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BIOCHEMISTRY AND ITS ROLE IN DISEASE DIAGNOSIS Dr. A. K. Dwivedi INTRODUCTION TO BIOCHEMISTRY BIOCHEMISTRY deals with the chemical prosess taking place in all living organisms from smallest viruses to bacteria to largest living matter. It is defined as , THE study of chemical composition of living matter and chemical changes that occur in it during life process. HSTORY: First intrdused by CARL NEWBERG,a germen scientist in1903. Concept was given by:Karl william scheel INCLUDES study of Carbohydrates Protiens,aminoacids,peptides Lipids Enzymes Vitamins etc. INTRODUCTION TO ENZYMES Enzymes are biological catalysts responsible for supporting almost all of the chemical reactions that maintain animal homeostasis. Because of their role in maintaining life processes, the assay and pharmacological regulation of enzymes have become key elements in clinical diagnosis and therapeutics. The macromolecular components of almost all enzymes are composed of protein, except for a class of RNA modifying catalysts known as ribozymes. Ribozymes are molecules of ribonucleic acid that catalyze reactions on the phosphodiester bond of other RNAs. Enzymes are found in all tissues and fluids of the body. Intracellular enzymes catalyze the reactions of metabolic pathways. Plasma membrane enzymes regulate catalysis within cells in response to extracellular signals, and enzymes of the circulatory system are responsible for regulating the clotting of blood Almost every significant life process is dependent on enzyme activity. Enzyme Classifications Currently enzymes are grouped into six functional classes by the International Union of Biochemists (I.U.B.). Number Classification Biochemical Properties 1 Oxidoreductases Act on many chemical groupings to add or remove hydrogen atoms. 2 Transferases Transfer functional groups between donor and acceptor molecules. Kinases are specialized transferases that regulate metabolism by transferring phosphate from ATP to other molecules. 3 Hydrolases Add water across a bond, hydrolyzing it. 4 Lyases Add water, ammonia or carbon dioxide across double bonds, or remove these elements to produce double bonds. 5 Isomerases Carry out many kinds of isomerization: L to D isomerizations, mutase reactions (shifts of chemical groups) and others. Ligases 6 Catalyze reactions in which two chemical groups are joined (or ligated) with the use of energy from ATP. Enzymes are also classified on the basis of their composition. Enzymes composed wholly of protein are known as simple enzymes in contrast to complex enzymes, which are composed of protein plus a relatively small organic molecule. Complex enzymes are also known as holoenzymes. In this terminology the protein component is known as the apoenzyme, while the nonprotein component is known as the coenzyme Many prosthetic groups and coenzymes are water-soluble derivatives of vitamins. It should be noted that the main clinical symptoms of dietary vitamin insufficiency generally arise from the malfunction of enzymes, which lack sufficient cofactors derived from vitamins to maintain homeostasis. Enzymes that require a metal in their composition are known as metalloenzymes Introduction - Enzyme Characteristics: The basic mechanism by which enzymes catalyze chemical reactions begins with the binding of the substrate (or substrates) to the active site on the enzyme. The active site is the specific region of the enzyme which combines with the substrate. The binding of the substrate to the enzyme causes changes in the distribution of electrons in the chemical bonds of the substrate and ultimately causes the reactions that lead to the formation of products. The products are released from the enzyme surface to regenerate the enzyme for another reaction cycle. The active site has a unique geometric shape that is complementary to the geometric shape of a substrate molecule, similar to the fit of puzzle pieces. This means that enzymes specifically react with only one or a very few similar compounds. Lock and Key Theory: The specific action of an enzyme with a single substrate can be explained using a Lock and Key analogy first postulated in 1894 by Emil Fischer. In this analogy, the lock is the enzyme and the key is the substrate. Only the correctly sized key (substrate) fits into the key hole (active site) of the lock (enzyme). Smaller keys, larger keys, or incorrectly positioned teeth on keys (incorrectly shaped or sized substrate molecules) do not fit into the lock (enzyme). Only the correctly shaped key opens a particular lock. This is illustrated in graphic on the left. QUES: Using a diagram and in your own words, describe the various lock and key theory of enzyme action in relation to a correct and incorrect substrate. Induced Fit Theory: Not all experimental evidence can be adequately explained by using the so-called rigid enzyme model assumed by the lock and key theory. For this reason, a modification called the induced-fit theory has been proposed. The induced-fit theory assumes that the substrate play a role in determining the final shape of the enzyme an that the enzyme is partially flexible. This explains why certain compounds can bind to the enzyme but do not react because the enzyme has been distorted too muc Other molecules may be too small to induce the prope alignment and therefore cannot react. Only the proper substrate is capable of inducing the Induced Fit Theory: Not all experimental evidence can be adequately explained by using the socalled rigid enzyme model assumed by the lock and key theory. For this reason, a modification called the induced-fit theory has been proposed. The induced-fit theory assumes that the substrate plays a role in determining the final shape of the enzyme and that the enzyme is partially flexible. This explains why certain compounds can bind to the enzyme but do not react because the enzyme has been distorted too much. Other molecules may be too small to induce the proper alignment and therefore cannot react. Only the proper substrate is capable of inducing the proper alignment of the active site. In the graphic on the left, the substrate is represented by the magenta molecule, the enzyme protein is represented by the green and cyan colors. The cyan colored protein is used to more sharply define the active site. The protein chains are flexible and fit around the substrate. Enzymes in the Diagnosis of Pathology The measurement of the serum levels of numerous enzymes has been shown to be of diagnostic significance. This is because the presence of these enzymes in the serum indicates that tissue or cellular damage has occurred resulting in the release of intracellular components into the blood. Hence, when a physician indicates that he/she is going to assay for liver enzymes, the purpose is to ascertain the potential for liver cell damage. Commonly assayed enzymes are the amino transferases: alanine transaminase, ALT (sometimes still referred to as serum glutamate-pyruvate aminotransferase, SGPT) and aspartate aminotransferase, AST (also referred to as serum glutamate-oxaloacetate aminotransferase, SGOT); lactate dehydrogenase, LDH; creatine kinase, CK (also called creatine phosphokinase, CPK); gamma-glutamyl transpeptidase, GGT. Other enzymes are assayed under a variety of different clinical situations but they will not be covered here. The typical liver enzymes measured are AST and ALT. ALT is particularly diagnostic of liver involvement as this enzyme is found predominantly in hepatocytes. When assaying for both ALT and AST the ratio of the level of these two enzymes can also be diagnostic. Normally in liver disease or damage that is not of viral origin the ratio of ALT/AST is less than 1. However, with viral hepatitis the ALT/AST ratio will be greater than 1. Measurement of AST is useful not only for liver involvement but also for heart disease or damage. The level of AST elevation in the serum is directly proportional to the number of cells involved as well as on the time following injury that the AST assay was performed. Following injury, levels of AST rise within 8 hours and peak 24-36 hours later. Within 3-7 days the level of AST should return to pre-injury levels, provided a continuous insult is not present or further injury occurs. Although measurement of AST is not, in and of itself, diagnostic for myocardial infarction, taken together with LDH and CK measurements (see below) the level of AST is useful for timing of the infarct. The measurement of LDH is especially diagnostic for myocardial infarction because this enzyme exist in 5 closely related, but slightly different forms (isozymes). The 5 types and their normal distribution and levels in non-disease/injury are listed below. LDH 1 - Found in heart and red-blood cells and is 17% - 27% of the normal serum total. LDH 2 - Found in heart and red-blood cells and is 27% - 37% of the normal serum total. LDH 3 - Found in a variety of organs and is 18% - 25% of the normal serum total. LDH 4 - Found in a variety of organs and is 3% - 8% of the normal serum total. LDH 5 - Found in liver and skeletal muscle and is 0% - 5% of the normal serum total. Following a myocardial infarct the serum levels of LDH rise within 24-48 hours reaching a peak by 2-3 days and return to normal in 5-10 days. Especially diagnostic is a comparison of the LDH-1/LDH-2 ratio. Normally, this ration is less than 1. A reversal of this ration is referred to as a "flipped LDH.". Following an acute myocardial infart the flipped LDH ratio will appear in 12-24 hours and is definitely present by 48 hours in over 80% of patients. Also important is the fact that persons suffering chest pain due to angina only will not likely have altered LDH levels. CPK is found primarily in heart and skeletal muscle as well as the brain. Therefore, measurement of serum CPK levels is a good diagnostic for injury to these tissues. The levels of CPK will rise within 6 hours of injury and peak by around 18 hours. If the injury is not persistent the level of CK returns to normal within 2-3 days. Seminar Presentation On PROTEINS BY ANKUSH VANI INTRODUCTION The proteins are complex molecules built mainly from a-amino acid linked together in chains. The linkage between the amino acids is called peptide bond; molecules built up from many (up to 100) amino acids are called polypeptides. Proteins consist of several polypeptide chains, crosslinkaged between specific amino acid units. Chains containing 2-10 amino acids are called peptides. Amino Acids The principal amino acids obtained by breakdown of proteins are: Neutral amino acids - they contain one NH2 (basic) group and one COOH (acidic) group which mutually neutralize each other. Types: Amino acids with unsubstantiated C chains: glycine, almandine, valine, leucine, isolucine. (ii) Hydroxyl-substituted amino acids: serine, threonine. (iii) Sulphur containing amino acids: cytosine, cystine (oxidative product of cytosine), methionine. (iv) Aromatic amino acids, derived from almandine: phenylalanine, tyrosine,thyroxine, triiodothyro-nine 2. Acidic amino acids - amino acids with acidic side chain: aspartic acid, asparagine, glutamic acid, glutamine. 