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Natural Selection DNA encodes information that interacts with the environment to influence phenotype Among The Traits That Can Be Influenced By Genetically Determined Responses to the Environment Are: 1. The Viability in the Environment 2. Given Alive, the Mating Success in the Environment 3. Given Alive and Mated, Fertility or Fecundity in the Environment. Viability Hb- Locus In Africa: Non-Malarial Area Viability: A/A No Anemia High Not Resistant Malarial Area to Malaria Viability: Low A/S S/S No Anemia Anemia High Low Resistant Anemia High Low Mating Success Normal Diet Low Phenylalanine Diet p/p fetus develops in Low Phenylalanine in utereo Environment p/p Baby Born With Normal Brain Mentally Retarded Institutionalized Low Chance of Mating Normal Intelligence High Chance of Mating Fecundity/Fertility H/+ In A Society With No Birth Control, No Genetic Literacy, and Low Expected Lifespan: Normal Fecundity H/+ In A Society With Birth Control, Genetic Literacy, and High Expected Lifespan: Low Fecundity Why Are Viability, Mating Success, and Fecundity/Fertility Important Phenotypes in Evolution? Because All Of These Phenotypes Influence The Chances For Successful DNA Replication Physical Basis of Evolution • DNA can replicate • DNA can mutate and recombine • DNA encodes information that interacts with the environment to influence phenotype Physical Basis of Evolution • DNA can replicate • DNA can mutate and recombine • DNA encodes information that interacts with the environment to influence phenotype Viability Mating Success Fecundity/Fertility Physical Basis of Evolution • DNA can replicate • DNA can mutate and recombine • DNA encodes information that interacts with the environment to influence phenotype Viability Mating Success Fecundity/Fertility These Are Combined Into A Single Phenotype of Reproductive Success Or FITNESS DNA can mutate and recombine DNA can replicate Genotypic Variation In Demes and Species Heritable Variation In Fitness Phenotypic Variation In Fitness Environment Natural Selection Is Heritable Variation In Fitness That Is, The Genes Borne By A Gamete Influence The Probability of That Gamete Being Passed On To The Next Generation. THINK LIKE A GAMETE! NATURAL SELECTION IS NOT CIRCULAR DNA can mutate and recombine DNA can replicate Genotypic Variation In Demes and Species Heritable Variation In Fitness Phenotypic Variation In Fitness It’s the Environment, stupid! Natural Selection At A Single Locus in A Randomly Mating Deme Zygotic Frequencies Environment Viabilities Adult Frequencies Environment Mating Prob. Mated Adult Frequencies Environment Ave. No. Offspring Mated Adult Frequencies Weighted By No. of Off. AA p2 Aa 2pq aa q2 VAA VAa Vaa AA p2 VAA Aa 2pqVAa aa q2 Vaa CAA CAa Caa AA p2 VAACAA bAA AA p2 VAACAAbAA Aa 2pqVAaCAa bAa Aa 2pqVAaCAabAa aa q2 VaaCaa baa aa q2 VaaCaabaa Let WAA = VAACAAbAA; WAa = VAaCAabAa; Waa = VaaCaabaa AA p2 Zygotic Frequencies Environment Fitness Mated Adult Frequencies Weighted By No. of Off. Aa 2pq aa q2 WAA WAa Waa AA p2 WAA Aa 2pqWAa aa q2 Waa AA Aa 2pqWAa/W aa q2Waa/W Convert to Freq. By Dividing by = W = p2WAA+2pqWAa+q2Waa Mated Adult Frequencies Meiosis Gene Pool p2 WAA/W 1 1/ 2 1/ 1 2 A a p’= p2 WAA/W + pqWAa/W q’= q2 Waa/W + pqWAa/W Gene Pool A a p’= p2 WAA/W + pqWAa/W q’= q2 Waa/W + pqWAa/W p’= p2 WAA/W + pqWAa/W =( p2 WAA+ pqWAa)/W p’ = p(pWAA+ qWAa)/W Does Evolution Occur? p = p’ - p = p(pWAA+ qWAa)/W - p = p[pWAA+ qWAa)/W - 1] p = p[pWAA+ qWAa- W]/W Does Evolution Occur? Note, W = W(p+q)=pW+qW p = p[pWAA+ qWAa- W]/W =p[p(WAA-W)+ q(WAa-W)]/W Since p and W are always > 0, This is the only part of the equation That Can Change Sign and Hence Determine the Direction of Evolution Under Natural Selection. Does Evolution Occur? What is: p(WAA-W)+ q(WAa-W)? Mean Phenotype of Fitness Does Evolution Occur? What is: p(WAA-W)+ q(WAa-W)? Genotypic Deviations for the Phenotype of Fitness Does Evolution Occur? What is: p(WAA-W)+ q(WAa-W)? This is the Average Excess of the A Allele for the Phenotype of Fitness Does Evolution Occur? p = paA/W Does Evolution Occur? p = paA/W Natural Selection is An Evolutionary Force Whenever p ≠ 0 or p ≠ 1 (that is, there is Genetic variation) and when aA ≠ 0 (that is, When there is heritable variation in the Phenotype of fitness). To Understand Natural Selection THINK LIKE A GAMETE! Sickle Cell Anemia In Africa An Example of Natural Selection The Sickle Cell Mutation Infection of a Red Blood Cell By a Malarial Parasite • Sickle-Cells Are Filtered Out Preferentially by the Spleen • Malaria Infected Cells Are Often Filtered Out Because of Sickling Before the Parasite Can Complete Its Life Cycle • The Sickle Cell Allele is Therefore an Autosomal, Dominant Allele for Malarial Resistance. The Sickle Cell Anemia Phenotype Most Deaths Due to Sickle Cell Anemia and Due to Malaria Occur Before Adulthood. Viability Is The Phenotype of Living To Adulthood • In a non-Malarial Environment, The S Allele is a Recessive Allele For Viability Because Only the Homozygotes Get Sickle Cell Anemia. • In a Malarial Environment, The S Allele is an Overdominant Allele For Viability Because Only the Heterozygotes Are Resistant to Malaria And Do Not Get Sickle Cell Anemia. Two Complications to This Simple Story in Africa: 1. Epidemic Malaria is Recent to Most of Wet, Tropical Africa and the Process of Adaptation to Malaria in Africa Is Still Not in Equilibrium. 2. There is a Third Allele, Hemoglobin C, Involved in the Adaptation to Malaria in Africa. Epidemic Malaria in Africa I CE LAND MA DAGASCA R About 2000 years ago, A Malayo-Indonesian Colony Was Established on Madagasgar Epidemic Malaria in Africa This Colony Introduced The Malaysian Agricultural Complex into This Region Epidemic Malaria in Africa This Agricultural Complex Was Taken Up By BantuSpeaking Peoples, Followed by A Large Expansion of the Bantu In Africa About 1500 years Ago. The Malaysian Agricultural Complex In Africa • Is associated with slash-and-burn agriculture: Provides habitat and breeding sites for Anopheles gambiae, the primary mosquito vector for falciparum malaria. • Results in the high local densities of human populations that are necessary to establish and maintain malaria as a common disease. Epidemic Malaria in Africa The Hemoglobin C Mutation Hb-S Hb-A GTG GAG Valine Glutamic Acid Hb-C 6th Codon AAG Lysine The Hemoglobin C Mutation Hb-C Is A “Recessive” Allele for Malarial Resistance Hb-A, S and C Genotypes AA AS Anemia SS AC CS Yes Yes No No No (Severe) (Mild) CC NO Malarial No Yes Resistance Yes No Yes Yes Viability No Malaria 0.2 1 0.7 1 1 1 Hb-A, S and C Genotypes AA AS Anemia SS AC CS Yes Yes No No No (Severe) (Mild) CC NO Malarial No Yes Resistance Yes No Yes Yes Viability No Malaria 0.2 1 0.7 1 1 1 The A and S Alleles Define An Autosomal Recessive Genetic Disease: Selection Will Insure it is Rare But Difficult to Eliminate in a Random Mating Population. Hb-A, S and C Genotypes AA AS Anemia SS AC CS Yes