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2: Enzyme Action Lesson Objectives: • • • Why are enzymes and their structure important. (AO1: D) Use the pictures to describe the lock and key and induced fit model of enzymes (AO2: C) Use your knowledge of enzymes to explain the effect of changing conditions on the enzyme action (AO2 and AO3: A) Homework: Use your knowledge of enzymes to explain the following: - Heating food before being canned - Foods preserved in vinegar Keywords: substrate, enzyme, enzyme-substrate complex, active site, complementary EXAM TIP: When answering questions on enzymes, always use the words ‘enzyme-substrate complex’ and ‘active site’, worth 1 mark. Quick recap of proteins. 1) Primary structure = long chain of amino acids forming a polypeptide. 2) Secondary structure = hydrogen bonds between O in carboxyl and H in amino ground cause helix or corrugated shape to form. 3) Tertiary = ionic, more hydrogen or disulphide bonds cause FOLDING into 3d shape (allowing it to do a job). 4) Quaternary = more than one peptide bond together and/or a prosthetic group (non peptide). Enzymes are tertiary or quaternary (globular) proteins. What do enzymes do? Sucrose + water glucose + fructose. • The above is a simple reaction that happens in nature. • For the reaction to happen, some energy needs to be put in to start it off. The ACTIVATION ENERGY. • If left to work on its own in a human body or plant etc. not many reactions would have enough energy to start in the cool temperatures inside living organisms and the reactions would be too slow. • Enzymes make the activation energy lower and thus make reactions happen much faster. Activation energy. The red line is how much energy would be needed to get the reaction started on its own (no enzymes). The enzyme reduces the activation energy to the green line. The lower energy allows the reaction to happen inside the body/organism at a lower temperature and at a faster rate. HOW USEFUL! Tip – without enzymes we would not be able to function properly. Enzyme Structure AO1 • 3-D structure - the amino acid sequence causes bonds to form and the polypeptide to fold into a 3D shape. • The 3D shape causes the enzyme to form an active site - this is a “hole” that forms and is able to bind onto other molecules by forming temporary bonds between them. • The molecule that the enzyme binds to is called a substrate. • When the enzyme binds to the substrate it is called an enzymesubstrate complex. The two enzyme models. 1) Lock and Key 2) Induced fit. Enzyme Action AO2 Earliest model - LOCK AND KEY MODEL • • • Enzymes have rigid and set active site shapes. These bind specifically to the substrate. MODEL LIMITATION – scientists noticed other molecules binding to the enzyme causing it to change shape and activity of the enzyme. This lead to the idea of the second model (induced fit) • Each enzyme only catalyses one type of substrate, this means that enzymes are s___________________ . Explain why changing one of the amino acid group can prevent the enzyme from working? (Think bonds and folding)(AO2: B) • Enzyme Action AO2 Current model INDUCED FIT MODEL • This is slightly different to the previous model. • INITIALLY the enzyme active site and the substrate are NOT COMPLIMENTARY in shape. • When an enzyme and substrate come close to each other they interact. • This interaction causes the active site to change shape and become a COMPLIMENTARY and FUNCTIONAL active site. An INDUCED FIT. (ie. The enzyme is flexible and moulds itself around the substrate). • The enzyme binding to the substrate causes substrate bonds to bend and weaken, this is why the activation energy gets lower. Enzyme Action AO1 For an enzyme to work it must: 1. Come into contact with the substrate 2. Have an active site which is complementary to the substrate Following factors can affect the rate of reaction: 1. Temperature 2. pH 3. Substrate concentration 4. Competitive and non-competitive inhibitors THESE WILL BE DISCUSSED IN CLASS! Enzyme Inhibition AO2 COMPETITIVE INHIBITORS • Competitor inhibitor has the same molecular shape as the substrate, so they compete with the substrate to bind to the active site. • The rate of reaction depends on the concentration of the substrate and the inhibitor. • Substrate concentration is high then the effect of inhibitor is reduced. • When competitive inhibitor leave the place another substrate molecule takes the place. Enzyme Inhibition AO2 NON-COMPETITIVE INHIBITOR • Binds to the non-active site and alters the shape. • The substrate molecule can no longer bind, reducing the rate of reaction.