3. Basic amino acids - amino acids with basic side chain: arginine, lysine, histidine. 4. Imino acids - contains imino group but no amino group: proline, hydroxyproline. C. Digestion and absorption of proteins. Digestion of proteins in the stomach pepsin is the most important proteolytic enzyme of gastric juiceOptimum pH for the activite of pepsin is 2 to 3 and it is completely inactive at a pH above 5 . The hydrochloric acid in the gastric juice provides the ideal pH for the activity of pepsin . Pepsin acts on proteins and breaks them down into proteoses , peptones and large polypestides . So , the proteins reach the duodenum in these forms along with chyme. Proteins Pepsin (Gastric Juice) Proteoses Peptones Large polypeptides Trypsin Chymotrypsin (Endopeptidases in Pancreatic juice) Dipeptides Tripeptides Carboxy peptidase (Exopeptidase in pancreatic juice Polypeptides Peptidases (Succus entericus) Amino acids DIGESTION OF PROTEINS IN THE SMALL INTESTINE Most of the p[roteins are digested in the doudenum and jejunum by the proteolytic enzymes of the pancreatic juice and succus entericus. Pancreatic juice contains trypsin, chymotrypsin and carboxy peptidases. Trypsin and chymotrypsin are called endopeptidases as these two enzymes break the interior bonds of the protein molecules. Both the enzymes act on proteoses and peptones split then into dipeptide and tripeptide molecules are absorbed directly into the epithelial cells of the mucosa of the small intestine. Carboxypeptidase from pancreatic juice breaks the terminal bonds of the protein molecules. So, it is called exopeptidase. By the activity of carboxypeptidase, the dipeptides, tripeptides and the polypeptides are converted into amino acids. The last digestion of the proteins is by proteolytic enzymes present in the succus entericus. It contains dipeptidases, tripeptidases and aminopolypeptidases. These enzymes act on large polypeptides and some of the left over dipeptides and tripeptides and convert these proteins into the final stage of single amino acids, which can be easily absorbed. Pancreatic juice contains two more enzymes namely, collagenase and elastease. Collagenase acts on collagen and elastase acts on elastic fibers. ABSORPTION OF PROTEINS The proteins are absorbed in the form of amino acids from small intestine. The levoamino acids are actively absorbed by means of sodium co-transport, whereas, the dextroamino acids are absorbed by means of facilitated diffusion. The absorption of amino acids is faster in duodenum and jejunum and slower in ileum. D. Amino Acid Pool:Most of the tissue proteins (structural as well as functional protein) are continuously undergoing disintegration to release amino acids. The amino acids derived from food (exogenous protein) and those derived from the tissues break down (endogenous protein) enter the circulation forming general ammo acid pool. It represents an availability of amino acid building units. From this common amino acid pool, amino acids are taken up by the cells, if a cell takes up as much amino acid as it loses, it is in a state of dynamic equilibrium; if the loss is greater, the cell degenerates; if the gain is greater, the cell grows. The proteins of the body are in a state of dynamic equilibrium i.e. a balance between simultaneous breakdown and synthesis. The endogenous protein turnover rate is about 80-100 gm/day being greatest in intestinal mucosa, followed by kidney, liver, brain and muscle in that order. E. Essential Amino acids These are the amino acids needed for replacement and growth, but which cannot be synthesized by the body in amounts sufficient to fulfil its normal requirements. The rest of the amino acids are the non-essential amino acids and can be synthesized in the body. It has been found that the following amino acids are indispensable for human adults under normal conditions: valine, leucine, isoleucine, threonine, methionine, phenylalanine, tryptophan, lysine, histidine and arginine . F. Specific Metabolic Roles of Amino Acids 1. 2. 3. 4. 5. Amino acids are the building units of all the tissue proteins including the enzymes and many of the hormones. Glycine is a fundamental building unit, and an inhibitory transmitter in the spinal cord. Arginine is responsible for urea formation and helps in creatine synthesis. Histidine is the precursor of histamine. Phenylalanine can be irreversibly converted to tyrosine which is the precursor for thyroxine, epinephrine, nor-epinephrine and melanin pigment. 6. Tryptophan is essential for the formation of 5 HT (serotonin). 7. Methionine, cysteine and cystine are the only important source of sulphur and are used for the forjnation of organic sulphates or taurine. G. Urinary Sulphates The sulphur compounds of urine are derived mainly from the sulphur containing amino acids (methionine, cysteine and cystine) of the dietary and tissue proteins. The sulphur is excerted in urine in the following forms: 1. Inorganic sulphate : Sulphur containing amino acids of the amino acid pool that are not used in protein synthesis are completely oxidised and the sulphur as sulphate ions (SO42~) are excreted in urine, with an equivalent amount of cations (Na+, K+, NH4T). The normal range of urinary output is 0.3-3 gm of sulphate ions /day. 2. Ethereal sulphate : The urine contains small amounts of organic sulphate esters, R-OSO3H (ethereal sulphates), where R is the aromatic radicals. These are the forms in which many phenols (oestrogen, steroids, indoles and drugs like aspirin) are detoxicated and excreted in urine. The conjugation of the phenol with sulphate from amino acids takes place in the liver 3. Neutral sulphur e.g. cystine, mercaptans are found in the urine in traces. METABOLISM OF AMINO ACIDS [A] Metabolism of amino acids involve the following reactions: 1. Oxidative deamination : Amino acids which are not used as such undergo 'oxidative deamination'/ primarily in the liver. The overall reaction is the transformation of an amino acid R.CH(NH2).COOH, to the corresponding keto acid, R.CO.COOH. This involves an oxidation (or dehydrogenation) to give a-imino acid, followed by hydrolysis liberating 'ammonia'. CH3.CH(NH2) COOH + NAD Alanine coenzyme (H carrier) amino acid oxidase CH3.C(:NH)COOH + NAD.2H α-imino acid reduced coenzyme CH,C (:NH) COOH + H,O CH2.CO.COOH+NH3 pyruvic acid The ammonia thus formed is then used up in the synthesis of other amino acids or excreted as urea 2. Transamination It is the process in which deamination of an amino acid to corresponding ketoacid is coupled with the simultaneous amination of another ketoacid to an amino acid e.g. transaminase Alanine + ot-keto-glutaric acid pyruvic acid + elutamic acid (present in the circulation) Body protein Diet Inert protein hair etc. transamination Urin excretion Amino acid pool Amination Deamination Creatine Purines Pyrimidines NH4+ Urea Hormones neurotransmitters Amino acid metabolism Common mettabolic pool 2. Transamination is 'reversible'. Thus plays an important role in both the breakdown of amino-acids and their synthesis from nonprotein sources; for example, from ketoacids of the citric acid cycle. 3. Amination of non-nitrogenous residues Amino-acids from the amino acid pool are continually being broken down by deamination, and the processs of direct amination or transamination are used to resynthesize some of these amino-acids. Products of deamination formed at one site can be reaminated elsewhere and so re-enter the 'amino acid pool'. 4. Ammonia Ammonia formed by the kidney tubule cells, mainly from glutamine, diffuses into the lumen of the tubules and act as a hydrogen ion acceptor. [B] Urea Formation 1. The excess of ammonia which is formed by deamination and not used for reamination is converted into urea. Ammonia is very toxic to cells whereas 'urea' is harmless even in very high concentrations. The liver is the only site of urea formation, and that urea once formed is not destroyed in the body. 2. Urea formation in the liver consists of the union of 2 moles of NH3 and one mole of CO2 with the elimination of H2O. This takes place directly through the Krebs urea cycle in which 'non-protein' amino acid ornithine acts as a catalyst to form citrulline (Fig. 8.4.2). This reacts with a second mole of NH, to give arginine; the amidine group of arginine is split off as urea by hydrolytic enzyme 'arginase', and ornithine is regenerated to continue the cycle. [C] Fate of non-nitrogenous residues from amino acids The non-nitrogenous residues remaining .after deamination enter the 'common metabolic pool' and are either completely catabolised to CO., or are built up into other body constituents. In general, the essential amino acids are 'glucogenic' i.e. they give rise to compounds that can readily be converted to glucose; all the non-essential amino acids are 'ketogenic' i.e. they give rise to ketone bodies. Applied Aspect In certain condition oxidative mechanisms of amino acid are dearranged by the blockage at different point . This results in the urinari excretion of intermediate metabalies –For example:1. Phenylketonuria : It is a form of idiocy in which there is an inability to convert phenylalamine to tyrosine therefore phenylalamine accumulates, and phenyl-pyruvic acid (the deamination product of phenylalanine) appears in the urine. 