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177 A Genetic-Based Evaluation of the Principal Tissue Reservoir for Group A Streptococci Isolated from Normally Sterile Sites Therese R. Fiorentino, Bernard Beall, Patricia Mshar, and Debra E. Bessen Department of Epidemiology and Public Health, Yale University School of Medicine, New Haven, and State of Connecticut Department of Public Health, Hartford, Connecticut; Childhood and Respiratory Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia The primary sites of infection and principal reservoirs for transmission of group A streptococci are the nasopharyngeal mucosa and the impetigo lesion. However, pharyngitis and impetigo are rarely observed prior to invasive disease, and, thus, the origin of invasive strains is largely unknown. As part of an active surveillance program, group A streptococci were obtained from normally sterile tissue sites of Connecticut residents during a 6-month period. Organisms were analyzed for genetic markers that distinguish between strains that use the nasopharynx versus an impetiginous lesion as their primary site for infection. The nasopharyngeal marker was observed for most sterile-site isolates, suggesting that the upper respiratory tract is the principal reservoir from which organisms causing invasive disease are disseminated. Genotypic analyses of sterile-site isolates support the view that additional factors, aside from a recent emergence of a few virulent clones, are important contributors to invasive group A streptococcal disease. The overall incidence of severe invasive group A streptococcal infection has likely undergone a dramatic increase in several parts of the world since the mid-1980s [1 – 12]. Group A streptococci are among the most common bacterial pathogens afflicting humans, and disease usually takes the form of a non – life-threatening and self-limiting pharyngitis or superficial impetigo. The nasopharyngeal mucosa and impetiginous lesion of the human host are the two principal tissue reservoirs for the maintenance and transmission of group A streptococci. However, in invasive group A streptococcal disease, the portal of entry into the host is often not known [2, 4, 8, 9, 11]. The concept of distinct groups of throat and skin (i.e., impetigo) strains of group A streptococci is well recognized [13 – 15]. A recent study [16] showed that populations of nasopharyngeal- and impetigo-derived group A streptococci are genetically distinct in the portion of the chromosome (emm gene region) that encodes for the determinants of a widely used serologic typing scheme (M proteins). Although ú80 different M serotypes have been identified, the arrangement of emm and Received 7 November 1996; revised 6 February 1997. Presented in part: XIII Lancefield International Symposium on Streptococci and Streptococcal Diseases, Paris, September 1996 (abstract L26). Human experimentation guidelines of the state of Connecticut were followed in the conduct of clinical research. Financial support: CDC – State of Connecticut Department of Public Health Emerging Infections Program, American Heart Association (D.E.B. is an Established Investigator), Donaghue Medical Research Foundation, and National Institutes of Health (AI-28944). Reprints or correspondence: Dr. Debra Bessen, Yale University School of Medicine, 333 Cedar St., Box 208034, Dept. of Epidemiology and Public Health, New Haven, CT 06520. The Journal of Infectious Diseases 1997;176:177–82 q 1997 by The University of Chicago. All rights reserved. 0022–1899/97/7601–0022$02.00 / 9d2b$$jy21 05-30-97 17:28:01 jinfa emm-like genes on the chromosome takes the form of only five major patterns [17, 18]. The objective of this study is to use the tissue-related emm gene patterns as markers for predicting the principal reservoir for group A streptococcal strains isolated from normally sterile tissue sites. Materials and Methods Case reporting and collection of bacterial isolates. Connecticut is one of four states participating in an Emerging Infections Program (EIP) through a cooperative agreement with the Centers for Disease Control and Prevention (CDC). One of the projects of the program involves active population-based laboratory surveillance for invasive disease caused by several bacterial pathogens, including group A streptococci. In January 1995, invasive group A streptococcal disease was made a reportable disease in the state of Connecticut. As a result, hospital laboratories were required to send group