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10.991 Student Seminar December 1, 2008 Signal Integration in Immune Cell Biology Kevin Fowler Thesis Advisor: Arup Chakraborty The adaptive immune response allows the body to protect itself from a diverse set of pathogens. Key orchestrators of the adaptive immune response are T cells which recognize antigen through interactions between their T cell receptor (TCR) and antigen presenting cells. The TCR intracellular signaling pathway is well understood and past members of our group have successfully developed mathematical models to study T cell activation. One potential limitation of models that only consider the TCR pathway is that T cells receive numerous signals from various sources including cytokines and costimulatory molecules. The focus of my research is to determine how T cells integrate these various signals and how that affects the nature of the immune response. To approach the problem of how T cells integrate various cytokine signals with the TCR pathway, we first needed to be able to model cytokine signaling alone. As a case study, we considered the cytokines, IL-6 and IL-10. Though these two cytokines activate primarily the same transcription factor, IL-6 is pro-inflammatory, while IL-10 is antiinflammatory. One major difference between the two is that IL-6 induces a transient signal, while IL-10 induces a sustained signal. We propose a simple transcriptional network that can be activated by a single transcription factor, but that leads to two different cellular decisions based entirely on the duration of the signal. We find that the network is not sensitive to moderate changes in the amplitude of the signal. We then consider how cytokine signals are integrated by studying the differentiation of naïve T cells into either regulatory T cells (Tregs) or into the recently discovered Th17 lineage, which induces inflammation and has been implicated in autoimmune diseases including multiple sclerosis. The exposure of naïve T cells to TGF-β leads to the Treg lineage, while exposure to TGF-β and IL-6 leads to Th17 cells. Thus, the development of these two very different lineages differs only by the addition of IL-6. Our signal duration model may provide insight into how the IL-6 and TGF-β signals are integrated and therefore our initial experiments have been geared towards quantifying both the amplitude and duration of these signals.