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• • • • Alterations to Mendel Incomplete or partial dominance Codominance Multiple alleles and Lethal alleles Gene interactions & multiple genes – Epistasis and complementation • • • • • Effect of environment Extranuclear inheritance Sex-linked, sex-limited, & sex-influenced Sex determination and Gene dosage Polygenics 1 Gene dosage • It matters how many copies of genes there are. – Snapdragons: heterozygous flowers are pink. – Multiple histone genes. – Too many of some genes is deleterious. • 3 copies of chromosome 21 = Down Syndrome • What about sex chromosomes? XX vs. XY – Y chromosomes are missing most of genes X has. – So, if 1 set of genes on the X is good for males, is two sets (2 X chromosomes) bad for females? 2 3 Dosage compensation: Barr, Ohno, and Lyon • Barr noticed that in the nucleus of females, but not males, a darkly staining body is visible. • Ohno hypothesized that this was an inactivated X chromosome in females so that there would only be 1 functional copy of genes, as in males. • Inactivated X is called a Barr body. • Individuals with incorrect numbers of sex chromosomes have appropriate number of Barr bodies. – E.g. XXX females have 2 Barr bodies Lyon Hypothesis 4 • X chromosome inactivation takes place early in development. • In placental mammals, it can be either X chromosome. – All the descendents of that cell have the same X chromosome inactivated. – Results in a mosaic, patches of tissue with different lineages. Seen with X-linked traits. • Human females: anhidrotic epidermal dysplasia, no sweat glands; female has patches of skin w/o sweat glands, cells descended from a cell in which the X chromosome with the normal gene was inactivated. • G6PD alleles; Patches of color blindness Descent of cells: 5 How mosaics are made. Events during development. Two homologous chromosomes, blue & red. Black indicates inactivation = Barr body Formation of Barr bodies-2 Classic example: the calico cat. One X chromosome codes for orange fur, the other for black. Cat shows characteristic mosaic patterns caused by one or the other X chromosome being inactivated. White fur results from the effect of another gene. http://www.petstreetmall.com/merchant/Embroidery/Cat/CalicoCatBody.gif.jpe 6 Molecular basis of Barr body formation 7 • Xic is a region on the X near the centromere. • Xic region includes a region called Xist (X inactivation specific transcript) – This area is transcribed, but RNA isn’t used to make a protein; it binds to the DNA of the rest of the X chromosome. – This promotes molecular changes that inactivate the chromosome including extensive methylation (except for XIC) and condensation of DNA (into smaller space). • In the OTHER X chromosome, Xic region is methylated so it will NOT be active. 8 Occurs in a “window” of time during development http://bioweb.wku.edu/courses/biol566/Images/PlathF2.jpg Active and inactive regions Red: active genes. Black: inactive Xic is responsible for this process; if moved to an autosome, that chromosome will be inactivated. Besides XIC, a few other genes on the chromosome remain active. Logically, they are genes also found in the pseudoautosomal region of the Y chromosome. 9 Polygenic Traits 10 • Polygenic traits: different from multiple genes – Seems like it should be the same, but no – Also called Quantitative traits – Polygenic traits are different in AMOUNT not TYPE • Range of heights vs. purple/white • Traits studied by Mendel: “discrete” – Polygenic traits usually show continuous variation • Height, weight, eye color, etc. – Number of phenotypic classes depends on how much you subdivide. Polygenic Traits-2 11 • Some polygenic traits are”meristic” – Must be integers; meristic traits must be counted • Number of kernels of corn can’t be continuous • Offspring of crosses appear blended – Still fit into Mendel’s notion of unit factors – Multiple genes, and their alleles, are additive or not • The total number of additive alleles determines the phenotype. • Usually studied using statistics – Distribution of traits follows bell curve – Mean, standard deviation, and variance Quantitative traits are Mendelian • Example: red and white wheat. – Red results from an additive allele, “white” is the absence of of additive alleles. – When the F1 plants are crossed, an apparently continuous range of phenotypes is produced. Including a “white” which is 1/16 of total. Closer view: 1:4:6:4:1 12 13 AB Ab aB ab AB AABB AABb AaBB AaBb Ab AABb Aabb AaBb aaBb aB AaBB AaBb aaBB aaBb ab AaBb Aabb aaBb aabb Five phenotypic classes: 4+ alleles, 3+ alleles, 2+ alleles, 1+ allele, none Summary of polygenic idea 14 Continuous variation 15 • Traits usually quantifiable (weighing, etc.) • Two or more genes contribute to phenotype in an additive way. – Individual allele either adds to phenotype or doesn’t • Effect of each allele is small (but adds up) – Lots of incremental effects create wide range of phenotypic variation, • Study requires large numbers of individuals Continuous variation-2 Variation appears continuous because these traits often affected by the environment. note bell curve. 16