2. Alcaptonuria : Here, a normal metabolite from tyrosine appears in the urine; such urine darkens considerably when alkaline is exposed to air and may turn almost black. [D] Significance of nitrogen containing constituents in urine Mixed proteins contain an average of 16% of nitrogen, almost all of which is excreted in the urine. The chief nitrogen containing waste products in urine are: urea, creatinine, creatine, ammonium ions and uric acid. A small amount of amino acids are also lost from the body through the urine. 1. Urea - Urea is formed in the liver from ammonia derived from amino-acids (a) On a normal protein intake (the 'amino acid pool' is contributed by the : ingested food), the urinary urea is mainly of food origin i.e. exogenous proteins. Within limits, the urea output varies directly with the recent protein intake. On a normal mixed diet, an adult's excretion of urea is 15-50 gm/day (= 7-23 gm of urea nitrogen). (ii) On a protein-free diet but adequate in energy content, the amino acids are contributed to the 'pool' by breakdown of tissue proteins only i.e. endogenous proteins. Amino acids from this endogenous proteins cannot be rebuilt into the proteins from which they come, because one or more of the required essential amino acid needed for the protein synthesis has been utilized elsewhere; moreover, these amino acids cannot be stored and are irreversibly broken down producing first ammonia and then urea which appears in the urine. Thus, the urinary urea on a 'protein-free diet' is wholly 'endogenous' and is approximately 4 gm of urea/day. (iii) In complete starvation tissue protein (specially muscle protein) is broken down into amino acids on a much larger scale than in (ii) above. Most of this is deaminated and the residues utilized for energy purposes and to maintain the blood sugar level. Therefore, urea excretion is on a much larger scale because tissue protein is not being used as "fuel". 2. Creatine and creatinine (i) Creatine occurs in greatest concentration in skeletal muscle, with lesser amounts in heart muscle, brain and uterus. In resting muscle, creatine exists largely as creatine phosphate (phosphocreatine), a high energy compound. This is formed by the reaction of creatine with ATP (reversible reaction). The energy of carbohydrate catabolism in muscle is initially made available as ATP which reacts with creatine to form ADP and large amounts of creatine phosphate. During exercise, the reaction is reversible, maintaining the supply of ATP (an immediate source of energy for muscle contraction). (ii) Creatine is synthesized in the liver from arginine, glycine and methio-nine. Creatine gets phosphorylated by ATP to give creatine phosphate, some of which lost to the body by a slow, spontaneous transformation to 'creatinine' is excreted in urine. (iii) Creatinuria i.e. excretion of creatine in urine. Creatine is not a normal constituent of the urine but may. appear in the following conditions: (a) In children, creatinuria may be associated with the low storage power of the muscles for creatine at an early age. (b) Pregnancy - There is a continuous creatinuria during pregnancy, which rises to a maximum of 1.5 gm/day after delivery; when it is derived from the involuting uterus. (c) Myopathies - Creatinuria occurs because of the low storage power of the muscles. (d) In any condition in which unusual breakdown of the tissues (specially muscles) occurs, e.g. in starvation (muscles substance is broken down for enerev purposes), diabetes mellitus, goitre and fever (from the increased metabolic rate). (iv) Excretion of creatinine - Creatinine is formed in the body exclusively from creatine via creatine phosphate; therefore, the urinary output of creatinine increases during exercise. 3. Ammonium ions (NH/) 4. Amino acids - traces of many amino acids and small peptides are found in normal urine; mainly they come from the breakdown of tissue protein (endogenous excretion). 5. Uric acid - This is the only end product from the metabolism of purines and nucleic acids which normally appear in the urine NUCLEIC ACID [A] General 1. Purines (i) The major purines found in nucleo-tides and nucleic acids are adenine and guanine. 'Uric acid' is the final oxidation product of all purines; intermediate oxidation products are hypoxanthine and xanthine. (ii) The diet contributes small amounts of 'free' purines to the body from meat ^extract, tea, coffee and cocoa. 2.Pyrimidines – The major pyrimidines found in nucleotides and nucleic acid are cytosine, uracil and thymine. Applied Aspect: GOUT [A] Gout is characterised by:1 Excess of uric acid in the blood. 2. In normal persons 'metabolic pool' of uric acid is 0.7-1.3 gin which increases to 2-4 gm. 3. Deposition of sodium monourate in articular and non-articular structures, producing tophi. 4. Recurring attacks of acute arthritis. These are due to deposition of microcrystals of monosodium urate in and around the structures of the affected joints. The joint most commonly affected in early stages is metatarsophalangeal joint of the great toe. [B] Types: Primary and Secondary Gout (i) Primary gout: Here, increased formation of uric acid occurs from simple carbon and nitrogen compound without intermediary incorporation into nucleic acids. (ii) Secondary gout: There is an increased breakdown of nucleic acids leading to an excess of the end-product, uric acid; it occurs in polycythaemia, chronic leukaemias and pernicious anaemia. [C] Treatment a) Acute gout - The most effective drugs are colchicine, phenylbutazone and indomethacin. They increase the renal excretion of uric acid. Chronic gout – a) Prolonged administration of drugs which increases the excretion of uric acid in the urine by decreasing tubular reabsorption of uric acid e.g. 'probenecid' and 'salicylates b) 'Allopurinol' inhibits the enzyme xanthine oxidase and thus reduces uric acid synthesis. Vitamin A vitamin is an organic compound required as a nutrient in tiny amounts by an organism. allowing supplementation of the dietary intake. History The discovery of vitamins and their structureYear of discovery Vitamin Source1909Vitamin A (Retinol)Cod liver oil1912Vitamin B1 (Thiamin)Rice bran1912Vitamin C (Ascorbic acid)Lemons1918Vitamin D (Calciferol)Cod liver oil1920Vitamin B2 (Riboflavin)Eggs1922Vitamin E (Tocopherol)Wheat germ oil, Cosmetic and Liver1926Vitamin B12 (Cyanocobalamin)Liver1929Vitamin K (Phylloquinone)Luzerne1931Vitamin B5 (Pantothenic acid)Liver1931Vitamin B7 (Biotin)Liver1934Vitamin B6 (Pyridoxine)Rice bran1936Vitamin B3 (Niacin)Liver1941Vitamin B9 (Folic acid)Liver In humans there are 13 vitamins: 4 fat-soluble (A, D, E and K) and 9 water-soluble (8 B vitamins and vitamin C). Thiamin PropertiesMolecular formulaC12H17N4OS+Molar mass265.356Melting point248-260 °C (hydrochloride salt) Thiamin or thiamine, also known as vitamin B1 and aneurine hydrochloride, is the name of a family of molecules sharing a common structural feature responsible for its activity as a vitamin. It is one of the B vitamins. Its most common form is a colorless chemical compound with a chemical formula C12H17N4OS. This form of thiamine is soluble in water, methanol, and glycerol and practically insoluble in acetone, ether, chloroform, and benzene. Another form of thiamine known as TTFD has different solubility properties and belongs to a family of molecules often referred to as fat-soluble thiamines History Thiamin was first discovered in 1910 by Umetaro Suzuki in Japan when researching how rice bran cured patients of beriberi. He named it aberic acid (later oryzanin). He did not determine its chemical composition, nor that it was an amine. It was first crystallized by Jansen and Donath in 1926 (they named it aneurin, for antineuritic vitamin). Its chemical composition and synthesis was finally reported by Robert R. Williams in 1935. Sources Yeast Oatmeal Brown rice Whole grain flour (rye or wheat) Asparagus Kale Cauliflower Potatoes Oranges Genetic diseases Genetic diseases of thiamin transport are rare but serious. Thiamin Responsive Megaloblastic Anemia with diabetes mellitus and sensorineural deafness is an autosomal recessive disorder caused by mutations in the gene a high affinity thiamine transporter. TRMA patients do not show signs of systemic thiamin deficiency, suggesting redundancy in the thiamin transport system. This has led to the discovery of a second high affinity thiamin transporter, SLC19A3. High doses The RDA in most countries is set at about 1.4 mg. However, tests on volunteers at daily doses of about 50 mg have claimed an increase in mental acuity. Riboflavin (Vitamin B2) PropertiesMolecular formulaC17H20N4O6Molar mass376.36 g/molMelting point290 °C (dec.) Riboflavin (E101), also known as vitamin B2, is an easily absorbed micronutrient with a key role in maintaining health in humans and animals. It is the central component of the cofactors FAD and FMN, and is therefore required by all flavoproteins. As such, vitamin B2 is required for a wide variety of cellular processes. Toxicity Riboflavin is not toxic when taken orally, as its low solubility keeps it from being absorbed in dangerous amounts from Although toxic doses can be administered by injection, any excess at nutritionally relevant doses is excreted in the urine imparting a bright yellow color when in large quantities. Nutrition Riboflavin deficiency Riboflavin is continuously excreted in the urine of healthy individuals, making deficiency relatively common