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DNA: The Genetic Material Chapter 12 The Genetic Material Frederick Griffith, 1928 studied Streptococcus pneumoniae, a pathogenic bacterium causing pneumonia there are 2 strains of Streptococcus: - S strain is virulent - R strain is nonvirulent Griffith infected mice with these strains hoping to understand the difference between the strains 2 The Genetic Material Griffith’s results: - live S strain cells killed the mice - live R strain cells did not kill the mice - heat-killed S strain cells did not kill the mice - heat-killed S strain + live R strain cells killed the mice 3 4 The Genetic Material Griffith’s conclusion: - information specifying virulence passed from the dead S strain cells into the live R strain cells - Griffith called the transfer of this information transformation 5 The Genetic Material Avery, MacLeod, & McCarty, 1944 repeated Griffith’s experiment using purified cell extracts and discovered: - removal of all protein from the transforming material did not destroy its ability to transform R strain cells - DNA-digesting enzymes destroyed all transforming ability - the transforming material is DNA 6 The Genetic Material Hershey & Chase, 1952 - investigated bacteriophages: viruses that infect bacteria - the bacteriophage was composed of only DNA and protein - they wanted to determine which of these molecules is the genetic material that is injected into the bacteria 7 The Genetic Material - Bacteriophage DNA was labeled with radioactive phosphorus (32P) - Bacteriophage protein was labeled with radioactive sulfur (35S) - radioactive molecules were tracked - only the bacteriophage DNA (as indicated by the 32P) entered the bacteria and was used to produce more bacteriophage - conclusion: DNA is the genetic material 8 9 DNA Structure DNA is a nucleic acid. The building blocks of DNA are nucleotides, each composed of: – a 5-carbon sugar called deoxyribose – a phosphate group (PO4) – a nitrogenous base • adenine, thymine, cytosine, guanine 10 11 DNA Structure The nucleotide structure consists of – the nitrogenous base attached to the 1’ carbon of deoxyribose – the phosphate group attached to the 5’ carbon of deoxyribose – a free hydroxyl group (-OH) at the 3’ carbon of deoxyribose 12 13 DNA Structure Nucleotides are connected to each other to form a long chain phosphodiester bond: bond between adjacent nucleotides – formed between the phosphate group of one nucleotide and the 3’ –OH of the next nucleotide The chain of nucleotides has a 5’ to 3’ orientation. 14 15 DNA Structure Determining the 3-dimmensional structure of DNA involved the work of a few scientists: – Erwin Chargaff determined that • amount of adenine = amount of thymine • amount of cytosine = amount of guanine This is known as Chargaff’s Rules 16 DNA Structure Rosalind Franklin and Maurice Wilkins – Franklin performed X-ray diffraction studies to identify the 3-D structure – discovered that DNA is helical – discovered that the molecule has a diameter of 2nm and makes a complete turn of the helix every 3.4 nm 17 DNA Structure James Watson and Francis Crick, 1953 – deduced the structure of DNA using evidence from Chargaff, Franklin, and others – proposed a double helix structure 18 DNA Structure The double helix consists of: – 2 sugar-phosphate backbones – nitrogenous bases toward the interior of the molecule – bases form hydrogen bonds with complementary bases on the opposite sugar-phosphate backbone 19 DNA Structure The two strands of nucleotides are antiparallel to each other – one is oriented 5’ to 3’, the other 3’ to 5’ The two strands wrap around each other to create the helical shape of the molecule. 20 21 DNA Replication Matthew Meselson & Franklin Stahl, 1958 investigated the process of DNA replication considered 3 possible mechanisms: – conservative model – semiconservative model – dispersive model 22 23 DNA Replication Meselson and Stahl concluded that the mechanism of DNA replication is the semiconservative model. Each strand of DNA acts as a template for the synthesis of a new strand. 27 DNA Replication •DNA replication is the process of copying a DNA molecule. Replication is semiconservative, with each strand of the original double helix (parental molecule) serving as a template (mold or model) for a new strand in a daughter molecule. This process consists of: •Unwinding (initiation): old strands of the parent DNA molecule are unwound as weak hydrogen bonds between the paired bases are “unzipped” and broken by the enzyme helicase. •Complementary base pairing (elongation): free nucleotides present in the nucleus bind with complementary bases on unzipped portions of the two strands of DNA; this process is catalyzed by DNA polymerase. •Joining (elongation): complementary nucleotides bond to each other to form new strands; each daughter DNA molecule contains an old strand and a new strand; this process is also catalyzed by DNA polymerase. •termination – replication is terminated differently in prokaryotes and eukaryotes Ends in prokaryotes when origin is reached Ends in eukaryotes when telomere is reached telomeres – repeated DNA sequence on the ends of eukaryotic chromosomes •DNA replication must occur before a cell can divide; in cancer, drugs with molecules similar to the four nucleotides are used to stop replication. 28 29 Prokaryotic Versus Eukaryotic Replication 30 •Prokaryotic Replication •Bacteria have a single loop of DNA that must replicate before the cell divides. •Replication in prokaryotes may be bidirectional from one point of origin or in only one direction. •Replication only proceeds in one direction, from 5' to 3'. •Bacterial cells are able to replicate their DNA at a rate of about 106 base pairs per minute. •Bacterial cells can complete DNA replication in 40 minutes; eukaryotes take hours. •Eukaryotic Replication •Replication in eukaryotes starts at many points of origin and spreads with many replication bubbles—places where the DNA strands are separating and replication is occurring. •Replication forks are the V-shape ends of the replication bubbles; the sites of DNA replication. •Eukaryotes replicate their DNA at a slower rate – 500 to 5,000 base pairs per minute. •Eukaryotes take hours to complete DNA replication. 32 •Replication Errors •A genetic mutation is a permanent change in the sequence of bases. •Base changes during replication are one way mutations occur. •A mismatched nucleotide may occur once per 100,000 base pairs, causing a pause in replication. •Proofreading is the removal of a mismatched nucleotide; DNA repair enzymes perform this proofreading function and reduce the error rate to one per billion base pairs. •Incorrect base pairs that survive the proofreading process contribute to gene mutations. 33