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DNA - Chapter 12 DO NOW ● True or False? ○ ○ ○ ○ ○ ○ ○ ○ The first cloned animal was a tadpole. You inherit more from your father if you are a boy. Identical twins do NOT have the same DNA. All humans share 75% of their DNA. DNA is in all our cells except for red blood cells Each cell contains 2 meters of DNA DNA is coiled up into 46 chromosomes If you look more like one of your parents, you inherited more DNA from them ○ We share 50% of DNA with a banana DO NOW ● True or False? ○ ○ ○ ○ ○ ○ ○ ○ The first cloned animal was a tadpole. F You inherit more from your father if you are a boy. F Identical twins do NOT have the same DNA. F All humans share 75% of their DNA. F DNA is in all our cells except for red blood cells. T Each cell contains 2 meters of DNA. T DNA is coiled up into 46 chromosomes. T If you look more like one of your parents, you inherited more DNA from them. F ○ We share 50% of DNA with a banana. T Objectives 1. SWBAT extract DNA from a strawberry. 2. SWBAT dissolve the phospholipid bilayer and break up protein chains that bind around the nucleic acid. Objectives ● SWBAT identify the parts of a nucleotide ● SWBAT label the different parts of a DNA molecule. ● SWBAT create their own DNA molecule. DO NOW ● DNA stands for: ● DNA is located: ● The function of DNA is to: DO NOW ● DNA stands for: ○ Deoxyribonucleic acid ● DNA is located: ○ In the nucleus of cells ● The function of DNA is to: ○ Tells the cells how to produce proteins that make you up (Blueprint) DNA Structure A Nucleotide is made of a: ○ 5 carbon sugar (Deoxyribose) ○ Phosphate Group ○ Nitrogen base (adenine, cytosine, guanine, thymine) Nitrogen Bases Nitrogen Bases cont... What pairs up? Adenine - Thymine Cytosine - Guanine How many bonds does each have? DNA Structure DNA Structure ● DNA often is compared to a twisted ladder. ● Rails of the ladder are represented by the alternating deoxyribose and phosphate. ● The pairs of bases (cytosine–guanine or thymine–adenine) form the steps! Nitrogen bases point in Base PairsRungs of the ladder 2 Strands of DNA form a helix Orientation of DNA - Antiparallel ▪ On the top rail, the strand is said to be oriented 5′ to 3′. ▪ The strand on the bottom runs in the opposite direction and is oriented 3′ to 5′. DO NOW: Hint- #1 and 6 refer to the ends of DNA Objectives 1. SWBAT identify the parts of a nucleotide 2. SWBAT create their own strand of DNA using template sugar, phosphate, and bases. Label the parts of the DNA molecule Extra Resources → Click the links History of DNA DNA Structure DO NOW ● Where is DNA located? ● What is the role of DNA in the cell? Objectives 1. SWBAT explain what Chargaff, Franklin, and Watson/Crick discovered. 2. SWBAT create a timeline of the scientists that discovered DNA. 3. SWBAT label parts of the DNA molecule 4. SWBAT describe how a chromosome coils. Discoveries that led to understanding the structure of DNA! Levene - Chargaff - Franklin - Watson & Crick Levene Discovered that DNA is made of nucleotides Erwin Chargaff Chargaff’s rule: C = G and T = A Discovered what base pairs bonded together! Rosalind Franklin ● X-ray Diffraction use of photo 51 ● X-ray diffraction data helped solve the structure of DNA ● Indicated that DNA was a double helix X-Ray Crystallography Watson and Crick Built a model of the double helix that conformed to the others’ research → What their model confirmed was: ● Two outside strands consist of alternating sugar and phosphate molecules ● Cytosine and guanine bases pair with 3 H bonds ● thymine and adenine bases pair with 2 H bonds Ground Breaking Discoveries in Bacterial Transformation Griffith - Avery Bacterial Transformation - process by which bacterial cells take up naked DNA molecules Why do we care about bacterial transformation? ● Genetic Research ● Antibiotic Resistance Fred Griffith ● Studied two strains of bacteria, Streptococcus pneumoniae ● Worked with two strains of bacteria: Rough Strain and Smooth Strain ● S strain causes pneumonia and the R strain does not Griffith ● S strain: ● Heat killed S strain: ● R Strain: ● Heat killed S strain + R Strain: Fred Griffith - 1928 ● Discovered that something from the heat killed wild type (smooth) bacteria was turning the mutant (rough) type bacteria into smooth. ● Called it the transforming factor ● Didn’t really know what it was Avery ● Identified the molecule that transformed the R strain of bacteria into the S strain ● Concluded that when the S cells were killed, DNA was released ● R bacteria incorporated this DNA into their cells and changed into S cells. ● Many people did not believe that it was DNA, not protein that transformed genes Objectives ● SWBAT list and identity the characteristics of viruses ● SWBAT label a diagram of the life cycle of a virus ● SWBAT explain Hershey and Chase’s experiment and it’s importance to the discovery of DNA VIRUSES! DO NOW List as many types of viruses you can think of! Viruses - Six Characteristics 1. Have their own genome (genetic make up) made of either DNA or RNA 2. Does not have enzymes, ribosomes, or ATP 3. Have external protein shells (capsids) Viruses - Six Characteristics 4. Infect only specific cells 5. 