when dietary intake is insufficient. However, riboflavin deficiency is always accompanied by deficiency of other vitamins. Clinical Uses Riboflavin has been used in several clinical and therapeutic situations. For over 30 years, riboflavin supplements have been used as part of the phototherapy treatment of neonatal jaundice. The light used to irradiate the infants breaks down not only the toxin causing the jaundice, but the naturally occurring riboflavin within the infant's blood as well. Deficiencies Deficiencies of vitamins are classified as either primary or secondary. A primary deficiency occurs when an organism does not get enough of the vitamin in its food. A secondary deficiency may be due to an underlying disorder that prevents or limits the absorption or use of the vitamin, due to a “lifestyle factor”, such as Side effects and overdose In large doses, some vitamins have documented side effects that tend to be more severe with a larger dosage. The likelihood of consuming too much of any vitamin from food is remote, but overdosing from vitamin supplementation does occur. At high enough dosages some vitamins cause side effects such as nausea, diarrhea, and vomiting. Niacin Niacin, also known as vitamin B3, is a watersoluble vitamin which prevents the deficiency disease pellagra. It is an organic compound with the molecular formula C6H5NO2. It is a derivative of pyridine, with a carboxyl group (COOH) at the 3-position. Other forms of vitamin B3 include the corresponding amide, nicotinamide ("niacinamide"), where the carboxyl group has been replaced by an amide group (CONH2), as well as more complex amides and a variety of esters. History Niacin was first described by Hugo Weidel in 1873 in his studies of nicotine. The original preparation remains useful: the oxidation of nicotine using nitric acid Niacin was extracted from livers by Conrad Elvehjem who later identified the active ingredient, then referred to as the "pellagra-preventing factor" and the "anti-blacktongue factor." When the biological significance of nicotinic acid was realized, it was thought appropriate to choose a name to dissociate it from nicotine, in order to avoid the perception that vitamins or niacin-rich food contains nicotine. Toxicity People taking pharmacological doses of niacin (1.5 6 g per day) often experience a syndrome of sideeffects that can include one or more of the following: dermatological complaints facial flushing and itching dry skin skin rashes including acanthosis nigricans gastrointestinal complaints dyspepsia (indigestion) liver toxicity fulminates hepatic failure hyperglycemia cardiac arrhythmias birth defects orthostasis Pantothenic acid Pantothenic acid, also called vitamin B5 (a B vitamin), is a water-soluble vitamin required to sustain life (essential nutrient). Pantothenic acid is needed to form coenzyme-A (CoA), and is critical in the metabolism and synthesis of carbohydrates, proteins, and fats. Sources Daily requirement Pantothenate in the form of pantethine is considered to be the more active form of the vitamin in the body, but is unstable at high temperatures or when stored for long periods, so calcium pantothenate is the more usual form of vitamin B5 when it is sold as a dietary supplement. Ten mg of calcium pantothenate is equivalent to 9.2 mg of pantothenic acid. Absorption Within most foods, pantothenic acid is in the form of CoA or acyl-carrier protein (ACP). In order for the intestinal cells to absorb this vitamin it must be converted into free pantothenic acid. Within the lumen of the intestine, CoA and ACP are degraded from the food into 4'-phosphopantetheine. . Deficiency Pantothenic acid deficiency is exceptionally rare and has not been thoroughly studied. In the few cases where deficiency has been seen (victims of starvation and limited volunteer trials), nearly all symptoms can be reversed with the return of pantothenic acid. Toxicity Toxicity of pantothenic acid is unlikely. Large doses of the vitamin, when ingested, have no reported side effects and massive doses (e.g. 10 g/day) may only yield mild intestinal distress and diarrhea at worst. There are also no adverse reactions known following parenteral or topical application of the vitamin. Pyridoxine PropertiesMolecular formulaC8H11NO3Molar mass169.18 g/molMelting point159-162 °C Pyridoxine is one of the compounds that can be called vitamin B6, along with Pyridoxal and Pyridoxamine. It differs from pyridoxamine by the substituent at the '4' position. It is often used as 'pyridoxine hydrochloride' Function in the body Pyridoxine assists in the balancing of sodium and potassium as well as promoting red blood cell production. It is linked to cardiovascular health by decreasing the formation of homocysteine. It has been suggested that Pyridoxine might help children with learning difficulties, and may also prevent dandruff, eczema, and psoriasis. In addition, pyridoxine can help balance hormonal changes in women and aid in immune system. Medicinal uses It is given to patients taking isoniazid to combat the toxic side effects of the drug. Pyridoxine is given 10-50 mg/day to patients on INH (Isoniazid) to prevent peripheral neuropathy and CNS effects that are associated with the use of isoniazid. Biotin Biotin Properties Molecular formulaC10H16N2O3SMola mass244.31 g/molSolubility in waterSoluble Biotin, also known as vitamin H or B7, has the chemical formula C10H16N2O3S (Biotin; Coenzyme R, Biopeiderm), is a water-soluble B-complex vitamin which is composed of an ureido (tetrahydroimidizalone) ring fused with a tetrahydrothiophene ring. A valeric acid substituent is attached to one of the carbon atoms of the tetrahydrothiophene ring. Sources Dietary Recommended Adequate Intake* for BiotinAgeBiotin (mcg/day)Infants0–6 months57–12 months6Children1–3 years84–8 years12Males and Females9–13 years2014-18 years2519–70 years3070+ years30Pregnant<18-5030Lactating<185035Uses Hair Problems Cradle cap (seborrheic dermatitis) Deficiency Biotin deficiency is relatively rare and mild, and can be addressed with supplementation. Such deficiency can be caused by the excessive consumption of raw egg whites, which contain high levels of the protein avidin, which binds biotin strongly. Avidin is deactivated by cooking, while the biotin remains intact. Toxicity Animal studies have indicated few, if any, effects due to toxic doses of biotin. This may provide evidence that both animals and humans may tolerate doses of at least an order of magnitude greater than each of their nutritional requirements. Vitamin B12 "B12" redirects here. For other uses, see B12 (disambiguation). Vitamin B12Systematic (IUPAC) nameα-(5,6dimethylbenzimidazolyl)cobamidcyanideTherapeutic considerationsPregnancy cat.?Legal statusPOM(UK)Routesoral, ivVitamin B-12 is a vitamin, one of eight B vitamins which is important for the normal functioning of the brain and nervous system, and for the formation of blood. It is normally involved in the metabolism of every cell of the body, especially affecting DNA synthesis and regulation, but also fatty acid synthesis and energy production. Systematic (IUPAC) nameα-(5,6dimethylbenzimidazolyl)cobamidcyanideTher apeutic considerationsPregnancy cat.?Legal statusPOM(UK)Routesoral, iv Terminology name vitamin B-12, known as vitamin B12 (commonly B12 or B-12 for short) generally refers to all forms of the vitamin. Some medical practitioners have suggested that its use be split into two different categories, however. In a broad sense B-12 still refers to a group of cobaltcontaining vitamer compounds known as cobalamins: these include cyanocobalamin (an artifact formed as a result of the use of cyanide in the purification procedures), hydroxocobalamin (another medicinal form), and finally, the two naturally occurring cofactor forms of B-12: 5-deoxyadenosylcobalamin (adenosylcobalamin—AdoB-12), the cofactor of Methylmalonyl Coenzyme A mutase (MUT), and methylcobalamin (MeB-12), the cofactor of 5methyltetrahydrofolate-homocysteine methyltransferase (MTR). Structure Vitamin B-12 is a collection of cobalt and corrin ring molecules which are defined by their particular vitamin function in the body. All of the substrate cobalt-corrin molecules from which B12 is made must be synthesized by bacteria. However, after this synthesis is complete, the body has a limited power to convert any form of B-12 to another, by means of enzymatically removing certain prosthetic chemical groups from the cobalt atom. Functions Vitamin B-12 is normally involved in the metabolism of every cell of the body, especially affecting the DNA synthesis and regulation but also fatty acid synthesis and energy production. However, many (though not all) of the effects of functions of B-12 can be replaced by sufficient quantities of folic acid (another B vitamin), since B-12 is used to regenerate folate in the body. Most "B-12 deficient symptoms" are actually folate deficient symptoms, since they include all the effects of pernicious anemia and megaloblastosis, which are due to poor synthesis of DNA when the body does not have a proper supply of folic acid for the production of thymine. When sufficient folic acid is available, all known B-12 related deficiency syndromes normalize, save those narrowly connected with the B-12 dependent enzymes Methylmalonyl Coenzyme A mutase (MUT), and 5-methyltetrahydrofolatehomocysteine methyltransferase (MTR), also known as methionine synthase;acid, MMA) and homocysteine. Human absorption and distribution The human physiology of vitamin B-12 is complex, and therefore is prone to mishaps leading to vitamin B-12 deficiency. The vitamin as it occurs in foods enters the digestive tract bound to proteins, known as salivary R-binders. Stomach proteolysis of these proteins requires an acid pH, and also requires proper pancreatic release of proteolytic enzymes referred to as pepsin. Clinical symptoms : The main syndrome of vitamin B-12 deficiency is Biermer's disease (pernicious anemia). It is characterized by a triad of symptoms: Anemia with bone marrow promegaloblastosis (Megaloblastic anemia) Gastrointestinal symptoms Neurological symptoms Each of those symptoms can occur either alone or along with others. The neurological complex, defined as myelosis funicularis, consists of the following symptoms: Impaired perception of deep touch, pressure and vibration, abolishment of sense of touch, very annoying and persistent paresthesias. Sources Foods Vitamin B-12 is naturally found in meat (especially liver and shellfish), milk and eggs. Animals, in turn, must obtain it directly or indirectly from bacteria, and these bacteria may inhabit a section of the gut which is posterior to the section where B-12 is absorbed. Thus, herbivorous animals must either obtain B-12 from bacteria in their rumens, or (if fermenting plant material in the hindgut) by reingestion of cecotrope fæces. Eggs are often mentioned as a good B-12 source, but they also contain a factor that blocks absorption.Certain insects such as termites contain B-12 produced by their gut bacteria, in a manner analogous to ruminant animals.An NIH Fact Sheet lists a variety of food sources of vitamin B-12. Other medical uses Hydroxycobalamin, or hydoxocobalamin, also known as Vitamin B-12a, is used in Europe both for vitamin B-12 deficiency and as a treatment for cyanide poisoning, sometimes with a large amount (5-10 g) given intravenously, and sometimes in combination with sodium thiosulfate.