Yes No No No (Severe) (Mild) CC NO Malarial No Yes Resistance Yes No Yes Yes Viability No Malaria 0.2 1 0.7 1 1 1 The A and C Alleles Define A Set of Neutral Alleles in a Non-malarial Environment: Their Frequencies Are Determined by Genetic Drift and Mutation. Hb-A, S and C Genotypes AA AS Anemia SS AC CS Yes Yes No No No (Severe) (Mild) CC NO Malarial No Yes Resistance Yes No Yes Yes Viability No Malaria 1 1 0.2 1 0.7 1 Viability Malaria 0.9 1 0.2 0.9 0.7 1.3 Observed Relative Viabilities In Western Tropical Africa Hb-A, S and C • CC is the Fittest Genotype By Far • If Natural Selection is “Survival of the Fittest”, Then Natural Selection Should Increase the Frequency of the C allele and the CC Genotype. • Contrary to Rumor, Natural Selection is Not “Survival of the Fittest.” • Natural Selection Is Heritable Variation in Fitness, so Think Like A Gamete: Which Gamete Has the Highest Average Excess of Fitness? Initial Gene Pool Before Malaria pS=.005 pC=.005 A pA = 0.99 Initial Ave. Fitness After Transition to Malaysian Agricultural Complex pS=.005 pC=.005 A pA = 0.99 Under Random Mating, the Mean Phenotype = W = 0.901 Initial Phenotypes After Transition to Malaysian Agricultural Complex pS=.005 pC=.005 A pA = 0.99 Genotypes AA AS SS AC CS CC Viability Malaria 0.9 1 0.2 0.9 0.7 1.3 Genotypic Deviation -.001 .099 -.701 -.001 -.201 .399 (W = 0.901) Initial Phenotypes After Transition to Malaysian Agricultural Complex Genotypes AA AS SS AC CS CC Viability Malaria 0.9 1 0.2 0.9 0.7 1.3 Genotypic Deviation -.001 .099 -.701 -.001 -.201 .399 (W = 0.901) aA = -0.0005 aS = 0.0935 aC = 0.0000 Initial Phenotypes After Transition to Malaysian Agricultural Complex aA = -0.0005 aS = 0.0935 aC = 0.0000 The Initial Adaptive Response To A Malarial Environment Mediated By Natural Selection Is To Decrease A, Increase S, and Leave C The Same px = px(ax)/W) Gene Pool After Several Generations of Selection Under A Malarial Environment A pA = 0.95 W = 0.907 S pS = 0.045 pC = 0.005 Gene Pool After Several Generations of Selection Under A Malarial Environment pC=.005 A pA = 0.95 S .045 Genotypes AA AS SS AC CS CC Viability Malaria 0.9 1 0.2 0.9 0.7 1.3 Genotypic Deviation -.007 .093 -.707 -.007 -.207 .393 (W = 0.907) Gene Pool After Several Generations of Selection Under A Malarial Environment aA = -0.003 aS = 0.055 aC = -0.014 After the Initial Adaptive Response To A Malarial Environment, Natural Selection Continues to Decrease A, Increase S, but Now It Also Decreases C Because aC= -0.014. Gene Pool After Several Generations of Selection Under A pC 0 Malarial Environment A pA 1-pS Genotypes Viability Malaria S pS AA AS SS AC CS CC 0.9 1 0.2 0.9 0.7 1.3 As pS increases in frequency, W increases and these Genotypic Deviations Become Increasingly Negative. Therefore, Natural Selection Eliminates the C Allele. A Selective Equilibrium Will Only Occur When p = 0 Under Natural Selection For All Alleles. A pA = 1-pS Genotypes Viability Malaria S pS AA AS SS 0.9 1 0.2 aA = (1-pS)(0.9-W)+pS(1-W) = 0 = aS = (1-pS)(1-W)+pS(0.2-W) A Selective Equilibrium Will Only Occur When p = 0 Under Natural Selection For All Alleles. A pA = 1-pS S pS aA = (1-pS)(0.9-W)+pS(1-W) = aS = (1-pS)(1-W)+pS(0.2-W) (1-pS)(0.9)+pS(1) = (1-pS)(1)+pS(0.2) 0.9+0.1pS = 1-0.8pS 0.9pS = 0.1 pS = 0.1/0.9 = 0.11 So At Equilibrium, pS = 0.11 and pA=0.89 The Equilibrium Allele Frequencies Are Maintained By Natural Selection, Resulting in a Balanced Polymorphism A pA = 0.89 S pS=0.11 The Balance Occurs Because When pS < 