants). 26 Three Domains of Life (To Complicate Matters) Starting in the early 1970s, scientists began to find evidence for a previously unknown group of single-celled organisms. These organisms lived in extreme environments - deep sea hydrothermal vents, "black smokers", hot springs, the Dead Sea, acid lakes, salt evaporation ponds - environments that scientists had never suspected would contain much life (It was there all along, we had just never thought to look for it!). These unusual organisms were considered to be bacteria and named archaebacteria ('ancient' bacteria). They did not need sunlight or oxygen to grow, instead making all of their food from hydrogen sulfide and other chemicals spewing from the volcanic vents, living in a complex ecosystem with many other living organisms near the warm, mineral-rich waters of the vents. However, as scientists studied the archaebacteria, they found that their DNA is more than 50% different from the DNA of the Monera. To put this in perspective, archaea have more DNA in common with eukaryotic organisms than they do with bacteria. Based on this, scientists propose that there should be a new category of classification of life - the Domain, a classification category above Kingdom. 27 Three Domain System All eukaryotes are members of the domain eukarya. Prokaryotes are seperated into two domains: – Traditional bacteria are members of the domain eubacteria. – Archaea are members of the domain archaea. 28 Three Domains 29 Three Domains 30 About Archaea Archaea look like bacteria - that's why they were classified as bacteria in the first place. The unicellular organisms have the same sort of rod, spiral, and marble-like shapes as bacteria. Archaea and bacteria share some DNA, so they function similarly in some ways. But archaeans also share DNA with eukaryotes, as well as having some DNA that is completely unique. Archaea are known for their preferred living conditions. They are often referred to as “extremophiles”, or “extreme lovers”. – Some of these organisms live in hot acidic environments; they are referred to as thermoacidophiles. – Those living in salty environments are called “halophiles”(halo=salt). – Methanogens are archaea that produce methane. Methonogens live in anaerobic conditions such as mash bottoms, intestines and in underground rocks. 31 Cell Theory Cell theory states: – All living organisms are made up of cells and the products of those cells. – All cells carry out their own life functions. – New cells come from other living cells. 32 Relative Size of Cells 33 General Characteristics of Cells Cells are complex and highly organized – They contain numerous internal structures Some have membrane bound organelles while others do not. Cells contain genetic instructions (DNA) and machinery to use it – Genes are instructions for cells to create specific proteins – All cells have ribosomes, which are used to make proteins Cells acquire and utilize energy Cells can perform a variety of chemical reactions – Transform simple organic molecules into complex molecules – Breakdown complex molecules to release energy – Metabolism = all reactions performed by cells Cells can engage in mechanical activities – Cells can move – Organelles can move – Cells can respond to stimuli (chemotaxis - movement towards chemicals, phototaxis - movement towards light, hormone responses, touch responses) Cells can regulate activities – Cells control DNA synthesis and cell division – Cells make specific proteins only when needed Cells all contain the following structures: – Plasma membrane - separates the cell from the external environment – Cytoplasm - fluid-filled cell interior – Nuclear material - genetic information stored as DNA 34 Different Types of Cells Though all organisms are made up of cells, they aren’t all made up of the same types of cells. For our purposes, we’re going to examine three major categories of cell: – Bacteria – Plant – Animal The cells we’ll be examining are generalized – they are a “typical” bacterial, plant, and animal cell. In reality, there is a lot of specialization for particular purposes. 