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Lecture 11: Review Debye Huckel Theory Galvanic Cells Today Galvanic Cells Application of thermodynamics to biochemistry o Thermodynamics of metabolism o Biological Redox Reactions o DNA formation Galvanic Cells Free energy associated with an electron transfer reaction G w Q.E nFE Since ΔG depends on temperature, we can evaluate the entropy and enthalpy associated with the process as follows: G nFE E G S nF T T P E H G TS nF E T T A simplest example of electron transfer process is oxidationreduction. Consider following reduction process: Li e Li This process is thermodynamically not favored. We find the electrical voltage at which this reaction can be driven is at 3.045Volts, which is termed as the reduction potential. Since process does not occur spontaneously we assign a negative sign to it. Table 4.1 depicts a series of reduction potentials. As in the case of free energy change involved in chemical reactions, we can use these potentials to determine the free energy involved in chemical oxidation/reduction. Cu 2 2e Cu 0 E 0 0.337 Zn 0 Zn 2 2e E 0 0.7628 Cu 2 Zn Zn 2 Cu 0 ERe action 1.100V G nFE 212kJ Thus, the reaction will take place spontaneously. Galvanic Cells Consider an example of pair of redox reactions coupled to form an electrochemical cell. At one electrode H2 gas is oxidized to yield H+ ions while at other electrode O2 gas is reduced to provide OH- ion. Hydrogen gas gives its electron to the electrode on the left and oxygen gas receives this extra electron. Thus, a voltage difference develops across the electrode, which can be calculated using the net sum of the free energy change involved in the reaction between hydrogen and oxygen. The exact reverse of the process would involve application of potential difference between the two electrodes, sufficiently strong to cause an evolution H2 at cathode and O2 at anode. The first is an example of battery second is an example of electrolysis. Concentration dependence of E Following our usual prescription for concentration dependence of Gibbs free energy, we can derive one of the most famous equations in electrochemistry, the Nernst equation. G G 0 RT ln Q RT E E0 ln Q u sin g G nFE nF for aA bB cC dD aCc aDd RT aCc aDd 0 Q a b E E ln a b a A aB nF a A aB for Cu / Zn reaction 1 1 1 a a a 2 RT . 059 Cu 0 0 Zn Zn 2 EE ln 1 1 E log 1 nF aCu a n 2 Zn aCu 2 Here, I have set the activity of pure metals to unity and converted ln to log. Thus, E measurements as a function of Zn+2 and Cu+2 concentration will allow us to determine E0 hence the reaction constant since G 0 nFE 0 RT ln( K eq ) And from the slope we can determine n the number of electrons transferred. Conversely if we know n, E0, we can determine the activity coefficients. Thermodynamics of metabolism As we have learned, the complete oxidation of glucose by oxygen is a process involving G=-2878kJ/mole. However, in biological systems the process is controlled Step 1: If we were to calculate the G for the first step, in absence of hydrolysis of ATP to form ADP, the reaction would have positive G. Since ATP H 2O ADP Phosphate G 31kJ / M So the reaction is made possible by coupling this hydrolysis reaction with the glucose phosphorylation. This coupling involves a use of hexokinase enzyme, which also speeds up the rate of the reaction. Step 2: Note that G for the conversion of glucose to fructose phosphate is positive, yet the reaction is possible if the concentration of the product is low: G G 0 RT ln Q [ fructose P] G RT ln K eq RT ln [Glu cos e P] Thus if the ratio is low, the ln term will make a negative contribution to total G making it possible to synthesize fructose-6-phosphate. Step 3: Similar to Step 1. Step 4: Here, we see that the reaction is bit more complex in that two products are formed and can interconvert with positive G. The fact that glyceraldehyde is consumed in subsequent reactions drives its concentration to sufficiently low levels; which makes the interconversion thermodynamically favored. The overall process has G=80.6 kJ, implying a large chemical potential of glucose is effectively trapped in puruvate and NADH. The latter can, under conditions of high muscular energy demand, convert pyruvate to lactate with release of –25kJ of free energy. Biological Oxidation/Reduction processes Consider following reactions involving reduction of NAD(+). Clearly, not a spontaneous process but driven by demand. But oxidation of NADH can result in formation of ATP in Mitochondria. 2 NADH 2H O2 2 NAD 2H 2 O However, the actual process of oxidation is complex involving three membrane-bound proteins: Step 2 Step 3. DNA pairing Binary interactions between nuclear base pairs Ionic Effects Protein-Nucleic Acid Binding The structure of DNA contains negatively charged phosphate groups in its backbone. Na(+) ions in cells partially neutralize this charge by binding to these groups. Let the fraction of PO4 bound by Na ions be ψ (For DNA it is 0.88). When a protein binds to the nucleic acid, it replaces these bound counterions (n/mole). Then we can write: Hence by studying K(obs) as a function of Na ion concentration allows a determination of n, the number of PO4 groups on the DNA, the protein interacts with!