[45] The mechanism of action is straightforward: the hydroxycobalamin hydroxide ligand is displaced by the toxic cyanide ion, and the resulting harmless B-12 complex is excreted in urine. Folic acid Properties Molecular formulaC19H19N7O6Molar mass441.403 g/molAppearanceyellow-orange crystalline powderMelting point250 °C (523 K), decomp.Solubility in water0.0016 mg/ml (25 °C)Acidity (pKa)1st: 2.3, 2nd: 8.3 Folic acid and Folate are forms of the water-soluble Vitamin B9. These occur naturally in food and can also be taken as supplements. Folate gets its name from the Latin word folium ("leaf"). History A key observation by researcher Lucy Wills in 1931 led to the identification of folate as the nutrient needed to prevent anemia during pregnancy. Dr. Wills demonstrated that anemia could be reversed with brewer's yeast. Folate was identified as the corrective substance in brewer's yeast in the late 1930s and was extracted from spinach leaves in 1941. Human reproduction There are several important nutrients that serve as building blocks of a healthy pregnancy. Two of the more well-known nutrients for women during child bearing years are folic acid and calcium (with Vitamin D). One nutrient that women are not as familiar with is DHA ( docosahexaenoic acid) omega-3. DHA is important for optimal infant brain, eye and nervous system development, and has been shown to support a healthy pregnancy. Folic acid is very important for all women who may become pregnant. Adequate folate intake during the periconceptional period, the time just before and just after a woman becomes pregnant, helps protect against a number of congenital malformations including neural tube defects. Some current issues and controversies about folate Dietary fortification of folic acid Heart disease Stroke Cancer Memory and mental agility Fertility Ascorbic acid Properties Molecular formulaC6H8O6Molar mass176.1241 g/molAppearanceWhite or light yellow solidDensity1.65 g/cm³Melting point190-192 °C, 463-465 K, 374-378 °F (decomposes)Solubility in water33g/100mlSolubility in ethanol2g/100mlSolubility in glycerol1g/100mlSolubility in propylene glycol5g/100mlSolubility in diethyl ether, chloroform, benzene, petroleum ether, oils, fats, fat solventsinsolubleAcidity (pKa)4.17 (first), 11.6 (second)Hazards MSDSScienceLab.comLD5011.9 g/kg (oral, rat)[ Uses Ascorbic acid is easily oxidized and so is used as a reductant in photographic developer solutions (among others) and as a preservative. Exposure to oxygen, metals, light, and heat destroys ascorbic acid, so it must be stored in a dark, cold, and non-metallic container. The relevant European food additive E numbers are: Movement of electron pairs in deprotonation PropertiesMolecular formulaC20H30OMolar mass286.456 g/mol E300 ascorbic acid, E301 sodium ascorbate, E302 calcium ascorbate, E303 potassium ascorbate, E304 fatty acid esters of ascorbic acid (i) ascorbyl palmitate (ii) ascorbyl stearate. It can be added to water that has been treated with iodine to make it potable, neutralizing the unpleasant iodine taste, and increasing the health benefits of drinking water, although increasing the chance of tooth decay. Retinol Retinol (Afaxin), the animal form of vitamin A, is a fat-soluble vitamin important in vision and bone growth. It belongs to the family of chemical compounds known as retinoids. Retinol is ingested in a precursor form; animal sources (liver and eggs) contain retinyl esters, whereas plants (carrots, spinach) contain provitamin A carotenoids. Discovery In 1913, Elmer McCollum, a biochemist at the University of Wisconsin-Madison, and colleague Marguerite Davis identified a fat-soluble nutrient in butterfat and cod liver oil. Their work confirmed that of Thomas Osborne and Lafayette Mendel, at Yale, which suggested a fat-soluble nutrient in butterfat, also in 1913. Vitamin A was first synthesized in 1947 by two Dutch chemists, David Adriaan van Dorp and Jozef Ferdinand Arens. Clinical use Main article: Tretinoin All retinoid forms of vitamin A are used in cosmetic and medical applications applied to the skin. Retinoic acid, termed Tretinoin in clinical usage, is used in the treatment of acne and keratosis pilaris in a topical cream. An isomer of tretinoin, isotretinoin is also used orally (under the trade names Accutane and Roaccutane), generally for severe or recalcitrant acne. Nutrition Vitamin A deficiency is common in developing countries but rarely seen in developed countries. Approximately 250,000 to 500,000 malnourished children in the developing world go blind each year from a deficiency of vitamin A. Night blindness is one of the first signs of vitamin A deficiency. Vitamin A deficiency contributes to blindness by making the cornea Vitamin D Cholecalciferol (D3) Vitamin D is a group of fat-soluble prohormones, the two major forms of which are vitamin D2 (or ergocalciferol) and vitamin D3 (or cholecalciferol).[1] The term vitamin D also refers to metabolites and other analogues of these substances. Vitamin D3 is produced in skin exposed to sunlight, specifically ultraviolet B radiation. Forms Several forms (vitamers) of vitamin D have been discovered. The two major forms are vitamin D2 or ergocalciferol, and vitamin D3 or cholecalciferol. Vitamin D1 Vitamin D2: Vitamin D3: Vitamin D4 Vitamin D5 Biochemistry Vitamin D is a prohormone, meaning that it has no hormone activity itself, but is converted to the active hormone 1,25-D through a tightly regulated synthesis mechanism. Nutrition Only fish is naturally rich in vitamin D, so much vitamin D intake in the industrialized world is from fortified products including milk, soy milk and breakfast cereals or supplements. The U.S. Dietary Reference Intake for adequate intake (AI) of vitamin D for infants, children and men and women aged 19–50 is 5 micrograms/day (200 IU/day) Adequate intake increases to 10 micrograms/day (400 IU/day) for men and women aged 51–70 and up to 15 micrograms/day (600 IU/day) past the age of 70. These dose rates will be too low during winter months above 30° latitude. In the absence of sun exposure, 1000 IU of cholecalciferol is required daily for children. 4000 IU of vitamin D may be required for adults absent summer UVB. In food Natural sources of vitamin D include: Fish liver oils, such as cod liver oil, 1 Tbs. (15 mL) provides 1,360 IU Fatty fish species, such as: Herring, 85g (3 oz) provides 1383 IU Catfish, 85g (3 oz) provides 425 IU Salmon, cooked, 3.5 oz provides 360 IU Mackerel, cooked, 3.5 oz, 345 IU Sardines, canned in oil, drained, 1.75 oz, 250 IU Tuna, canned in oil, 3 oz, 200 IU Eel, cooked, 3.5 oz, 200 IU deficiency Vitamin D deficiency can result from: inadequate intake coupled with inadequate sunlight exposure, disorders that limit its absorption, conditions that impair conversion of vitamin D into active metabolites, such as liver or kidney disorders, or, rarely, by a number of hereditary disorders Deficiency results in impaired bone mineralization, and leads to bone softening diseases, rickets in children and osteomalacia in adults, and possibly contributes to osteoporosis including: Fish liver oils, such as cod liver oil, 1 Tbs. (15 mL) provides 1,360 IU Fatty fish species, such as: Herring, 85g (3 oz) provides 1383 IU Catfish, 85g (3 oz) provides 425 IU Salmon, cooked, 3.5 oz provides 360 IU Mackerel, cooked, 3.5 oz, 345 IU Sardines, canned in oil, drained, 1.75 oz, 250 IU Tuna, canned in oil, 3 oz, 200 IU Eel, cooked, 3.5 oz, 200 IU Rickets, a childhood disease characterized by impeded growth, and deformity, of the long bones. The earliest sign of subclinical vitamin D deficiency is Craniotabes, abnormal softening or thinning of the skull.