35 Features of Prokaryotic Cells Capsule - outer sticky protective layer Cell Wall - rigid structure which helps the bacterium maintain its shape – this is not the same as the cell wall of a plant cell Plasma membrane - separates the cell from the environment Mesosome - infolding of plasma membrane to aid in compartmentalization Nucleoid - region where DNA is found loose within the cell Cytoplasm – – – – semi-fluid cell interior no membrane-bound organelles location for metabolic enzymes location of ribosomes for protein synthesis Flagella (singular flagellum) - One or many threadlike motile structures (locomotion) Pili (singular, pilus) - small hairlike projections emerging from the outside cell surface, assist bacteria in attaching to other cells and surfaces, specialized pili are used for conjugation, during which two bacteria exchange fragments of DNA. 36 Prokaryote Cell Diagram 37 Features Common to Plant and Animal Cells Plasma Membrane - All living cells have a plasma membrane that encloses their contents. In prokaryotes and plants, the membrane is the inner layer of protection surrounded by a rigid cell wall. These membranes also regulate the passage of molecules in and out of the cells. Nucleus - The nucleus is a highly specialized organelle that serves as the information processing and administrative center of the cell. This organelle has two major functions: it stores the cell's hereditary material, or DNA, and it coordinates the cell's activities, which include growth, intermediary metabolism, protein synthesis, and reproduction (cell division). Endoplasmic Reticulum - The endoplasmic reticulum is a network of sacs that manufactures, processes, and transports chemical compounds for use inside and outside of the cell. It is connected to the double-layered nuclear envelope, providing a pipeline between the nucleus and the cytoplasm. In plants, the endoplasmic reticulum also connects between cells via the plasmodesmata. Golgi Apparatus - The Golgi apparatus is the distribution and shipping department for the cell's chemical products. It modifies proteins and fats built in the endoplasmic reticulum and prepares them for export as outside of the cell. Microfilaments - Microfilaments are solid rods made of proteins. These filaments are an important part of the cytoskeleton. Microtubules - These straight, hollow cylinders are found throughout the cytoplasm of all eukaryotic cells and carry out a variety of functions, ranging from transport to structural support. Mitochondria - Mitochondria are oblong shaped organelles found in the cytoplasm of all eukaryotic cells. They release stored chemical energy in a process called cellular respiration. Ribosomes - All living cells contain ribosomes, which may be found either along the rough endoplasmic reticulum or floating loose in the cytoplasm. 38 Unique Features of Animal Cells Centrioles - Centrioles are self-replicating organelles made up of nine bundles of microtubules and are found only in animal cells. They appear to help in organizing cell division, but aren't essential to the process. Cilia and Flagella - For single-celled eukaryotes, cilia and flagella are essential for the locomotion of individual organisms. In multicellular organisms, cilia function to move fluid or materials past an immobile cell as well as moving a cell or group of cells. Lysosomes - The main function of these microbodies is digestion. Lysosomes break down cellular waste products and debris from outside the cell into simple compounds, which are transferred to the cytoplasm as new cellbuilding materials. Vacuoles – Animal cells may have several small vacuoles used for storage and transport of materials. 39 Animal Cell Diagram 40 Another Animal Cell Diagram 41 Unique Features of Plant Cells Cell Wall - Like their prokaryotic ancestors, plant cells have a rigid wall surrounding the plasma membrane. It is a far more complex structure, however, and serves a variety of functions, from protecting the cell to regulating the life cycle of the plant organism. Chloroplasts - The most important characteristic of plants is their ability to photosynthesize, in effect, to make their own food by converting light energy into chemical energy. This process is carried out in specialized organelles called chloroplasts. Plasmodesmata - Plasmodesmata are small tubes that connect plant cells to each other, providing living bridges between cells. Vacuole - Each plant cell has a large, single vacuole that stores compounds, helps in plant growth, and plays an important structural role for the plant. 