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GEL ELECTROPHORESIS LAB READING: Read the explanation of Gel Electrophoresis. Explain the technology of gel electrophoresis? BACKGROUND. What is Gel Electrophoresis used for? What is a DNA fingerprint? What does CODIS look at? PROBLEM: Purpose/ Prediction: Explain how comparing DNA fingerprints can help to identify a person who has committed a crime? Hypothesis: (this answers the purpose) EXPLORE: Materials: PROCEDURE: DATA: In the table below record the estimated length in base pairs (bp) of the DNA fragments found in the samples from the victim, the suspects, and the evidence. Estimate the number of base pairs by comparing each band to the marker DNA bands. Band Marker DNA length bp 1 2 3 4 5 6 23,130 9,416 6,557 4,361 2,322 2,027 Victim DNA bp ? ? ? Suspect 1 DNA bp Suspect 2 DNA bp Evidence DNA bp 9,416 ? ? ? ? ? ? ? ? ? ? Analyze and Conclude: 1. EVALUATE Does the DNA found on the hair match suspect 1 or suspect 2? Explain how you know. 2. ANALYZE Why do a series of bands appear on the gel? 3. IDENTIFY CAUSE Why is the largest DNA fragment band found closest to the well in which it was placed? 4. INFER What is true of the DNA fragment band closest to the positive end of the gel? 5. PREDICT What would happen if the electrodes were plugged into the wrong outlets? 6. APPLY Do you think DNA fingerprinting is more conclusive when proving a person’s innocence or their guilt? Gel electrophoresis is a procedure that separates molecules on the basis of their rate of movement through a gel under the influence of an electrical field. The direction of movement is affected by the charge of the molecules, and the rate of movement is affected by their size and shape, the density of the gel, and the strength of the electrical field. DNA is a negatively charged molecule, so it will move toward the positive pole of the gel when a current is applied. When DNA has been cut by restriction enzymes, the different-sized fragments will migrate at different rates. Because the smallest fragments move the most quickly, they will migrate the farthest during the time the current is on. Keep in mind that the length of each fragm ent is meas ured in numb er of DNA base pairs. Procedures: 1. Put DNA strands into the different wells in the Gel. 2.