A streptococcal isolates obtained from normally sterile tissue sites to the State of Connecticut Department of Public Health. In March 1995, active laboratory surveillance for invasive group A streptococcal disease was implemented in all 35 acutecare hospital laboratories in Connecticut. On a monthly basis, hospital microbiologists completed a form listing all patients having invasive group A streptococcal disease. If a report form was not received, the hospital microbiologist was contacted by telephone for case information. Clinical information was obtained from the patient’s medical record. Diagnoses of streptococcal toxic shock syndrome (Strep TSS) met the case definition established by the CDC [19]. During the 6-month survey period for this study (1 March through 31 August 1995), group A streptococcal isolates obtained from sterile sites in 64 Connecticut state residents were sent to the State of Connecticut Department of Public Health, and all 64 isolates are included in this report. Sterile-site isolates were obtained from blood, normally sterile tissue fluids (e.g., synovial, pleural), UC: J Infect 178 Fiorentino et al. Figure 1. Chromosomal arrangement of emm and emm-like genes. emm and emm-like genes fall into 1 of 4 major subfamilies (SF) defined by nucleotide sequence differences in portion of emm or emmlike gene encoding peptidoglycan-spanning domain [17]. ú99% of group A streptococcal strains examined have 1, 2, or 3 distinct emm or emm-like genes arranged in 1 of 5 chromosomal patterns (A – E) shown. Nomenclature shown for each of 3 emm and emm-like gene positions (mrp, emm, enn) within emm chromosomal region is that proposed by Whatmore et al. [21]. or surgical tissue biopsies. Isolates were collected from throughout the state; the three most populous counties each accounted for 25%–29% of the isolates, and the remaining five counties shared 17% of the total. A retrospective audit of hospital microbiology laboratories uncovered 12 additional cases of group A streptococcal invasive disease. In addition, isolates derived from normally sterile tissue sites of 9 patients were never sent to the state laboratory; since these 21 bacterial isolates were not available for molecular analyses, those cases were excluded from the study. T antigen serologic typing was performed by standard methods. Strains associated with recent cases of severe invasive disease from elsewhere in the United States (i.e., strains with an MGAS designation), which were previously evaluated by multilocus enzyme electrophoresis [20], were provided by James Musser (Baylor University, Houston). Determination of emm chromosomal patterns. The relative arrangement of emm genes on the chromosome was determined as previously described [16–18] (figure 1). Chromosomal DNA was prepared from overnight cultures of group A streptococci and used as a template for a series of polymerase chain reaction (PCR) amplifications. Subfamily-specific primers were paired with a second primer capable of hybridizing to DNA within the emm chromosomal region of at least some strains, and a series of overlapping PCR amplifications were performed using various primer pair combinations. Agarose gel electrophoresis was used to determine the presence or absence and molecular size of reaction products, and a linear map of the emm chromosomal region was constructed based on the data [17, 18]. The arrangement of emm genes within each bacterial strain was scored as pattern A, B, or C, pattern D, or pattern E (figure 1). PCR amplifications included Taq DNA polymerase (Promega, Madison, WI, or Boehringer Mannheim, Indianapolis), the manufacturer’s buffer (containing 1.0 mM MgCl2), and 0.8 mM of each primer. Thirty cycles were performed, / 9d2b$$jy21 05-30-97 17:28:01 jinfa JID 1997;176 (July) with an anneal temperature of 557C and an extension time of 1– 3 min, depending on the sizes of the expected products. Arbitrary-primed PCR, or random-amplified polymorphic DNA (RAPD). Chromosomal DNA was purified and PCR amplifications were done as described above, with the following modification: A single 10-mer oligonucleotide primer (p17; 5*-GATCTGACAC-3*) was used at a concentration of 2.0 mM and MgCl2 was included at 2.5 mM [22]. Thermal cycling was performed as described [22]: Cycles 1–5 were run at 947C for 30 s, 377C for 2 min, and 727C for 5 min, followed by cycles 6–40 at 947C for 30 s, 377C for 1 min, and 727C for 1.5 min. Gels containing 1.0% ME agarose (FMC BioProducts, Rockland, ME) were