[ Osteomalacia, a bone-thinning disorder that occurs exclusively in adults and is characterized by proximal muscle weakness and bone fragility. Osteoporosis, a condition characterized by reduced bone mineral density and increased bone fragility. Tocopherol α-Tocopherol Tocopherol, a class of chemical compounds of which many have vitamin E activity, describes a series of organic compounds consisting of various methylated phenols. Because the vitamin activity was first identified in 1936 from a dietary fertility factor in rats, it was given the name "tocopherol" from the Greek words “τοκος” [birth], and “φορειν”, [to bear or carry] meaning in sum "to carry a pregnancy," with the ending "-ol" signifying its status as a chemical alcohol. Form Vitamin E exists in eight different forms, four tocopherols and four tocotrienols. All feature a chromanol ring, with a hydroxyl group that can donate a hydrogen atom to reduce free radicals and a hydrophobic side chain which allows for penetration into biological membranes. Both the tocopherols and tocotrienols occur in alpha, beta, gamma and delta forms, determined by the number of methyl groups on the chromanol ring. Each form has slightly different biological activity History During feeding experiments with rats Herbert McLean Evans concluded in 1922 that besides vitamins B and C, an unknown vitamin existed.Although every other nutrition was present, the rats were not fertile. This condition could be changed by additional feeding with wheat germ. It took several years until 1936 when the substance was isolated from wheat germ and the formula C29H50O2 was determined. Evans also found that the compound reacted like an alcohol and concluded that one of the oxygen atoms was part of an OH (hydroxyl) group Sources Wheat germ oil (215.4 mg/100 g) Sunflower oil (55.8 mg/100 g) Almond oil (39.2 mg/100 g) Hazelnut (26.0 mg/100 g) Walnut oil (20.0 mg/100 g) Peanut oil (17.2 mg/100 g) Olive oil (12.0 mg/100 g) Peanut (9.0 mg/100 g) Pollard (2.4 mg/100 g) Corn (2.0 mg/100 g) Asparagus (1.5 mg/100 g) Deficiency Vitamin E deficiency causes neurological problems due to poor nerve conduction. These include neuromuscular problems such as spinocerebellar ataxia and myopathies.Deficiency can also cause anemia, due to oxidative damage to red blood cells. Other uses Controversy "Megadoses" of Vitamin E are not recommended by many government agencies, due to a possible increased risk of bleeding. A 2005 meta-analysis by Miller found that high-dosage vitamin E supplements may increase all-cause mortality. "High dose" vitamin E esters (>400 units/day) were also associated with an increased risk in allcause mortality of 39 per 10,000 persons, and a statistically significant relation existed between dose and mortality, with increased risk at doses exceeding 150 units per day. During pregnancy Recent studies into the use of both vitamin C and the single isomer vitamin E esters as possible help in preventing oxidative stress leading to pre-eclampsia has failed to show significant benefits, but did increase the rate of babies born with a low birthweight in one study. Heart disease Preliminary research has led to a widely held belief that vitamin E may help prevent or delay coronary heart disease, but larger controlled studies have not shown any benefit. Many researchers advance the belief that oxidative modification of LDL-cholesterol (sometimes called "bad" cholesterol) promotes blockages in coronary arteries that may lead to atherosclerosis and heart attacks. Vitamin E may help prevent or delay coronary heart disease by limiting the oxidation of LDL-cholesterol. Vitamin E also may help prevent the formation of blood clots, which could lead to a heart attack. Observational studies have associated lower rates of heart disease with higher vitamin E intake. A study of approximately 90,000 nurses suggested that the incidence of heart disease was 30% to 40% lower among nurses with the highest intake of vitamin E from diet and supplements. The range of intakes from both diet and supplements in this group was 21.6 to 1,000 IU (32 to 1,500 mg), with the median intake being 208 IU (139 mg). A 1994 review of 5,133 Finnish men and women aged 30 - 69 years suggested that increased dietary intake of vitamin E was associated with decreased mortality (death) from heart disease. Cancer Antioxidants such as vitamin E help protect against the damaging effects of free radicals, which may contribute to the development of chronic diseases such as cancer. Vitamin E also may block the formation of nitrosamines, which are carcinogens formed in the stomach from nitrites consumed in the diet. It also may protect against the development of cancers by enhancing immune function. Vitamin K This article is about the biomolecule known as vitamin K. For the unrelated drug sometimes referred as vitamin K, see ketamine. Vitamin . Vitamin K1 (phylloquinone). Both contain a functional naphthoquinone ring and an aliphatic side chain. Phylloquinone has a phytyl side chain. Vitamin K2 (menaquinone). In menaquinone the side chain is composed of a varying number of isoprenoid residues. Physiology Vitamin K is involved in the carboxylation of certain glutamate residues in proteins to form gammacarboxyglutamate residues (abbreviated Glaresidues). The modified residues are situated within specific protein domains called Gla domains. Glaresidues are usually involved in binding calcium. Blood coagulation: (prothrombin (factor II), factors VII, IX, X, protein C, protein S and protein Z). At this time 14 human proteins with Gla domains have been discovered, and they play key roles in the regulation of three physiological processes: Bone metabolism: osteocalcin, also called bone Gla-protein (BGP), and matrix gla protein (MGP) Vascular biology. Role in disease Vitamin K-deficiency may occur by disturbed intestinal uptake (such as would occur in a bile duct obstruction), by therapeutic or accidental intake of vitamin K-antagonists or, very rarely, by nutritional vitamin K-deficiency. As a result, Gla-residues are inadequately formed and the Gla-proteins are insufficiently active. Discovery In 1929, Danish scientist Henrik Dam investigated the role of cholesterol by feeding chickens a cholesterol-depleted diet. After several weeks, the animals developed hemorrhages and started bleeding. These defects could not be restored by adding purified cholesterol to the diet. It appeared that together with the cholesterol a second compound had been extracted from the food, and this compound was called the coagulation vitamin. The new vitamin received the letter K because the initial discoveries were reported in a German journal, in which it was designated as Koagulationsvitamin. Edward Adelbert Doisy of Saint Louis University did much of the research that led to the discovery of the structure and chemical nature of Vitamin K.Dam and Doisy shared the 1943 Nobel Prize for medicine for their work on Vitamin K. Several laboratories synthesized the compound in 1939. Mineral A mineral is a naturally occurring substance formed through geological processes that has a characteristic chemical composition, a highly ordered atomic structure and specific physical properties. A rock, by comparison, is an aggregate of minerals and need not have a specific chemical composition. Minerals range in composition from pure elements and simple salts to very complex silicates with thousands of known forms. The study of minerals is called mineralogy. Mineral definition and classification To be classified as a true mineral, a substance must be a solid and have a crystalline structure. It must also be a naturally occurring, homogeneous substance with a defined chemical composition. Traditional definitions excluded organically derived material. However, the International Mineralogical Association in 1995 adopted a new definition: a mineral is an element or chemical compound that is normally crystalline and that has been formed as a result of geological processes. The chemical composition may vary between end members of a mineral system. For example the plagioclase feldspars comprise a continuous series from sodium-rich albite (NaAlSi3O8) to calcium-rich anorthite (CaAl2Si2O8) with four recognized intermediate compositions between. Mineral-like substances that don't strictly meet the definition are sometimes classified as mineraloids. Other naturaloccurring substances are nonminerals. Industrial minerals is a market term and refers to commercially valuable mined materials (see also Minerals and Rocks section below). Physical properties of minerals Classifying minerals can range from simple to very difficult. A mineral can be identified by several physical properties, some of them being sufficient for full identification without equivocation. In other cases, minerals can only be classified by more complex chemical or Xray diffraction analysis; these methods, however, can be costly and time-consuming. Physical properties commonly used are: Crystal structure and habit: See the above discussion of crystal structure. A mineral may show good crystal habit or form, or it may be massive, granular or compact with only microscopically visible crystals. Talc Rough diamond. Hardness: the physical hardness of a mineral is usually measured according to the Mohs scale. This scale is relative and goes from 1 to 10. Minerals with a given Mohs hardness can scratch the surface of any mineral that has a lower hardness than itself. Talc Mg3Si4O10(OH)2 Gypsum CaSO4·2H2O Calcite CaCO3 Fluorite CaF2 Apatite Ca5(PO4)3(OH,Cl,F) Orthoclase KAlSi3O8 Quartz SiO2 Topaz Al2SiO4(OH,F)2 Corundum Al2O3 Diamond C (pure carbon) Lustre Color indicates the appearance of the mineral in reflected light or transmitted light for translucent minerals (i.e. what it looks like to the naked eye). Streak refers to the color of the powder a mineral leaves after rubbing it on an unglazed porcelain streak plate Note that this is not always the same color as the original mineral. Cleavage describes the way a mineral may split apart along various planes. In thin sections, cleavage is visible as thin parallel lines across a mineral. Fracture describes how a mineral breaks when broken contrary to its natural cleavage planes. Chonchoidal fracture is a smooth curved fracture with concentric ridges of the type shown by glass. Hackley is jagged fracture with sharp edges. Fibrous Irregular Chemical properties of minerals Minerals may be classified according to chemical composition. They are here categorized by anion group. The list below is in approximate order of their abundance in the Earth's crust. The list follows the Dana classification system. Silicate class quartz The largest group of minerals by far are the silicates (most rocks are ≥95% silicates), which are composed largely of silicon and oxygen, with