0.11, aS > 0 (malarial resistance dominates the average excess) And When pS > 0.11, aS < 0 (anemia dominates the average excess) The Equilibrium A pA = 0.89 AA 0.79 WAA = 0.9 S pS=0.11 AS 0.20 SS 0.01 WAS = 1 WSS =0.2 At Equilibrium, There is Genotypic Variation in Fitness (Broad-Sense Heritability), but No Heritability (Average Excesses = 0). Adaptation By Natural Selection Depends Upon History: Which Mutations Are Present and Their Frequencies. The course of adaptation is always constrained by the available genetic variation and proceeds until there is no heritability of fitness. Two Possible Responses to Malaria A pA p S 0 pC 0 A pA = 0.89 S pS=.11 C pC = 1 1. The Fittest Genotype is Eliminated. 1. The Fittest Genotype is Fixed. 2. Average Fitness goes from .9 to .91. 2. Average Fitness goes from .9 to 1.3. 3. 20% of the individuals have a relative viability of 1 and 80% have either anemia or malarial susceptibility. 3. 100% of the individuals have a relative viability of 1.3 and none have anemia nor malarial susceptibility. Two Possible Responses to Malaria A pA p S 0 pC 0 A pA = 0.89 S pS=.11 C pC = 1 With One Exception 1. The Fittest Genotype is Eliminated. 1. The Fittest Genotype is Fixed. 2. Average Fitness goes from .9 to .91. 2. Average Fitness goes from .9 to 1.3. 3. 20% of the individuals have a relative viability of 1 and 80% have either anemia or malarial susceptibility. 3. 100% of the individuals have a relative viability of 1.3 and none have anemia nor malarial susceptibility. Hb-A, S and C Genotypes AA AS SS AC CS CC Viability No Malaria 0.2 1 0.7 1 1 1 S is a recessive, deleterious allele relative to A, so natural selection in the pre-Malarial environment will keep it rare (no h2). C is a neutral allele relative to A, so sometimes the C allele will drift to high frequencies relative to the A allele. Suppose There Was A Deme With This Gene Pool Before The Malaysian Agricultural Complex A pA = 0.95 pS=.005 Such a gene pool is likely to evolve in the pre-malarial environment because of the neutrality of A and C relative to each other. C .045 Initial Phenotypes After Transition to Malaysian Agricultural Complex Genotypes AA AS SS AC CS CC Viability Malaria 0.9 1 0.2 0.9 0.7 1.3 Genotypic Deviation -.002 .098 -.702 -.002 -.202 .398 (W = 0.902) aA = -0.001 aS = 0.081 aC = 0.015 The Initial Adaptive Response To A Malarial Environment Is To Increase The Frequency of The S and C Alleles. Gene Pool After Several Generations of Selection Under A Malarial Environment A pA = 0.78 .05 C 0.17 S Genotypes AA AS SS AC CS CC Viability Malaria 0.9 1 0.2 0.9 0.7 1.3 Genotypic Deviation (W = 0.914) -.01 .09 -.71 -.01 -.21 .39 Gene Pool After Several Generations of Selection Under A Malarial Environment aA = -0.009 aS = -0.005 aC = 0.044 After the Initial Adaptive Response To A Malarial Environment, Natural Selection Continues to Decrease A, Increase C, but Now It Also Decreases S Because aS= -0.005. A Negative Correlation Exists Between the Frequencies of the S and C alleles in Malarial Regions in Africa 0.25 0.20 o.15 C Allele Frequency 0.10 o.o5 o.o o.o o.o5 0.10 S Allele Frequency in 72 West African Populations o.15 Even uniform selective pressures produce divergent adaptive responses because selection operates upon variation whose creation and initial frequencies are profoundly influenced by random factors such as mutation and drift. Although adaptation is often portrayed as “optimizing” individual or population fitness, only gametic fitness is