42 Plant Cell Diagram 43 Another Plant Cell Diagram 44 What is DNA and Why is it Important? DNA stands for deoxyribonucleic acid. DNA is found in all living organisms, including most cells in our bodies. Specifically, whenever a cell has a nucleus, it will have DNA. Mitochondrea and chloroplasts also have their own DNA. DNA is organized into chromosomes. Different organisms have different numbers of chromosomes – humans have 46. DNA contains the instructions for how an organism looks and acts – the complete makeup of an organism is stored within its DNA. DNA is passed from parent organism to child organism in a process known as inheritance. DNA is sometimes also called “the genetic code” because information is stored in DNA molecules using a chemical code. 45 Uniqueness of DNA Every organism’s DNA is unique, except for identical twins. The DNA of similar organisms will be similar, but not identical. DNA has been used by law enforcement to identify blood and hair as belonging to a particular person. DNA evidence is now widely accepted in courts. Scientists hope that by understanding DNA, they may be able to find cures to some inherited diseases. 46 A DNA Molecule DNA has a very unique shape called a “double helix”… though students tend to think of it as a spiral staircase. Unravelled, the structure of DNA looks like a ladder. 47 Structure of DNA The two sides of the ladder are made of sugar and phosphate molecules. The sugar in DNA is deoxyribose, which is where the molecule gets its name. The rungs of the ladder are the most important because they give the cell its information. Each rung is made of two nucleotide bases joined together. There are four possible nucleotide bases in DNA. – – – – These bases pair up to form the rungs of the DNA molecule: – – adenine (A) guanine (G) cytosine (C) thymine (T) A always joins to T C always joins to G A base pair refers to either a pair of A and T or a pair of G and C. A nucleotide refers to one base plus the phosphate and sugar it is attached to. 48 Diagram of DNA Molecule 49 Another Diagram of DNA 50 Molecular Diagram of DNA 51 Nucleotide Bases 52 DNA Replication DNA is shaped as a double helix for a reason. The double-stranded DNA molecule has the unique ability that it can make exact copies of itself, or self-replicate. When more is required by an organism (such as during reproduction or cell growth) the hydrogen bonds between the nucleotide bases break and the two single strands of DNA separate. New nucleotide bases attach to the two original strands, forming two identical copies. This is known as replication. 53 DNA Replication Diagram 54 Unwound DNA Strand 55 Cellular Respiration Cellular respiration is the process by which the chemical energy of "food" molecules is released and partially captured in the form of ATP. Carbohydrates, fats, and proteins can all be used as fuels in cellular respiration, but glucose is most commonly used as an example to examine the reactions and pathways involved. Cellular respiration takes place in the mitochondrea of cells. 56 Chemical Reaction for Cellular Respiration Reactants: glucose (or another food source), oxygen Products: carbon dioxide, water, and energy in the form of ATP. Reaction Glucose Oxygen Carbon dioxide Water Energy 57 Adenosine Triphosphate ENERGY STORED HERE IS USED FOR CELLULAR WORK 58 Goal of Cellular Respiration = Production of ATP Cells carry out the cellular respiration in order to produce ATP. ATP stands for adenosine triphosphate. ATP is an energy carrier. Energy is stored in an ATP molecule in the third phosphate bond (called a highenergy bond). Every time you move a muscle, think, breathe, replicate your DNA, every time your heart beats - you use ATP to do this work. 59 ATP as an Energy Carrier 60 Steps in Cellular Respiration We can divide cellular respiration into three metabolic processes: glycolysis, the Krebs cycle, and the electron transport chain. Each of these occurs in a specific region of the cell. – Glycolysis occurs in the cytosol. – The Krebs cycle takes place in the matrix of the mitochondria (eukaryotes) or in the cytosol (prokaryotes) – The electon transport chain is carried out on the inner mitochondrial membrane (eukaryotes) or along the inner cell membrane (prokaryotes). 61 Glycolysis In glycolysis, the 6-carbon sugar, glucose, is broken down into two molecules of a 3carbon molecule called pyruvate. This change is accompanied by a net gain of 2 ATP molecules and 2 NADH molecules. 