the addition of ions such as aluminium, magnesium, iron, and calcium. Some important rock-forming silicates include the feldspars, quartz, olivines, pyroxenes, amphiboles, garnets, and micas. Carbonate class The carbonate minerals consist of those minerals containing the anion (CO3)2- and include calcite and aragonite dolomite and siderite . Carbonates are commonly deposited in marine settings when the shells of dead planktonic life settle and accumulate on the sea floor. Carbonates are also found in evaporitic settings and also in karst regions, where the dissolution and reprecipitation of carbonates leads to the formation of caves, stalactites and stalagmites. The carbonate class also includes the nitrate and borate minerals. Sulfate class Sulfates all contain the sulfate anion, SO42-. Sulfates commonly form in evaporitic settings where highly saline waters slowly evaporate, allowing the formation of both sulfates and halides at the watersediment interface. Sulfates also occur in hydrothermal vein systems as gangue minerals along with sulfide ore minerals. Another occurrence is as secondary oxidation products of original sulfide minerals Halide class Halite The halides are the group of minerals forming the natural salts and include fluorite (calcium fluoride), halite (sodium chloride), sylvite (potassium chloride), and sal ammoniac (ammonium chloride). Halides, like sulfates, are commonly found in evaporitic settings such as playa lakes and landlocked seas such as the Dead Sea and Great Salt Lake. The halide class includes the fluoride, chloride, bromide and iodide minerals. Oxide class Oxides are extremely important in mining as they form many of the ores from which valuable metals can be extracted. They also carry the best record of changes in the Earth's magnetic field. They commonly occur as precipitates close to the Earth's surface, oxidation products of other minerals in the near surface weathering zone, and as accessory minerals in igneous rocks of the crust and mantle. Common oxides include hematite (iron oxide), magnetite (iron oxide), chromite (iron chromium oxide), spinel (magnesium aluminium oxide - a common component of the mantle), ilmenite (iron titanium oxide), rutile (titanium dioxide), and ice (hydrogen oxide). The oxide class includes the oxide and the hydroxide minerals. Phosphate class The phosphate mineral group actually includes any mineral with a tetrahedral unit AO4 where A can be phosphorus, antimony, arsenic or vanadium. By far the most common phosphate is apatite which is an important biological mineral found in teeth and bones of many animals. The phosphate class includes the phosphate, arsenate, vanadate, and antimonate minerals. Element class The elemental group includes metals and intermetallic elements (gold, silver, copper), semimetals and non-metals (antimony, bismuth, graphite, sulfur). This group also includes natural alloys, such as electrum (a natural alloy of gold and silver), phosphides, silicides, nitrides and carbides (which are usually only found naturally in a few rare meteorites). Organic class The organic mineral class includes biogenic substances in which geological processes have been a part of the genesis or origin of the existing compound. Minerals of the organic class include various oxalates, mellitates, citrates, cyanates, acetates, formates, hydrocarbons and other miscellaneous species. Examples include whewellite, moolooite, mellite, fichtelite, carpathite, evenkite and abelsonite. Carbohydrate is generally defined as a neutral compound made up of carbon, hydrogen and oxygen, the last two elements remaining in the same proportion as in water. The general formula is cn (H2 O) . But there are many exceptions. For instance, rhamnose (C6 H12 O5 ) is a carbohydrate in which H and O remain in a different proportion. Also there are certain other compounds, such as formaldehyde (HCHO), acetic acid (CH3COOH),lactic acid (CH3CHOHCOOH), etc., which have got the same empirical formula but are not carbohydrates. Thus chemically, carbohydrates can be defined as the aldehyde and ketone derivatives of higher polhydric alcohol (having more than OH group). Carbohydrate are classified according to the number of simple sugar units present in the molecules, viz. (1) (2) I. Simple carbohydrates. Compound carbohydrates. SIMPLE CARBOHYDRATES OR MONOSACCHARIDES OR SIMPLE SUGARS. They contain only one unit of simple sugar. For instance, glucose, fructose, galactose, etc. Monosaccharide are further subdivided in two ways. (1) (2) According to the number of carbon atoms presents in the molecules, viz., 1,2,3,4,5,6 and 7 carbon atoms respectively. According to the nature of the reducing group they contain, viz. (a) Aldoses, e.g., glucose. Here, the reducing group is an aldehyde (-CHO) radicle. (b) Ketoses- these contain ketone (C=O) group, viz. fructose. The general formula of monosaccharide is Cn(H2O)n. They are colour crystalline compound having a taste Chemically they are derivatives of polyhydric alcohols. The aldoses are derived from primary alcohols and the ketoses from secondary alcohols Formation of esters. By virtue of the alcohol group they easily from esters with acid, eg., acetates, benzoates , etc. Sach esters, having great physiological importance, are those of phosphoric acid , viz., hexose phosphates, which play an important role in carbohydrat metabolism; pentose phosphates, present in the nucleic acid and such others. Reducing power By virtue of the aldehyde (_CHO) or (C=O) group , simple sugars are powerful reducing agents. They easily reduce alkaline copper , bismuth or silver solutions. Isomerism . Due to presence of asymmetric carbon atom in the molecule , monosaccharides may remain in different isomeric forms. Optical rotation . Simple sugars rotate the plane of polarised light and therefore may exist in either dextro or laevo forms. Condensation . Simple sugars condense and from bigger carbohydrate molecules, viz., polysaccharides. Formation of glycosides. When replaceable hydrogen atom of a hydroxyl group from sugar is substituted with other radicles it is called a glycoside; that formed from glucose is a glucoside, from galactose a galactoside and the like . A good number of glycosides occur in leaves, roots, etc., of plants and are bitter solids, Phlorizine (glucose + phloretin ), digitonin (galactose + xylose + digitogenin ), indican (glucose + indoxyl )are a few examples of them . Sugar acids , Either carbon atom one or six in a hexose molecule may be oxidised to carboxyl group That formed from oxidation of number one is named hexonic acid (glucose --> gluconic acid ), and from six called uronic acid (glucose --> glucuronic acid ) . Many drugs and a number of hormones combine with glucuronic acid in the body and are excreted as glucuronides. Formation of hexosamine . Replacement of hydroxyl group in hexose sugar with amino one produces amino sugar or hexosamine, that formed from glucose is glucosamine . They occur in some complex polysaccharides. Osazone formation . All reducing sugars condense with phenylhydrazine and produces osazone compounds. The crystalline forms of these osazone compounds are so characteristic that they can be used for the identification of the particular sugar . However glucose, glucosamine and fructose from similar osazones. Ring Structures of the sugars, sugars not only remain as straight chain compounds but may also remain in the form of rings , This ring may include six members or five members Haworth has suggested all sugars having six membered rings to be called pyranoses and those forming five membered ring , furanoses. Fermentation. Sugar , in general undergo fermentation by yeast and other micro organisms. (1). Trioses. Two trioses are of great physiological importance glyceric aldehyde and dihydroxyacetone. The corresponding phosphoric acid esters –phosphoglyceraldehyde and dihydroxyacetone phosphate are of great physiological value. (2) . Pentoses. (a) Two different pentoses are present in two nucleic acids RNA. Sugar ribose is present in the RNA, where as that present in DNA is deoxyribose. In the free state both the sugars exist in the pyranose form. In combination with nucleic acids they exist as deoxyribofuranose and ribofuranose. (b) Arabinose __-It is also pentose commonly found in gum arabicchiefly as l-arabopyranose. (3). Hexoses The following hexoses are of physiological importance. a. Glucose . It is found in grapes, dextrorotatory and is an aldose. Glucose is found in nature in free from , in the from of disaccharides, in the from of polysaccharides and in combination with proteins . It may remain both as a straight chain compound and as well as, in various ring forms . a- and b- glucose are the isomeric forms. The optical reaction of glucose is peculiar . As soon as dextrose is dissolved in water it gives a specific rotation of +112 . On standing the rotation gradually diminishes and finally remains constant at +52.5 .this phenomenon is called mutarotation. If however, dextrose be first recrystallised from boiling pyridine, its solution in water at first gives a rotation of +19 and not +112. This solution on standing also shows mutarotation in which the specific rotation gradually increases and finally becomes constant at the same value, +52.5 . This shows that when in solution one particular variety changes into the other, until an equilibrium mixture of the two forms is produced with a constant rotation of +52.5 . Due to asymmetrical nature of carbon atom 1 in ring form of glucose , it can exist in two forms. The a-glucose has a rotation of =112 and the B-form , +19. A solution of glucose is an equilibrium mixture between the straight chain and both a- and B-ring forms, the percentage of B- being more than a- Glucose forms esters with phosphoric acid. b. Fructose It is laevorotatory and is a ketone. Free fructose is present in honey and nearly in all sweet fruits in combination it cane sugar and insulin. In the human body normally