optimized via natural selection. Individuals or demes with the highest fitness are not necessarily favored and can be actively selected against. There are many other ways in which human populations have adapted to malaria; e.g. G-6-PD Deficiency: Plasmodium oxidizes RBC NADPH from the Pentose Phosphate pathway for its metabolism. This results in a deficiency of RBC GSH, most severe in G6PD deficient individuals, leading to peroxide-induced hemolysis which curtails the development of Plasmodium. There are many other ways in which human populations have adapted to malaria; e.g. Thalassemia: Adaptation generally involves many loci with different biochemical, cellular or developmental functions. Therefore, we also need to model natural selection as a polygenic process. The Fundamental Theorem of Natural Selection • Fisher was one of the first to model natural selection as a polygenic process. • Although there are many aspects of his models, the most important results are found in what he termed the “fundamental theorem of natural selection.” x = phenotypic value of some trait for an individual in a population f(x) = the probability distribution that describes the frequencies of x in the population. The mean phenotype is then: xf(x)dx x w(x) = the fitness of those individuals sharing a common phenotypic value x. The mean or average fitness of the population is: w w(x)f(x)dx x w(x)f(x) does not in general define a probability distribution, but w(x)f(x)/ w does integrate to one and defines the probability distribution of the selected individuals. Hence, the mean phenotype of the selected individuals is: s x xw(x)f(x)dx w Let h2 = the heritability of the trait. The response to selection is given by R=h2S where S=(s–), R = (o–), and o is the phenotypic mean of the offspring of the selected parents. When x = w, w(w) = w by definition, and = w. s s w w 2 w w wf(w)dw w w 2 w 2 f(w)dw w w w w 2 w 2 f(w)dw w w 2f(w)dw w 2 f(w)dw w w ww w f(w)dw w 2 2 w 2 2 s S s w 2 w2 w w w 2 w2 w2 w 2 w w Hence, When x = w, the response to selection, R, is . R h 2S a2 2 w 2 w w a2 w Fundamental Theorem of Natural Selection Some Implications of FFTNS • FIRST, natural selection can only operate when there is genetic variation associated with phenotypic variation for fitness in the population. • SECOND, the only fitness effects that influence the response to natural selection are those transmissible through a gamete. • THIRD, the adaptive outcome represents an interaction of fitness variation with population structure. Some Implications of FFTNS • FOURTH, selective equilibria can only occur when all the average excesses and all the average effects are zero; that is, when all gamete’s have the same average fitness impact. Evolution due to natural selection stops only when there is no heritability for fitness. This in turn means that at a selective equilibrium there is no correlation between the fitness of parents and the fitness of their offspring even when there is genetic variance in the phenotype of fitness. The Equilibrium A pA = 0.89 AA 0.79 WAA = 0.9 S pS=0.11 AS 0.20 SS 0.01 WAS = 1 WSS =0.2 At Equilibrium, There is Genotypic Variation in Fitness (Broad-Sense Heritability), but No Heritability (Average Effects = 0). Some Implications of FFTNS • FIFTH, natural selection acts to increase the average fitness of a population on a per generational basis. Because the additive genetic variation must be greater than or equal to zero, w ≥ 0 under natural selection. Because average fitness