62 Krebs Cycle The Krebs cycle occurs in the mitochondrial matrix and generates a pool of chemical energy (ATP, NADH, and FADH2) from the oxidation of pyruvate, the end product of glycolysis. Pyruvate is transported into the mitochondria and loses carbon dioxide to form acetyl-CoA, a 2-carbon molecule. When acetyl-CoA is oxidized to carbon dioxide in the Krebs cycle, chemical energy is released and captured in the form of NADH, FADH2, and ATP. 63 Electron Transport Chain Transfers energy from NADH and FADH2 to ATP. As electrons are passed from one compound to the next in the chain, their energy is harvested and stored by forming ATP. For each molecule of NADH which puts its two electrons in, approximately three molecules of ATP are formed, and for each molecule of FADH2, about two molecules of ATP are formed. 64 Total Energy Production Glycolysis – – Formation of Acetyl CoA – 2 NADH (= 6 ATP) Krebs Cycle – – – 2 ATP 2 NADH (= 4 ATP, these are converted to ATP in the mitochondria during cellular respiration) 6 NADH (= 18 ATP) 2 FADH2 (= 4 ATP) 2 ATP Overall = 36 ATP (this varies somewhat from cell to cell) 65 Overview Diagram of Cellular Respiration 66 Another Overview 67 Mitosis – Cell Division Like many things, cells wear out and die. Therefore it is essential that organisms be able to produce new cells, both to replace those that die, and for reproduction and growth. Cell division occurs rapidly in living organisms. For example, in an adult human, millions of cells divide each second to maintain homeostasis. If cells are created by other cells, how exactly does this happen? The answer is mitosis, the process by which a cell: 1. 2. Makes a complete copy of its DNA, and Splits in half. Mitosis is essential for the creation of new cells in all organisms. 68 Stages of Mitosis Mitosis consists of four stages: – – – – Prophase Metaphase Anaphase Telophase Immediately after the completion of telophase, cytokenesis is initiated to end cell division by literally separating the cell in two. When a cell is not undergoing mitosis, it is said to be in interphase. 69 Interphase Before starting to divide, a cell is at the interphase stage. Chromosomes are not visible . Just before the visible stages of cell division begin, DNA is replicated, nuclear proteins are synthesised, new ribosomes are made and mitochondria and centrioles divide. The proteins which later make up the spindle are also made, even though the spindle does not yet form. As a lot of energy is used in division, the mitochondria show high levels of activity at this stage. 70 Mitosis - Prophase The beginning of mitosis. Chromosomes, which have just been duplicated, become visible as they condense. The spindles which will move the chromosomes to opposite ends of the cell starts to form. In animal cells, the two centrioles move toward the opposite end of the cell. The nuclear envelope and nucleolus start to break up. 71 Mitosis - Metaphase Spindle becomes fully formed. Chromosomes line up in the centre of the cell. 72 Mitosis - Anaphase The chromosomes are pulled apart and move to opposite ends of the cell, along the spindle. Each half of the cell gets half of the DNA, a complete copy of the DNA in the original cell. 73 Mitosis Telophase Chromosomes at each end of the cell group together and two nuclei begin to form. The chromosomes begin to decondense again as the cytoplasm splits in two, forming two new cells. At the end of telophase, cytokenesis takes place and we have two separate cells. 74 Summary of Mitosis Prophase: • • • • Chromosomes condense Nuclear envelope disappears Centrioles move to opposite sides of the cell Spindle forms and attaches to centromeres on the chromosomes Metaphase • Chromosomes lined up on equator of spindle. • Centrioles at opposite ends of cell. Anaphase • Chromosomes pulled to opposite poles by the spindle Telophase • Chromosomes de-condense • Nuclear envelopes reappear • Cytokinesis: the cytoplasm is divided into 2 cells 75 Overall Diagram of Mitosis 76 Overall Diagram of Mitosis (2) 77 Mitosis in Plants 78 The Cell Cycle Cells that are growing and dividing go through a repeating series of events called the cell division cycle (or cell cycle). During the first phase (G1), the cell grows and prepares for DNA replication. DNA replication occurs in the S phase. Further growth takes place in the G2 phase Finally mitosis occurs in the M phase. Cells can exit the cell cycle and cease division either permanently or temporarily, entering what is known as the G0 phase. 