it does not occur in free state and rapidly converted into glucose in the liver and intestine. In contrast with other sugars, fructose is soluble in hot absolute alcohol . Like glucose it also forms phosphoric acid esters which play an important role in carbohydrate metabolism. c. Glucose . It does not occur free in nature. In the body it is found as a constituent of lactose and cerebrosides . As polysaccharide it is present in lichens, mosses, sea-weeds,etc d. Mannose does not occur free in nature . It is found as a constituent of certain animal proteins and converted to glucose in the body. It is also found as a polysaccharide known as mannan specially found in the ivorynuts. (4) . Heptoses. In the metabolic pathway of pentose phosphate by hexose monophosphate shunt, a seven carbon ketosugar, sedoheptulose is formed as an ester with phosphoric acid , 2.Compound Carbohydrates These are made up of from two to one thousand or more than thousand monosaccharide units either with or without non – carbohydrate units. Thus on hydrolysis these may give rise to monosaccharide and non-carbohydrate units. These are principally of two type; (a) Simpler Compound (b) More Complex Compound The Simpler Compound –carbohydrate contains only a few monosaccharide units and are crystalline, water – soluble and given sweet taste . These simpler compounds are generally called Oligosaccharides. Oligosaccharides on hydrolysis give rise to at least two to ten monosaccharide units. Thus oligosaccharides are composed of Disaccharides , Trisaccharides and Tetrasaccharides , More Complex Compounds -- these carbohydrates include glycogen , cellulose, starch and also dextrin's which are composed of ten or more monosaccharide units . These are mostly tasteless and are amorphous solid substance , As these compounds are composed of many monosaccharide units, these are called polysaccharide which are composed of ten or more monosaccharide units, held together by glycosidic linkages. Those polysaccharides are composed of monosaccharides are called Homoglycans whereas those are made up of two or more different types of monosaccharides are named as hetroglycans.. Simpler Compound Carbohydrates Oligosaccharides (a) Disaccharides, (b) Trisaccharides, (c) Tetrasaccharides, - include Disaccharides These can be regarded as condensation products of two monosaccharide units with the elimination of one molecule of water. Their general formula is C (H O) During union the active groups become engaged. In lactose only one aldehyde group becomes engaged and one aldehyde group remains free. Similar is the case with maltose. But in case sugar both the active radicles (--CHO of glucose and –CO of fructose) become engaged. For this reason lactose and maltose can reduce alkaline copper , form any osazone crystals and exhibit mutarotation . Cane sugar , on the other hand, in which both the active radicles are engaged, shows no reducing power, dos not form any osazone nor shows any mutarotation . In nature about 16 disaccharides are present . Of these only the following three are of physiological importance. Lactose (milk sugar)— composed of one molecule of glucose and one of galactose, found in the milk of mammals. Maltose (Malt sugar)— composed of two glucose units , it is an intermediate product in digestion of starch. Sucrose (Cane sugar)— On hydrolysis it gives rise to one molecule of glucose and one of fructose. It is the chief form of sugar taken in diet. It is widely distributed in many plants juices, such as sugar cane , sugar maple, pine apple and also in sugar beets. Sucrose is dextrorotatory but on hydrolysis the resulting mixture becomes laevorotatory owing to the liberation of fructose. The laevo rotation of fructose is greater then the dextro rotation of glucose. For this reason the mixture is known as invert sugar and the enzyme which hydrolyses sucrose is also called invertase . Trehalose— it is present in the haemolymph of insects as the principal sugar, also occurs in yeast and fungi. T R I S A These type of oligosaccharides on hydrolysis give rise to three monosaccharides units. These trisaccharides are: (1) Mannotriose – giving rise to two molecules of galactose and one molecules of glucose on hydrolysis. (2) Robinose-on hydrolysis gives rise to galactose and two molecules of rhamnose. (3) Rhamninose – on hydrolysis gives rise to galactose and two molecules of rhamnos. (4) Raffinose – onhydrolysis gives rise to fructose , glucose and galactose . (5) Gentianose— on hydrolysis gives rise to fructose and two molecules of glucose (6) Melibiose— On hydrolysis give rise to fructose and two molecules of glucose. Among six trisaccharides described, the first three are reducing and rest three are non-reducing the general formula of trisaccharides is C (H O) Only two tetrasaccharides are known. These are (1) Stachyose which is composed of D—glucose, --galactose and – fructose found in stachys tuberifera and (2) Scorodose in the bulbs of garlic and onion, Polysaccharides are made up of a large number of monosaccharide units. During condensation all the active radicles become engaged, so that they do not show any reducing power, do not produce any osazone and are generally not sweet to taste. They are soluble in water excepting cellulose. The molecules are large and hence, show colloidal properties. The empirical formula of polysaccharides is (C H O). Polysaccharides are classified according to the nature of the constituent units . For instance, those made up of pentose units are called pentosans, those of hexose units hexosans,etc. More specifically they are composed. For instance, glucosans are made of glucose, galactans of galactos, fructosans of fructose and such other. Starch, glycogen and cellulose are glucosans. Inulin is a fructosan. Agar agar is a galactosan Gums are mixtures of both pentosans and hexosans. Starch.— This is the chief form of carbohydrate taken in diet. It is manufactured by the plants and plays the same role in them as glycogen dose in animals, I.e., an easily available sugar store. It is the main constituent of food grains. Starch form different sources can be identified form their microscopic peculiarities . It is insoluble in cold Water due to the presence of an outer cellulose layer around the granule. On boiling the insoluble cellulose covering ruptures and starch enters into a colloidal solution. It is a glucosen and on hydrolysis breaks down into glucose. It gives blue colour with iodine . It has got no reducing power and is tasteless. Starch is a mixture of two substance having similar structure – amylose (mol wt 60.000) And amylopectin (mol. Wt.300.000) both being composed of chains of 24 to30 glucopyranose units. Glycogen. – it is called animal starch ; because it is in this form that glucose remains stored in the liver and muscles of animal body. Glycogen is also found in those plants which do not possess any chlorophyll, such as yeast, fungi, etc., but not in green plants. There is probably more than one type of glycogen. When rabbit is fed with glucose , it synthesises a glycogen containing 12 glucose units, but if fed with galactose it forms a glycogen with 18 glucose units , but curiously enough , mixtures of glycogens with 12 and 18 units .are not found. Glycogen is soluble in water, makes an opalescent solution and gives reddish colour with iodine. The glycogen molecule contains many glucose units. The units are joined by linkage between carbon 1 of one unit to carbon 4 of the next one; branches involving 1,6 linkages are frequently present. (c) Dextrins— They do not occur naturally, but are the split products of starch resulting form hydrolysis For this reason they ought to have been described as derived carbohydrates. The term dextrin is a group name including several varieties of dextrins. The earlier products of hydrolysis of starch all called dextrins the name of the different dextrins are given according to their colour reaction with iodine. The first dextrin formed is amylodextrin giving blue colour with iodine, the next product is called erythrodextrin giving red colour with iodine and the next product gives no colour with iodine and is called achroodextrin. As these products become smaller and smaller, they develop more and more the characteristic properties of monosaccharide, such as the reducing power, a sweet taste and the others. (d) Cellulose.— it is a stable, insoluble compound, found in the plants and never present in the animal body. Cellulose is taken with vegetable food. It can not be digested by the human beings . Herbivorous animals can digest cellulose with the help of bacteria. Although indigestible, yet cellulose is of considerable importance in human dietetics, because it add ‘bulk’ to the intestinal contents, stimulate peristalsis and there by help in the formation and evacuation of faeces. Filter papers, commonly used in the laboratories, are almost pure cellulose . (e) Inulin. – It is a polysaccharide composed of D-fructose units. It is a white crystalline powder and is readily soluble in hot water. It dose not give any such characteristic colour with iodine. Other polysaccharides containing carbohydrate and noncarbohydrate units are: (1) Heteropentosans (2) Heterohexosans (3) Mucopolysaccharides– are composed of two to six different monosaccharides units including amino sugar and uronic acid. Many important biological compounds are included in this group, they are hyaluronic acid chondroitin sulphate, heparin, blood group substances, etc. the first three are called acid mucopolysaccharides due to their acidic character. The mucopolysaccharides in tissues are usually present in combination with protein and are called glycoproteins . (a) It is the readily available fuel of the body . (b) It also constitutes the structural material of the organism. (c) It also acts as important storage of food material of the organism. (d) Carbohydrate also plays as a key role in the metabolism of amino acids and fatty acids.