used to separate reaction products. For all DNA templates that initially yielded only a few or no bands, template DNA was tested at reduced concentrations; for all strains, complex and reproducible banding patterns were obtained. Each DNA template was tested for PCR amplification a minimum of three times; experimental repeats helped to reduce any ambiguities arising from variations in the intensity of certain bands. Each RAPD profile is represented by isolates that are identical in bands migrating between 0.4 and 2.4 kb. All RAPD analyses were completed at Yale University without prior knowledge of the emm nucleotide sequence and T antigen serotyping data, which were determined at CDC. Detection of the speA gene. PCR amplification of chromosomal DNA was done using primers 5*-ATGGAAAACAATAAAAAAGTATTG-3* (forward) and 5*-TTACTTGGTTGTTAGGTAGACTTC-3* (reverse), corresponding to amino acids 1–8 and 245 through stop codon, respectively, of the published speA sequence [23]. Conditions used for PCR amplification for speA were the same as those used for emm chromosomal mapping. Emm gene sequencing. Nucleotide sequence determinations were made for the 5* ends of emm genes as previously described [24], except that primer emmseq2 (5*-TATTCGCTTAGAAAATTAAAACAGG-3*) was used at an annealing temperature of 557C. For all isolates, including those with multiple emm genes, the gene amplified with primers 1 and 2 [21] and used for nucleotide sequencing is that designated ‘‘emm’’ in figure 1; the gene occupying the central position within the emm chromosomal region most likely represents the gene encoding for the principal serologic determinant (M type) [21, 25]. Sequences were designated as emm types on the basis of identities or near identities to emm genes of the standard M typing strains; the criterion was nucleotide sequence identity §95% in the first 160 bases of the 5* end when compared with Genbank sequences as defined in [24]. Results Incidence of invasive disease. A total of 64 sterile-site isolates of group A streptococci were collected by the State of Connecticut Department of Public Health between 1 March and 31 August 1995. Each sterile-site isolate was obtained from a different Connecticut resident. On the basis of 1990 census data [26] and including the 21 additional cases for which no organism was available for molecular analysis, the estimated annual incidence of invasive group A streptococcal disease in 1995 was 5.17/100,000 residents. Distribution of genetic markers for nasopharyngeal versus impetigo reservoirs. In severe invasive disease, the portal of UC: J Infect JID 1997;176 (July) Tissue Reservoir of Invasive Streptococci entry for the group A streptococcus is not always obvious. We used the emm chromosomal patterns (figure 1) as genetic markers for predicting the principal tissue reservoir for group A streptococci isolated from normally sterile sites. In a previous study, in which epidemiologically unrelated organisms derived from only the nasopharyngeal mucosa or impetigo lesion were evaluated, 96% of isolates displaying emm chromosomal patterns A, B, or C were derived from the nasopharyngeal mucosa, whereas 86% of pattern D strains were isolated from impetigo lesions [16]. The nasopharyngeal and impetigo isolates were collected from throughout the world over a period of ú50 years. In the Connecticut population-based study, õ2% of the sterile-site isolates exhibited emm chromosomal pattern D (table 1), a genetic marker for an impetigo reservoir. In striking contrast, 70% of the sterile-site isolates displayed emm chromosomal patterns A, B, or C, suggesting that at least two-thirds of invasive infections were caused by strains that principally reside in the throat. Pattern E strains, which as a group have no clear-cut tissue site preference [16], constitute the remaining 28% of the Connecticut isolates. The overall distribution of emm chromosomal patterns among the sterile-site isolates from Connecticut closely paralleled the distribution observed for epidemiologically unrelated nasopharyngeal isolates and was significantly different (P õ .001, x2 analysis) from that exhibited by impetigo-derived strains (figure 2). Clinical correlates. emm chromosomal patterns of group A streptococci were analyzed for correlations with both the human tissue site from which each strain was isolated and disease pathology. All isolates associated with Strep TSS or necrotizing fasciitis (or both) displayed emm chromosomal patterns A – C (table 