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Chapter 1 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Chapter 1 –DNA databases of convicted felons have solved many crimes and exonerated many innocent people. What might be the benefits and dangers of establishing databases on everyone? How should such a program be instituted? 1-2 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. • • • • • Is a life science It is the study of inherited variation and traits Genes are the units of heredity Genes are composed of Deoxyribonucleic Acid (DNA) Traits are produced by an interaction between the genes and the environment 1-3 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Contain the instructions within the cells for protein production The field of proteomics studies the production of proteins within specific cell types. Figure 1.1 1-4 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Is the complete set of genetic information for an organism It includes: All of the genes present in an organism and Other DNA sequences that do not encode genes Human genome was sequenced in 2000 1-5 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Detects health-related genetic variants May be used To prevent, delay, control, or treat symptoms Gain information on risk of genetic diseases and for pre-pregnancy testing Personalize medical treatment 1-6 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Figure 1.2 1-7 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Step 1 – Research and record family history Step 2 – Provide cell sample Step 3 – Isolate sample DNA and apply to personalized microarrays Step 4 – Calculate and communicate results 1-8 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Genetic counselor recommends tests and explains the findings from the laboratory testing Confidentiality is important Laws prevent employers and insurers from discriminating against anyone based on genetic information 1-9 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Cystic fibrosis Certain cancers Breast, Colorectal, Prostate Inherited forms of Alzheimer's Type 2 diabetes Rheumatoid Arthritis Celiac Disease Restless Legs Syndrome Macular Degeneration 1-10 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. • • • A double stranded polymer consisting of a chain of nucleotides Deoxyribonucleotide components: • Phosphate • Sugar: Deoxyribose • Base: ▪ Guanine G ▪ Adenine A ▪ Thymine T ▪ Cytosine C The sequence of the bases code for the amino acid sequence in a protein Box Figure 1.1 1-11 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Single stranded polymer of ribonucleotides Ribonucleotides components: • Phosphate • Sugar: Ribose • Base: ▪ Guanine G ▪ Adenine A ▪ Uracil U ▪ Cytosine C Several types: mRNA, tRNA, & rRNA Uses information on DNA to construct proteins 1-12 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Only 1.5% of the DNA in the human genome encodes protein Rest includes highly repeated sequences with unknown functions known as STR’s or short tandem repeats Includes about 24,000 protein encoding genes Cataloged in database Online Mendelian Inheritance in Man (OMIM) 1-13 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Alleles are variants of genes They form by mutation Mutations in sperm or egg cells are passed on to the next generation May be positive, negative, or neutral 1-14 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Polymorphisms are variations in the DNA sequence that occur in at least 1% of the population Single nucleotide polymorphisms (SNPs) are single base sites that differ among individuals and are important as markers Each SNP represents a difference in a single DNA building block, called a nucleotide. 1-15 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Composed of DNA and protein Found in the nucleus of the cell Human cells have 46 chromosomes 22 pairs of autosomes The sex chromosomes X and Y Females have two X chromosomes Males have one X and a Y 1-16 A Karyotype is a chart of the chromosomes organized by the size of the chromosome pairs. Figure 1.3 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. All cells with a nucleus in the body contain the same genetic information Differentiation causes cells to differ in appearance and function. This is controlled by variation in gene expression. Stem cells are less specialized 1-18 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. The genotype of an individual is the alleles (genes) they carry The phenotype is the visible trait: Dominant alleles are expressed if the individual carries one or two copies of the allele Recessive alleles are only expressed if the individual carries two copies of the allele 1-19 The Family •Pedigrees are diagrams that enable recessive & dominant traits to be followed through individuals across multiple generations of a family nheritance of traits can be observed in families. Figure 1.3 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. A Population • Is a group of interbreeding individuals • The gene pool is the alleles in a population • Evolution is the changing allelic frequencies in populations over time. 1-21 Figure 1.3 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. • Two random people share approximately 99.9% of their genome • Concept of “race” as defined by skin color is a social, not a biological, concept • Studies indicates humans arose in Africa and migrated across the globe with relatively little change. 1-22 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. • Mendelian traits are determined by a single gene • Most traits are multifactorial and not controlled by a single gene. They are influenced by more than one gene and the environment • Some illnesses may occur in different forms: Mendelian, multifactorial, and non-inherited 1-23 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. The modifying effect of the environment on gene action counters the idea of genetic determinism, which is that an inherited trait is inevitable. The idea that “we are our genes,” or such phrases as “its in her DNA,” dismiss environmental influences. In predictive testing for inherited disease, which detects a disease-causing genotype in a person without symptoms, results are presented as risks, rather than foregone conclusions, because the environment can modify gene expression. 1-24 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. A woman might be told “You have a 45 percent chance of developing this form of breast cancer,” not, “You will get breast cancer.” Genetic determinism may be harmful or helpful, depending upon how we apply it. As part of social policy, genetic determinism can be disastrous. An assumption that one ethnic group is genetically less intelligent than another can lead to lowered expectations and/or fewer educational opportunities for those perceived as biologically inferior. Environment, in fact, has a huge impact on intellectual development 1-25 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Absolute risk - the probability that an individual will develop a condition or trait Relative risk - the likelihood that an individual from one group will develop a condition in comparison to another group (usually the general population) Empiric risk - risk determined by observing incidence of a trait in the population Risk factor - a situation that alters incidence of a disease (or trait) 1-26 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Figure 1.7 1-27 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. • Historical • Common origins 1-28 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. • Forensics • Crime scene evidence • Victim Identification • Location of blood relatives, i.e., adoptions 1-29 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Health care: Prediction of disease Development of treatments Family planning 1-30 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Agriculture: Crop & animal breeding Genetically modified foods (GMO’s) Pest management Figure 1.12 1-31