can only increase or stay the same under natural selection, the selective equilibria discussed under point four must always correspond to an average fitness local optimum. Wright’s Concept of An Adaptive Surface or Landscape AA AS SS WAA = 0.9 WAS = 1 WSS=0.2 AverageFitnes s 1.0 AverageFitnes s 0.92 0.8 0.91 0.6 0.90 0.4 0.89 0.2 p 0.0 0.2 0.4 0.6 Frequency of S 0.8 1.0 p 0.00 0.05 0.10 Frequency of S 0.15 0.20 Some Implications of FFTNS • SIXTH, natural selection only takes populations to local adaptive solutions and not necessarily to the adaptive state with the highest average fitness, and indeed may operate to prevent an adaptive state with higher average fitness from evolving. Wright’s Concept of An Adaptive Surface or Landscape AA Aa aa WAA = 1 WAa = 0.5 Waa=0.9 AverageFitnes s 1.0 0.9 0.8 0.7 p 0.0 0.2 0.4 0.6 Frequency of A 0.8 1.0 Genotypes AA AS SS AC CS CC Viability Malaria 0.9 1 0.2 0.9 0.7 1.3 C A 1.25 0.91 S 1 0.905 w C 0.9 0.895 A 0.89 0.75 S 0.5 A C 0.25 A pA pS pC C pS pA pC S S Some Implications of FFTNS • SEVENTH, natural selection generally does not optimize, even in a local sense, any individual trait other than fitness itself, even if the trait contributes to fitness in a positive fashion. w 0) at a local peak, let feq(x) = Given a selective equilibrium (= the phenotypic distribution of the trait at equilibrium. Then, the average fitness and average trait at equilibrium is: weq xeq x w(x)feq (x)dx xf (x)dx eq x xeq is the “optimal” value of trait X only if weq w(x eq ) Use Taylor’s theorem to expand w(x) around x eq: w(x) w(xeq ) w'(x eq )(x x eq ) 1 2 w''(x eq )(x x eq )2 Take the average value of both sides of the Taylor’s Series approximation by integrating across the equilibrium probability distribution of the trait: weq w(xeq ) x feq (x)dx w(xeq ) x x xeq feq (x)dx 12w(x eq ) x x xeq feq (x)dx 2 2 weq w(xeq ) 12 w(x ) eq eq(x) xeq is an optimal value of trait X that maximizes w(x) when: 1. the trait has no phenotypic variance at equilibrium [2eq(x) = 0], or 2. the trait is related to fitness in a strictly linear fashion at equilibrium [w”( xeq) = 0] Some Implications of FFTNS • EIGHTH, the process of adaptation can result in the evolution of some seemingly non-adaptive traits. In general, many traits contribute to fitness, not just one. Consider the case in which two traits, say X and Y, contribute to fitness such that w(x,y) is the fitness of those individuals with trait values x and y for the two traits respectively. Then, the two-dimensional requirement for optimality of both traits is: 2w(x eq , y eq ) 2 2w(x eq , y eq ) 2w(x eq , y eq ) 2 eq (x) 2 Coveq (x, y) eq (y) 0 2 2 x xy y E.g., many human populations have adapted to malaria by increasing the frequency of the trait of hemolytic anemia. Here, natural selection favors the increase of a highly deleterious trait. Such cases are common because of pleiotropy, and indeed most of the people who die or suffer from genetic disease do so because natural selection favored the genes despite one or more pleiotropic deleterious traits. Some Implications of FFTNS • NINTH, the course of adaptive evolution is strongly influenced by genetic architecture. 0.91 0.905 w C w C 0.9 0.895 A 0.91 0.9 0.895 A 0.89 0.89 S A S C pS pA 0.905 A C pS pA pC pC S C recessive to A for malarial resistance S C with 4% dominance to A for malarial resistance Common theme? p = paA/W w 2 a w The Course of Adaptive Evolution Is Determined By the Phenotypic Effects Assigned to GAMETES, not individuals!