2). Thus, emm chromosomal patterns A – C strains are associated with the more severe forms of group A streptococcal invasive disease in the Connecticut population. All of the Strep TSS – associated bacteria and 6 of the 7 necrotizing fasciitis – associated organisms had a detectable speA gene. This result confirms previous studies demonstrating a high correlation between the presence of speA and Strep TSS [2, 20, 27, 28]. Overall, 33 of the isolates (52%) harbored the bacteriophage-borne speA gene, and of these, all were represented by emm chromosomal patterns A – C (table 1). Blood isolates comprised 43 (67%) of the 64 isolates, and no significant difference was noted between emm patterns A – C and emm pattern E strains in terms of their association with bacteremia (table 2). Extent of genetic diversity. The extent of diversity among group A streptococci isolated from Connecticut residents was ascertained by a combination of three methods (table 1): arbitrary-primed PCR (RAPD), nucleotide sequence determination of the 5* portion of the central emm gene (defined in figure 1), and serologic typing of the T antigen. It is important to note that analysis of all RAPD profiles was completed at Yale University without any prior knowledge of the data on emm gene nucleotide sequencing and T serotyping, which was performed at the / 9d2b$$jy21 05-30-97 17:28:01 jinfa 179 Table 1. Genotypic analysis of 64 isolates of group A streptococci derived from normally sterile tissue sites — Connecticut residents, (March – August 1995). RAPD* profile emm patterns A – C 1‡ 2 3 4§x 5 6 6Ø 7 8 9 10 11 emm pattern D 12 emm pattern E** 13†† 14 15 15 15 16 17 18 19 20 21 22 23 24 25 26 Emm gene sequence† T type Presence or absence of speA No. of strains represented 1 3 3 3 3 12 1 6 3 5 ND 18 1 3 3 3 3 11/12 1 6 NT NT ND NT / / / / 0 0 0 / 0 0 0 / 18 3 2 3 4 4 1 6 1 1 1 1 80 14 0 1 28 28 11 11/12 13 13 3/13/B 13 11 11 25 25 3 2 4 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 28 28 pt4245 pt4245 77 13 13 73 11 78 75 75 st2346‡‡ 2 4 59 NOTE. RAPD Å random amplified polymorphic DNA; NT Å not typeable; ND Å not determined. * Profiles 1 – 26 differ by §1 bands that migrate between 0.4- and 2.4-kb molecular size markers. † All emm1 isolates display sequence identities of §99.5% to Genbank accession no. U11940 over 5* end 231-base overlap, with 1 exception wherein 3-base deletion is noted. Similarly, all emm3 isolates display sequence identities of §99% to Genbank accession no. U11945 over 5* end 243-base overlap. ‡ Two 18 RAPD1 isolates were not evaluated for either emm type or T type. § One strain from each of RAPD4 and RAPD5 groups was not evaluated for emm or T type. x Two distinct genotypes were derived from 1 of RAPD4 ‘‘isolates.’’ Second genotype, which displays unique RAPD profile that was not reported, has emm chromosomal pattern that is consistent with data collected at CDC (emm11, T11/12, opacity factor positive). Thus, there is uncertainty as to which genotype caused invasive disease. Ø Isolate is genotypically distinct from RAPD6-emm12-T11/12 isolates according to additional polymerase chain reaction (PCR) analyses of emm chromosomal region (unpublished findings). ** All emm pattern E isolates exhibited opacity factor activity. †† RAPD13 and RAPD14 profiles differ at 2 major bands; however, there are commonalities between RAPD13 and RAPD14 strains in PCR amplification products corresponding to portions of emm chromosomal region. ‡‡ st2346 represents emm type not previously encountered; closest Genbank match is emmpt4245, having 79.4% identity over 286 bp of 5* emm sequence. UC: J Infect 180 Fiorentino et al. JID 1997;176 (July) Figure 2. Distribution of emm chromosomal patterns of sterile-site isolates compared with distribution for strains derived from nasopharynx or impetigo lesion. Sterile-site isolates of group A streptococci (n Å 64) were obtained from Connecticut residents during March – August 1995. Comparison data shown for nasopharyngeal and impetigo isolates were previously reported [16]; vast majority of throat isolates came from cases of uncomplicated pharyngitis or acute rheumatic fever, and impetigo lesions from which bacteria were isolated were typically superficial rather than having deep tissue involvement. CDC. Collectively, the 64 isolates exhibited 26 distinct RAPD profiles. There were 21 unique combinations of emm gene sequence type and T serotype among the 58 strains that were subjected to those evaluations. The RAPD