2 life cycles (lytic and lysogenic) ○ Lytic – breaks out and spreads ○ Lysogenic- hangs around 6. Smaller than bacteria When a virus attacks a cell Put the following pictures in order! Lytic vs. Lysogenic Cycles THINK - PAIR - SHARE Compare how the lytic and lysogenic cycles are different from each other and how they are similar Lytic Lysogenic Both DO NOW - What is this virus doing? Discoveries Involving DNA and Viruses Hershey & Chase Hershey & Chase ● Used radioactive labeling to trace the DNA and protein ● Concluded that the viral DNA was injected into the cell and provided the genetic information needed to produce new viruses Hershey and Chase Radioactive Labeling: ○ Used radioactive phosphorus (32P) to identify DNA in the bacteriophages ○ Used radioactive sulfur (35S) to identify proteins in the bacteriophages Hershey and Chase ● Tracking DNA ● Radioactive bacteriophages infected bacteria cells ● After review results found radioactive sulfur outside of bacteria cells and radioactive phosphorus inside bacteria cells DO NOW 1. What is a virus? 2. Why is a virus NOT considered a living thing? 3. What are the two types of life cycles of viruses? Briefly describe each. DO NOW 1. Briefly describe Griffith’s experiment 2. What did he conclude? DO NOW 1. Briefly describe hershey and chase’s experiment. 2. What did they conclude? DO NOW 1. Find the complementary sequence of DNA: ATCGGATATAGC 2. What bonds form between the sides of DNA? 3. What type of sugar is in DNA? 4. What does 3’ mean? Objectives 1. SWBAT explain what Chargaff, Franklin, and Watson/Crick discovered. 2. SWBAT create a timeline of the scientists that discovered DNA. 3. SWBAT label parts of the DNA molecule 4. SWBAT describe how a chromosome coils. THINK-PAIR-SHARE Create a timeline of all the scientists and what they discovered. Do Now - How do you think your DNA gets in every cell of your body? Explain. DNA Replication Objectives ● SWBAT explain the different forms DNA can be found in (chromatin, chromosomes, etc.) ● SWBAT define semiconservative replication, helicase, ligase, DNA polymerase, and replication. ● SWBAT explain how DNA Replicates ● SWBAT extract DNA out of a strawberry. Chromosome Structure ● DNA coils around histones (proteins) to form nucleosomes. ● This coils to form chromatin fibers. ● The chromatin fibers supercoil to form chromosomes that are visible in the metaphase stage of mitosis. This is known to be condensed Semiconservative Replication ▪ Parental strands of DNA separate ▪ Each strand serve as template ▪ DNA molecules produced have one strand of parental DNA and one daughter strand Enzymes involved in DNA Replication Steps to DNA Replication 1. Unwinding ● DNA helicase (enzyme) unwinds and unzips the DNA – breaking the hydrogen bonds between the strands ● RNA primase adds a short segment of RNA, called an RNA primer, on each DNA strand. Steps to DNA Replication 2. Base Pairing ● DNA polymerase (enzyme) adds complementary nucleotides to parent DNA strand ● Only adds to 3’ end of new DNA strand 2. Base Pairing (cont.) Two daughter strands of DNA are made differently Leading Strand- Built continuously without breaks Lagging Strand- makes several small fragments of DNA ● Built discontinuously ● Pieces are called Okazaki Fragments ● Fragments are connected by DNA Ligase Steps to DNA Replication 3. Joining ● DNA Polymerase removes RNA Primer and fills it in place with DNA nucleotides ● DNA ligase links two sections Animations of DNA Replication ● Animation 1 ● Animation 2 ● Animation 3 Do Now ● Label the DNA Replication Diagram Do Now ● What is DNA replication? ● Why is it called semiconservative? ● What is DNA helicase? Do Now Label the DNA strands. Add in: new strands Enzymes 5’/3’ ends Let’s Practice 5’ DNA Replication in Eukaryotes and Prokaryotes ● Eukaryotic DNA unwinds in multiple areas as DNA is replicated. ● In prokaryotes, the circular DNA strand is opened at one origin of replication.