79 Cell Cycle Diagram 80 Protein Synthesis Synthesis = putting together = creation. Proteins are created from individual amino acids. This takes place in the ribosomes of cells, located along the rough endoplasmic reticulum and in the cytoplasm. 81 How a Cell Knows What Protein to Make and How The instructions for making all the proteins needed by a cell are contained in the cell’s DNA, in the nucleus of the cell. This poses two problems: – DNA never leaves the nucleus (except for mitosis), so we need a way to get the information from the nucleus to the ribosomes. – DNA is coded in nucleotide bases, proteins are made up of amino acids. We need some way to convert the DNA code into the proper series of amino acids. Both of these problems are solved by RNA. 82 RNA Ribonucleic Acid Different from DNA in a few key ways: – The base Thymine is replaced by Uracil. – Uracil pairs with Adenine in RNA – Single strand instead of double helix. – Sugar is ribose instead of deoxyribose. But it does the same job – carries the series of nucleotide bases that comprise the genetic code. Two types: messenger RNA (mRNA) and transfer RNA (tRNA). 83 Molecules Present in DNA vs. RNA 84 Protein Synthesis Part 1 - Transcription Cell receives a message to make a certain quantity of a protein. The portion of the DNA double helix that contains the instructions for how that protein is made unravels. RNA nucleotides (which are floating around the cell) attach to one of the exposed DNA strands and form a molecule of messenger RNA. Multiple copies of messenger RNA are made. These mRNA molecules leave the nucleus and travel to the ribosomes that will make the protein. 85 Protein Synthesis Part 2 - Translation A molecule of mRNA binds with the ribosome so that the RNA can be read (decoded). The RNA is read in units of 3 nucleotide bases. A unit of 3 bases of mRNA is called a codon. Each codon stands for a particular amino acid. When the ribosome reads a codon of RNA, the corresponding amino acid is activated by an enzyme. A transfer RNA molecule attaches to the amino acid and brings it to the ribosome. Enzymes recognize unique features on every different tRNA molecule and will only join the correct amino acid to the correct tRNA. The transfer RNA molecule has a series of three nucleotide bases at one end and a binding site for the amino acid at the other. The three nucleotide bases on the tRNA molecule will be the opposite of the ones in the mRNA strand, and are therefore called an anticodon. The tRNA anticodon matches with mRNA codon to bring the amino acid into the proper position. The ribosome goes on to the next codon, and the next amino acid is brought into position. The first tRNA molecule releases its amino acid, and a peptide bond forms between the two amino acids. This occurs until the ribosome reads a “stop codon” on the mRNA. At that point, the protein is released, and the mRNA and tRNA break down so their nucleotides can be reused. 86 Stop codons are UAA, UAG, and UGA. Transfer RNA 87 Diagram of Protein Synthesis 88 Another Diagram of Protein Synthesis 89 Transcription and Translation Review Transcription – RNA is made from DNA. – Occurs in the nucleus of the cell. – Result is creation of a strand of messenger RNA. Translation – Proteins are made from the message on the messenger RNA. – Occurs at the ribosomes. – Molecules of transfer RNA bring the individual amino acids indicated to the ribosome, where they are joined together. – Result is creation of a protein. – Messenger and transfer RNA are broken down for re-use. 90 The Genetic Code mRNA to Amino Acid 91 Review of Unit 1 At the end of the unit, you should be able to: Categorize organisms into one of the five kingdoms based on basic characteristics. Differentiate between plant, animal, and bacterial cells, and identify features of these cells on a diagram. Describe the processes of protein synthesis, cellular respiration, DNA replication, and mitosis. Differentiate between prokaryote/eukaryote, DNA/RNA, transcription/translation, heterotroph/autotroph, and codon/anticodon (to name a few). Assemble a working model of a 1914 Model T automobile from spare parts in your shop while blindfolded. (Okay, I was kidding on that one, but you should be able to do the rest…) 92