profile representing the most isolates was RAPD1 (n Å 18), and all RAPD1 organisms exhibited emm1/T1. Three previously characterized electrophoretic type (ET) 1 isolates [20] displayed the RAPD1 profile (data not shown); ET1 and ET2 represent 2 clonal groups that likely account for many of the invasive group A streptococci isolated within the past decade [2 – 5, 8 – 10, 20, 29, 30]. Four RAPD profiles (RAPD2 – RAPD5, n Å 12) corresponded with emm3/T3; two of these profiles (RAPD2 and RAPD3) were identical to the RAPD profiles of ET2 strains MGAS157 and MGAS158, respectively. The RAPD2, RAPD4, and RAPD5 profiles each differed from RAPD3 by one or two bands. Since two distinct RAPD profiles fell into a singular ET, and all four of the RAPD2 – RAPD5 Table 2. Clinical correlates of emm chromosomal patterns of group A streptococci isolated from Connecticut residents. No. of isolates associated with each disease Emm chromosomal pattern* Disease A–C Streptococcal toxic shock syndrome Necrotizing fasciitis Bacteremia without focus Cellulitis Bacteremia (total) None of the above† 5 7 11 15 31 6 (11) (16) (24) (33) (69) (13) D 0 0 0 1 1 0 (0) (0) (0) (100) (100) (0) E 0 0 5 4 11 5 (0) (0) (28) (22) (61) (28) Total 5 7 16 20 43 11 NOTE. Nos. in parentheses represent % of isolates within given emm pattern group that are associated with each disease. * Several isolates are associated with ú1 clinical manifestation. Of 64 isolates represented, 45 display emm patterns A – C, 1 displays pattern D, and 18 display pattern E. † Includes isolates associated with focal infections that were derived from pleural fluid (n Å 3), synovial fluid or bursa (n Å 4), lymph node (n Å 1), abscess (n Å 1), burn (n Å 1), muscle tissue (n Å 1). / 9d2b$$jy21 05-30-97 17:28:01 jinfa profiles shared the emm3/T3 type, we presume that isolates of all four profiles are closely related. Thus, as many as 30 of the 64 sterile-site isolates (47%) from Connecticut are genotypically related to clones previously identified as causative agents for a significant proportion of severe invasive group A streptococcal infections [3 – 5, 20]. However, equally important is the finding that the remaining half of the sterile-site isolates displayed extensive genetic diversity. For the 58 strains that were analyzed by all three parameters (RAPD, emm type, and T type), 28 unique combinations are observed. Two RAPD profiles (RAPD1 and RAPD6) corresponded to emm1/T1, whereas four (RAPD2 – RAPD5) were associated with emm3/T3. Two additional sets of strains with identical emm type/T type combinations also had multiple RAPD patterns (RAPD13 and RAPD14, RAPD21 and RAPD22). The data are consistent with a previous study in which RAPD analysis using the same oligonucleotide primer (p17) had a higher discriminatory power than M protein serotyping [22]. In most instances, the strain contents of a given RAPD pattern were homogeneous with regard to the emm type/T type combination. In all cases, every strain displaying a particular RAPD profile was either positive or negative for the speA gene (table 1). On the basis of this double-blind study, it appears that RAPD analysis is a reliable tool for discrimination between group A streptococci of distinct genotypes. Discussion The nasopharyngeal mucosa and impetigo lesion of the human host represent the two principal tissue sites for group A streptococcal infection and transmission. This report compares 3 populations of group A streptococci that are derived from different anatomic sites: normally sterile tissue, nasopharyngeal mucosa, and impetiginous lesion. A comparison of the relative distribution of emm chromosomal patterns among the 3 tissuedefined groups shows that the nasopharyngeal and sterile-site isolates are strikingly similar, whereas the impetigo-derived population is markedly distinct. If emm chromosomal pattern UC: J Infect JID 1997;176 (July) Tissue Reservoir of Invasive Streptococci is a genetic marker for the principal tissue site for group A streptococci, then one can conclude that the nasopharyngeal mucosa is the principal reservoir for strains capable of causing severe invasive disease in Connecticut. We assume that there exists many individuals within the community that harbor in their throats, without any severe ill effects, the same clones that occasionally cause invasive disease [31]. From the throat of a susceptible host, a given organism might undergo hematogenous spread or alternatively, it may gain access to normally sterile tissue via secondary transfer through a break in the skin. Although the relative distribution of emm chromosomal patterns was similar for the sterile site – and nasopharyngealderived populations, the 2 groups differed in a fundamental way: The sterile-site isolates were epidemiologically related, whereas the nasopharyngeal isolates were epidemiologically unrelated. Coupled to this is the fact that the spectrum of M types among the sterile-site versus nasopharyngeal groups is significantly different [16]. Thus, the mode of sampling has no obvious effect on the overall distribution of emm patterns. This finding reinforces the view that there exists biologically important subpopulations of this bacterial species that are genetically distinct in the emm chromosomal region. Whether the sterile-site isolates merely reflect the group A streptococcal clones that are prevalent in Connecticut or whether they comprise a distinct subgroup of strains is not known. Our findings are consistent with several other lines of evidence suggesting that group A streptococcal strains associated with invasive disease reside principally in a throat reservoir within the human population. A small percentage of patients with invasive disease (typically õ20%) present clinically with pharyngitis [2, 4, 8, 9, 11]. One can also argue that many of the M types associated with invasive disease are typical of ‘‘throat’’ types [32], and that invasive disease occurs in communities at times when streptococcal impetigo is uncommon. In a recent study on a single clone of group A streptococci that was responsible for an outbreak of invasive disease in Minnesota, the identical clone was found in association with pharyngitis and asymptomatic throat carriage among other individuals within the same community [33]. The use of genetic markers for predicting the principal tissue reservoir represents a new approach that is well-suited for situations where more direct evidence is difficult to obtain. There is a wide spectrum of diseases having cutaneous involvement that are caused by group A streptococci, including impetigo, ecthyma, erysipelas, and cellulitis [34, 35]. Impetigo is a superficial infection involving the epidermal layer of the skin, and accompanying septicemia is rare. In some instances, a mild untreated case of impetigo can progress to ecthyma, causing lesions to penetrate deeper into the dermis. Cellulitis can arise following a break in the skin, and the infection extends to the subcutaneous tissue; from this site, the bacterium can give rise to systemic infection by spread through the lymphatics and bloodstream. It is generally accepted that group A streptococci giving rise to cellulitis can originate from either a naso- / 9d2b$$jy21 05-30-97 17:28:01 jinfa 181 pharyngeal site or superficial impetigo lesion, whereby the organism is acquired via secondary transfer or from another contact. In a previous study, the majority of isolates obtained from cases of impetigo were derived from superficial lesions; 95% of the impetigo isolates analyzed display emm chromosomal patterns D or E [16]. In contrast to the impetigo-derived strains, 75% of the organisms obtained from Connecticut patients with cellulitis were of emm chromosomal patterns A – C. Furthermore, of the 20 cases of cellulitis, blood isolates were obtained from 65% of the patients. Thus, our findings are consistent with a common clinical course for group A streptococcal cellulitis, whereby bacteria are transferred from the throat to a break in the skin, and deep cutaneous infection leads to bacteremia in some patients. The relatively high association of bacteremia with cellulitis in the Connecticut patients may reflect a unique virulence property of emm1 and emm3 type isolates, which together represent 9 of the 13 bacteremic cases of cellulitis. This prospective survey of invasive group A streptococcal disease is distinct from many other population-based studies in that the active surveillance system guarantees collection of most sterile-site isolates from patients statewide. Furthermore, the temporal and spatial limits are narrowly defined. The finding that almost half of the sterile-site isolates appear to be genetically related to 2 clonal groups (represented by emm types 1 and 3) underscores the contribution of a few virulent clones to the disease burden. Equally striking is the finding that more than half of the isolates display extensive genetic diversity. 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